LOCUS FGF17 7306 bp DNA PRI 28-MAR-2002 DEFINITION Homo sapiens fibroblast growth factor 17 (FGF17) gene, complete cds. ACCESSION FGF17 VERSION KEYWORDS . SOURCE Homo sapiens. ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7306) AUTHORS Rieder,M.J., Braun,A.C., Montoya,M.A., Chung,M.-W., Nguyen,C.P., Nguyen,D.A., Livingston,R.J., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (28-MAR-2002) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..7306 /organism="Homo sapiens" /db_xref="taxon:9606" repeat_region 1..117 /rpt_family="MIR" /rpt_type=dispersed variation 85 /replace="T" /frequency="0.37" variation 184 /replace="G" /frequency="0.04" variation 209..212 /replace="-" /frequency="0.99" variation 239 /replace="A" /frequency="0.38" variation 273 /replace="A" /frequency="0.08" variation 410 /replace="T" /frequency="0.01" variation 536 /replace="-" /frequency="0.01" repeat_region 720..803 /rpt_family="MIR" /rpt_type=dispersed variation 835 /replace="T" /frequency="0.01" variation 916 /replace="T" /frequency="0.01" variation 942 /replace="G" /frequency="0.01" repeat_region 1024..1135 /rpt_family="MIR" /rpt_type=dispersed variation 1183 /replace="T" /frequency="0.06" variation 1234 /replace="T" /frequency="0.01" variation 1288 /replace="A" /frequency="0.04" variation 1627 /replace="A" /frequency="0.08" variation 1637 /replace="A" /frequency="0.01" variation 1742 /replace="A" /frequency="0.01" mRNA join(1904..1950,2132..2168,5101..5278,5514..5620, 6943..7236) /gene="FGF17" /product="FGF17" gene 1904..7236 /gene="FGF17" CDS join(1916..1950,2132..2168,5101..5278,5514..5620, 6943..7236) /gene="FGF17" /codon_start=1 /product="fibroblast growth factor 17" /translation="MGAARLLPNLTLCLQLLILCCQTQGENHPSPNFNQYVRDQGAMT DQLSRRQIREYQLYSRTSGKHVQVTGRRISATAEDGNKFAKLIVETDTFGSRVRIKGA ESEKYICMNKRGKLIGKPSGKSKDCVFTEIVLENNYTAFQNARHEGWFMAFTRQGRPR QASRSRQNQREAHFIKRLYQGQLPFPNHAEKQKQFEFVGSAPTRRTKRTRRPQPLT" variation 1981 /gene="FGF17" /replace="G" /frequency="0.05" variation 1982 /gene="FGF17" /replace="A" /frequency="0.01" variation 2012 /gene="FGF17" /replace="G" /frequency="0.01" variation 2020 /gene="FGF17" /replace="A" /frequency="0.01" variation 2056 /gene="FGF17" /replace="T" /frequency="0.01" variation 2225 /gene="FGF17" /replace="T" /frequency="0.01" variation 2233 /gene="FGF17" /replace="G" /frequency="0.49" variation 2403 /gene="FGF17" /replace="T" /frequency="0.01" variation 2559 /gene="FGF17" /replace="C" /frequency="0.29" variation 2560 /gene="FGF17" /replace="T" /frequency="0.08" variation 2694 /gene="FGF17" /replace="T" /frequency="0.09" variation 2695 /gene="FGF17" /replace="A" /frequency="0.01" variation 2708 /gene="FGF17" /replace="T" /frequency="0.01" variation 2726 /gene="FGF17" /replace="T" /frequency="0.01" variation 3119 /gene="FGF17" /replace="G" /frequency="0.01" variation 3428 /gene="FGF17" /replace="C" /frequency="0.01" variation 