LOCUS FGF22 6160 bp DNA linear PRI 25-SEP-2003 DEFINITION Homo sapiens FGF22: fibroblast growth factor 22 gene, partial cds; and FGF22 gene, partial sequence. ACCESSION FGF22 VERSION KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6160) AUTHORS Rieder,M.J., Livingston,R.J., Daniels,M.R., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (25-SEP-2003) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..6160 /organism="Homo sapiens" /db_xref="taxon:9606" variation 103 /frequency="0.17" /replace="T" variation 307 /frequency="0.36" /replace="T" misc_feature 312..1534 /note="Region not scanned for variation" gene 1023..4801 /gene="FGF22" mRNA join(1023..1283,4432..4535,4607..4801) /gene="FGF22" /product="FGF22" CDS join(1070..1283,4432..4535,4607..4801) /gene="FGF22" /codon_start=1 /product="FGF22: fibroblast growth factor 22" /translation="MRRRLWLGLAWLLLARAPDAAGTPSASRGPRSYPHLEGDVRWRR LFSSTHFFLRVDPGGRVQGTRWRHGQDSILEIRSVHVGVVVIKAVSSGFYVAMNRRGR LYGSRLYTVDCRFRERIEENGHNTYASQRWRRRGQPMFLALDRRGGPRPGGRTRRYHL SAHFLPVLVS" variation 1611 /gene="FGF22" /frequency="0.01" /replace="A" variation 1616 /gene="FGF22" /frequency="0.01" /replace="" variation 1669 /gene="FGF22" /frequency="0.14" /replace="C" repeat_region 1688..1796 /rpt_family="MIR" /rpt_type=dispersed variation 1742 /gene="FGF22" /frequency="0.01" /replace="T" variation 2007 /gene="FGF22" /frequency="0.39" /replace="C" variation 2022 /gene="FGF22" /frequency="0.02" /replace="A" variation 2078 /gene="FGF22" /frequency="0.01" /replace="A" variation 2079 /gene="FGF22" /frequency="0.01" /replace="C" repeat_region 2173..2255 /rpt_family="MIR" /rpt_type=dispersed repeat_region 2270..2403 /rpt_family="L2" /rpt_type=dispersed variation 2273 /gene="FGF22" /frequency="0.04" /replace="T" variation 2351 /gene="FGF22" /frequency="0.01" /replace="T" variation 2359 /gene="FGF22" /frequency="0.48" /replace="C" repeat_region 2439..2740 /rpt_family="Alu" /rpt_type=dispersed variation 2487 /gene="FGF22" /frequency="0.01" /replace="A" variation 2527 /gene="FGF22" /frequency="0.26" /replace="C" variation 2650 /gene="FGF22" /frequency="0.02" /replace="C" variation 2667 /gene="FGF22" /frequency="0.01" /replace="C" variation 2676 /gene="FGF22" /frequency="0.01" /replace="A" variation 2690 /gene="FGF22" /frequency="0.01" /replace="G" variation 2738 /gene="FGF22" /frequency="0.01" /replace="C" variation 2775 /gene="FGF22" /frequency="0.15" /replace="C" variation 2789 /gene="FGF22" /frequency="0.01" /replace="T" variation 2827 /gene="FGF22" /frequency="0.09" /replace="T" variation 2879 /gene="FGF22" /frequency="0.01" /replace="G" variation 2925 /gene="FGF22" /frequency="0.15" /replace="G" variation 2964 /gene="FGF22" /frequency="0.04" /replace="T" variation 3037 /gene="FGF22" /frequency="0.32" /replace="T" variation 3039 /gene="FGF22" /frequency="0.04" /replace="A" variation 3123 /gene="FGF22" /frequency="0.03" /replace="T" variation 3142 /gene="FGF22" /frequency="0.06" /replace="A" variation 3700 /gene="FGF22" /frequency="0.04" /replace="A" variation 3983 /gene="FGF22" /frequency="0.29" /replace="T" variation 3990 /gene="FGF22" /frequency="0.01" /replace="G" variation 3991..3992 /gene="FGF22" /frequency="0.34" /replace="" variation 3995 /gene="FGF22" /frequency="0.01" /replace="T" variation 4028 /gene="FGF22" /frequency="0.01" /replace="A" variation 4032 /gene="FGF22" /frequency="0.03" /replace="C" variation 4099 /gene="FGF22" /frequency="0.21" /replace="G" variation 4129 /gene="FGF22" /frequency="0.01" /replace="T" variation 4136 /gene="FGF22" /frequency="0.01" /replace="A" variation 4228 /gene="FGF22" /frequency="0.01" /replace="G" variation 4265..4317 /gene="FGF22" /frequency="0.11" /replace="" variation 4345 /gene="FGF22" /frequency="0.03" /replace="A" variation 4382 /gene="FGF22" /frequency="0.01" /replace="A" variation 4391 /gene="FGF22" /frequency="0.01" /replace="T" variation 4765 /gene="FGF22" /frequency="0.01" /replace="T" variation 4861 /frequency="0.01" /replace="T" variation 4862 /frequency="0.01" /replace="A" variation 4880 /frequency="0.02" /replace="A" variation 4893 /frequency="0.02" /replace="A" variation 4939 /frequency="0.44" /replace="T" variation 5046 /frequency="0.01" /replace="C" variation 5048 /frequency="0.40" /replace="T" variation 5124 /frequency="0.03" /replace="C" variation 5139 /frequency="0.01" /replace="C" variation 5325 /frequency="0.01" /replace="T" repeat_region 5329..5604 /rpt_family="MaLR" /rpt_type=dispersed variation 5341 /frequency="0.07" /replace="A" variation 5348 /frequency="0.01" /replace="A" variation 5654 /frequency="0.43" /replace="A" variation 5659 /frequency="0.09" /replace="G" variation 5676 /frequency="0.09" /replace="A" variation 5688 /frequency="0.09" /replace="T" variation 5694 /frequency="0.09" /replace="C" variation 5694 /frequency="0.13" /replace="A" variation 5712 /frequency="0.44" /replace="A" variation 5731..5773 /frequency="0.24" /replace="" variation 5866 /frequency="0.01" /replace="C" variation 5898 /frequency="0.10" /replace="T" variation 5905 /frequency="0.43" /replace="G" variation 5940 /frequency="0.11" /replace="C" variation 6046 /frequency="0.09" /replace="T" variation 6062 /frequency="0.10" /replace="T" variation 6117 /frequency="0.35" /replace="G" BASE COUNT 956 a 1920 c 2260 g 1024 t ORIGIN 1 tgtcttcagc ctggtgctat ttaaaggtgg gtgccacctg gggctgtggc cgcagggcca 61 ggactgggct gctgggagct gtgtccccac agcggaggtc gccgcccctc tcaggcctcg 121 gtttccccag ttgtcaatgc ctccacttgg ctgtgagtct gtgagggtca ctgtgctcac 181 cttttggggc ccagcgcatg gggcaggcag aggaagggtg ggggccagcc gccttgctgg 241 gtggttcccc gtggggcctg gggtatggct ctaagggagg agcaagtgtg ggtgcgaatg 301 gggccgcccc attcctgccg cctccgacgt gccccgccag ccggccaccg acaggtctac 361 gtggctatcc tccctcctgc ccacctacct gcccaaacac acgtccccag tcgtcacctg 421 cccacccacc cgcgcattcc cacacccttg tgggcctggc tttcgggaaa ctacaatttg 481 cggggagaga agtcccacga gggcatgccc cggagcctgg ctggtcccac ggctgacgca 541 cgcggcagga cctcccgtgt ccatctctgt ccccaagcat ctccgcctct gcccctctct 601 gtctctgtgt ctctctcgtc tctcccggtc atcttccttg tgtctcttga ctgccgccgt 661 ctttctgtct ctgtctccct ccgggtctct gtctccctcc aggtctctgc ggcccgcgtc 721 tcacactccc gcccccgcaa cccgaggtcc tagcccgccc ggggactcgg ctgactcacg 781 gacacgcccc gcgagacaaa caacaaacgc gcggaggccg agcgcggagt cccgcacggc 841 cgcgcccctg