3580 /gene="FGF17" /replace="T" /frequency="0.01" variation 3635 /gene="FGF17" /replace="C" /frequency="0.01" variation 3718 /gene="FGF17" /replace="G" /frequency="0.17" variation 4041 /gene="FGF17" /replace="G" /frequency="0.01" variation 4183 /gene="FGF17" /replace="T" /frequency="0.01" variation 4305 /gene="FGF17" /replace="T" /frequency="0.02" variation 4431 /gene="FGF17" /replace="A" /frequency="0.02" variation 4547 /gene="FGF17" /replace="A" /frequency="0.01" variation 4610 /gene="FGF17" /replace="A" /frequency="0.37" variation 4770 /gene="FGF17" /replace="A" /frequency="0.04" repeat_region 4777..4845 /rpt_family="CR1" /rpt_type=dispersed variation 4792 /gene="FGF17" /replace="A" /frequency="0.21" variation 4911 /gene="FGF17" /replace="T" /frequency="0.01" variation 4981 /gene="FGF17" /replace="G" /frequency="0.01" variation 5602 /gene="FGF17" /replace="A" /frequency="0.01" variation 5688 /gene="FGF17" /replace="T" /frequency="0.23" repeat_region 5775..6073 /rpt_family="Alu" /rpt_type=dispersed variation 6062 /gene="FGF17" /replace="T" /frequency="0.11" variation 6221 /gene="FGF17" /replace="A" /frequency="0.01" variation 6248 /gene="FGF17" /replace="C" /frequency="0.01" variation 6367 /gene="FGF17" /replace="A" /frequency="0.19" repeat_region 6398..6506 /rpt_family="MIR" /rpt_type=dispersed variation 6461 /gene="FGF17" /replace="C" /frequency="0.04" variation 6463 /gene="FGF17" /replace="G" /frequency="0.04" variation 6711 /gene="FGF17" /replace="T" /frequency="0.01" variation 7248 /replace="C" /frequency="0.23" BASE COUNT 1461 a 2239 c 2101 g 1505 t ORIGIN 1 agctagctgt gaggctttgg gcgagtccct tgccctctct ggctctcatc caaggaatga 61 ggaagttgga acaaatgatg aatccctaag accccttcta ggtttgacat tctttgagtt 121 gcattccaaa accctggact cccccaggta agcaaggcca gggcttgccc catcctcccc 181 acacaagctc aggcagcacc cactcctgag tgggctgggt tcccgaggaa gagcctgcgg 241 agaggagacc ccggagctgc ctgcactggt cagtgcatgg gggcaggggt ggcagaccac 301 tttgtggatt gatggagctc aggaaggtga gaagggaccc acaggtgaga gtttcgctcc 361 cctggtcatc tctttaggta aataaatcca catccgccac ttccccttcc cttcccaccc 421 tgggggcgct gagaactcca gggagcccag agctgaggcc tgagctctgc ttgctcacac 481 tgggtcttcc ctcagagacc cccaagccct cctatcttct gcagtcaccg tcatccactt 541 ttctgtaggg agggaacagc atggagctct ctgttcaccg gtctccagga cctcggattc 601 cacctttaat cctgaaaacc caggaaggct tctgtatccc tacaatgaag caggtttggg 661 gctggatctg cagggtggca actcaatcca tgcagaacag aagaagcatg gacttttcca 721 ttctggctat tccattcact agctgggcca ttctgagcaa actacctccc aatgtgcctc 781 agtttcctca tctgcaaaat gggctagtcg ctggcattgt accgagcagt atgagaccgg 841 aggtcatggg aagaggctgg taggcacttc atcccaggca gctgctcagg gacatgggac 901 acagggaggg gactccgagc tgctcctagc tcagagaggc tctagggaca ggcactggaa 961 ggaaggggat gcagaatggt gagtggagct gggtctcaga acacagacat cttgaagtct 1021 gctatgtgct gatttcacac ttgacccccc aacaccctga ggcattactg tcctcatttc 1081 tcagatggaa ctacagaggc