tgcacctggc ccccgccccc gagacgtccc attggccggc gccctagcct 901 ggtcccgccc aagtggaccc cgcccccgcc ccgaggcacc ccattggccg gcgtccccgc 961 cccagcgaac ccggccccgc ccccgaggcg ccccattggc cccgccgcgc gaaggcagag 1021 ccgcggacgc ccgggagcga cgagcgcgca gcgaaccggg tgccgggtca tgcgccgccg 1081 cctgtggctg ggcctggcct ggctgctgct ggcgcgggcg ccggacgccg cgggaacccc 1141 gagcgcgtcg cggggaccgc gcagctaccc gcacctggag ggcgacgtgc gctggcggcg 1201 cctcttctcc tccactcact tcttcctgcg cgtggatccc ggcggccgcg tgcagggcac 1261 ccgctggcgc cacggccagg acagtgagtg cggggcggcg ggggcctggg gtggggaggc 1321 ggcgggtgac ggcaacgcgg ccgccgtctt cacggtgacc tgcgcccgcg ggggagtccc 1381 ggaggctcct ctgtgcagcc tcggcctcag tttccgtggt ctgtgagatg ggtgcagcct 1441 gcctggtggg agggttgcac tgttaaagcg aaggctgcag cggcggaccc ggctcagggg 1501 cagagaagcg tccgtgtggt acaaccctgt gggtggggcc acccatctgc aggtgggaaa 1561 ctgaggctcc agaggggctg gggcaggccc agctgcatgg cggaagcggc ggggggctga 1621 cctccggact cctgacatca cagaatccag tcagggctgc ctgagtcggg gccccctctg 1681 cttcttccca gacaccccat ctggcaggtg aggacaagga ggcacacaga agggatggga 1741 cctgcccagg gtcacactga caggggtggc ggagctgggt ccccacaggg cccaggacgt 1801 cacggagcgg gcgtctctgt ccccagggtc tgccgagcac actgaggtag gccctcagtg 1861 tttgtggaat gtcaggagca agaggagagg ctgggcacag caggggatgt gggtacctgg 1921 aggccagggg agtcggtgtc cccgccgggc ggggggcact gggaaggggg cccgggcccg 1981 ctggctgccg cctgaatcac caccattagg gcaggtaatc accccctgtc cttcccaccg 2041 ctttcatctg ggcgccaagg ccctcattag gccgcacgtg acgagggcgg acaggggact 2101 ggctgggccg gtccatccat ggcgggcatg gccaggcggg gtggcctcgg gccggggcag 2161 aggcctggct ccgctgcctg acctggaaca gtctctgcct ctctccaagc ctcggtttcc 2221 ccagctggac ggtgatgggg gtgagggcta gctgagggct ctcctgccct tcgtgcattc 2281 gctggtcact aatcgggcac cttgtgggtg ctgtgctccg catgggggac ccagtggtga 2341 cagagacgcc caccctcctg gggctcccag agcagaggcg cgcagcagtt agacacgtga 2401 acaagggcgc aggtgggtgc acagaacagt gaacggttgg ccgggtgcag tggctcacgt 2461 cggtaatccc agcactttgg gaggccgagg cgggcagatc acgaggtcag gagatcgaga 2521 ccatcctggc taacacggtg aaaccccgtc tctaccaaaa atacaaaaat tagccgggtg 2581 tggtggcggg cgcctgtagt cccagctact cgggaggctg aggcaggaga atgacgtgaa 2641 gccgggaggt ggagcttgca gtgagctgag atcgcgccac tgccctccac cctgggcgac 2701 agagcgagac tccgtctcaa aaaaaaaaaa aaaaaaagaa cagtgaatga cgtgaacaag 2761 ggtgcaggtg ggtgtgcaga acagtgaacg gcggtgttgg gaggcacctt gccaggggag 2821 gggaggcgca gggcgaggaa ggggccaggg gagatcgtga cacagacgcc ccagaacaac 2881 cacctcaaag acgttcctgt gtgtcctgga aggtcgggct gggaagctgc cccgaggagc 2941 tttcactttg acagggagct ggccgggcac gcagggaact gtacacccag ctgacaaagc 3001 ggcagacacc caggccgggg tgagcgagtg tgggtgagga gtggcggctg gccccagggt 3061 ccttgctgga caagacactt cagctcaggg tggggcaggg ctcacccagg gctacccaca 3121 gacgatggcg tccaaatctg gctctgccac tcccaggcct caactggccc ctctgcaacg 3181 tgggctgctg agcgggcttg gtaggacagc tggcatacag tcggcgctca agcatgtctg 3241 tggtgtccca taaaccaccg gtgtcccact ctaggccact gccagcccgg cctccagtcc 3301 agagtcccag tccggagtcc cagtgactgt gcgtgggccg ggcagctgag ctgtgagggc 3361 cgggctgggg gctccatatg gggtggtgtg agctgtgagg gccgggctgg gggctccata 3421 tggggtggtg tgagctgtga gggctgggct gggggctcca tatggggtgg tgtgagctgt 3481 gagggccggg ctgggggctc catatggggt ggtgtgagct gtgagggccg ggctgggggg 3541 tccctggggt ggtgtgagct gtgagggccg ggctgggggg tctctggggt ggtgtgagct 3601 gtgagggccg ggctgggggc tccatatggg gtggtgtgag ctgtgagggc cgggctgggg 3661 gctccatatg gggtggtgtg agctgtgagg gccgggctgg ggggtccctg gggtggtgtg 3721 agctgtgagg gccgggctgg gggctccctg gggtggtgtg agctctgagg gccgggctgg 3781 ggggtctctg gggtggtgtg agctgtgagg gccgggctgg gggctccata tggggtggtg 3841 tgagctctga gggccgggct gggggctccc tggggtgctg ctggtcgctg gctcattgac 3901 agttatcagt ggtctgggtg ggccctgccc cttctgactc ccacatccca ggaacccttt 3961 cccaaccttc ctcgtggtgt tgctgccccc ctgacgtccg tccctctggg tgtgtgggag 4021 cccccccgcc atacacacac acagatgctg ctcttgggct gagctgcagg gacagcgctg 4081 acctggccct cccacgggct cctcatcgat ctctgcactc ccccagctcg tgggggccgt 4141 cctgcttccc gttccctctg cctgctcctt gctcctccct cacatgctgg ggggggctcc 4201 tggtgtcagt cacggctctg ggggatcctg agtgtccgtc gtggtcggga ggggactcgt 4261 ggtctggggc agggggggct cctcgtgtct gtcgtggtca tgaggggact cgtggtcccg 4321 ggggtctcct ggtatctgtc gtggtcctga gggccctgca cgaagcacag cggacagcag 4381 cggtgctggg ggtgagccag caaggccctc cccgaccccc gcctccccca ggcatcctgg 4441 agatccgctc tgtacacgtg ggcgtcgtgg tcatcaaagc agtgtcctca ggcttctacg 4501 tggccatgaa ccgccggggc cgcctctacg ggtcggtgag tgccgggcag ggctgggcgg 4561 cgcgggcagg gtggggaggg tgggccggcc tcacccccgc ccgcagcgac tctacaccgt 4621 ggactgcagg ttccgggagc gcatcgaaga gaacggccac aacacctacg cctcacagcg 4681 ctggcgccgc cgcggccagc ccatgttcct ggcgctggac aggagggggg ggccccggcc 4741 aggcggccgg acgcggcggt accacctgtc cgcccacttc ctgcccgtcc tggtctcctg 4801 aggccctgag aggccggcgg ctccccaagg tgcctgggct ggtggcgagg ggcccggcca 4861 cgcttgttct tccccctgcg ggctctgtaa gcgctgagtg cccaccgtgt gcgggcgctg 4921 tggacacagc ccaggagccc tccagggggg tcccagcctg agggggtggt ggccaccaag 4981 caggttcaat cctgagttgg ggacctcgag gacccaacag ggcgcctctc gggctgaagg 5041 acgcagacgt cgaaaggtcg agggggacgt cccaggcagg gcccggcaga ggcaggggct 5101 cggggtgggg agcacgttgg gagtgggggc aggagcggag gggaggggag ggggccgggg 5161 agacggtgac agacgccgca gaacaccagc ctcgaagccg gtcccgtccc gggaatctgc 5221 aaatacaacg ccttgcgagg acaaaggcac ctgcaggtgg gacggagatg gaggagcatc 5281 cagggtgggg ggtccagggc cccagtgtcc tcacagggtc ctcacgacag gaggcgggac 5341 ggtgagagcc agagagagat ggggatgggc cgcgctgtgg ccgtgaaggg gaggaagggc 5401 cctaagctga gggacgtggg tgcctccaga tgctggggaa ggcgggaacg gttccgcact 5461 ggagcccccg ggagggaccg gcctgctcct gccttgatat gagcccagtg ggacccagtt 5521 tggactctgg cctccagaac cgccagaaaa taaacgtagt aagccatcaa ctttgtggtc 5581 ttttgttaca gcagacgtcg gaaatatgca cacggtgtct gaaactgttc tcatgacaaa 5641 ataagcctca gatccccccg ggaagggcgg aggccgacgc ctcggtgctc ctcggatccc 5701 ccgggaaggg cggaggccga cgcctcggtg ttcctcggat cccccgggaa gggcagaggc 5761 cgacgcctcg gtgctcctca gatcccccgg gaagggcaga ggctgagggc aggagccgtg 5821 ctgggtgcag ggcaggcctg ggggcttcat gccgctgtcc tgcgggacgc agagagggct 5881 ggccgtcggt gtgggggcgc ccccacctgt gcccagcgcc ctcctgacat cctgactccg 5941 ctgggacttc tgcctacagc cctgggagtc aaactccagc ctctcagaga aaaggtcaga 6001 gccaagagcc ccacagcctg gagccaggca gtgacaccct gggcccgtct ccccttctgt 6061 gcgtggggcg acagcagcat cgccctggtg aagtccccgg ggacggccag ggctccatcc 6121 ccagccgccg ccttccacat aaatacagga agactgggcc //