ccaaggaaaa ggggcttagg ccaggacacc cagctcttct 1141 ccaagtgtct gtctcaggct agcttttgca actctccatt gggattcttc ctagatctcc 1201 atctgtacct gccaacccac ctctgacccc caacctgttg cgcccagtat ttgctgccga 1261 tcaggacagc cttaacccct ccttcccggg caatcagctg ctccaagcca agcccacccc 1321 tgccccctgg agggaggcgg ctccttttaa ggctgcttct gggaatttcc actccagagc 1381 cagaaccaga gaccccagcc ccacttgaca cctgcggctc acccttgggg aggtggggcg 1441 ccagacctga gtgcaggaga cgcagacctg gaagggctcc ccctccctga cctgccacac 1501 atcgagtttg tctgcgtcga gtttggccag tctgtgaggg tcaggaatag agcaggagac 1561 agcagggcca cctccttcag aaggccccca ccgctccatc cctgcactgg gtggcccagg 1621 agagactggc agcccagagg gcacagcgcg cacgccccca cccgcatctg ctttgcagcc 1681 tcactggcca ggaaggtgga cacctcatac ctcagtctcc caattacgcc ctcctcctcc 1741 ccctcctcct ccctcttttc tctcctcctc ctcccctttc tctcctcctc gcccccctga 1801 aaacctgtgg ctcggagaga ccttggcttc tctgggactc tacccctggg gacttcccac 1861 atctgctcct gagcttgggg gcaggggggc aaccgcctga ggaacctctc cagcgatggg 1921 agccgcccgc ctgctgccca acctcactct gtaagtgtgc tacctctccc actggagttt 1981 cgttgccatt tccagcctca gggcagccct cctcttcccg ggactcccac gcgtgcgtgc 2041 acggggctgg cagggcgggg gcgggggcct gggtgcaccc taggcttgca gctggcaccc 2101 acacctgggc ttacctcctc tccccacaca ggtgcttaca gctgctgatt ctctgctgtc 2161 aaactcaggt aggcgggcat tcccaccggc tttcccccaa tttttccacc ctacctgacc 2221 agggcgggtg caagggaccg gctcctttca ggtggacaga ggcagagtct ggcctctccc 2281 tgggtccagg aggcactgag gtttggaggg gagtgagcct ttgaccgggt gggcagggaa 2341 gggggctgac tgaggttttg tctctgtcct ccctctgagg accctcccca cttcccctgg 2401 gtctctgctc ctcttcctcc ctctccatcg ggttccccca gacttgaggg atggagcctg 2461 gagcggttgg aagcaggtgg aggtgatggc tcaggtgagg cttgggtttg ccagtacctg 2521 aaaggacagg ttttgatgca agaccacttg tatgtccttc tcgccacccc actcccatca 2581 atatggatgc ctggggtggg ggtctcgtga gcatgtccag aatgcctggc cagggtgagg 2641 tgactcctca cctagagggc acagaggtca agcccaaaga ggtttgtttg ggacgggatg 2701 cagggttcgc ttctccacac tccccccacc ccaagtcggc cccccacctc cctccatgca 2761 cacctcccac ccccaagtct cagcccccag tgcgaggctt gctccctttt ttgtgatcct 2821 ccataaaagt gcagctatta aaatgcactg gtccagaacc gctctgggga gagatcgctt 2881 ggctttccca ggccagaggc ccgcttctct tcatatccag tggggacttt ttttgaaggt 2941 aaatgccttt tctctgggag agggaaaggg gcagcctttg aagcagtggg ggggtgggag 3001 agggagagac aattcccccc cccttccttc ccccttttgc tccagccccg ttccaggcct 3061 tttgcttcac acatccaggg ggagccagaa gaaagccccc agcctggctg ggagggggct 3121 gggggtgggc ccaacctgtt ctggagggga actagcacaa tggtgcggct ggccgggcgt 3181 ttatggcctg gctgaggccc cattcaggac tcagggaagg tggcaaagcg gtcctttccc 3241 ccttgaagtg ccccctcacc cccctgggag ggggggccag caggccggac cacagccatg 3301 cttgaggggc tgtctgacaa gcagctgtct gcagtggtgg aaggggaggt cctcccgcag 3361 cgggaacatg aaagggacag gctaggtccc gcggggagag ggacttgtgg gttgtgggct 3421 gtgggggggc gtggggctgc ttttgtgaaa agcttgaagg gggacgagga aaggaggggg 3481 cttcgggggg gcgctttctg ctcctgacct ggaacagact gccagaggag gccgtcggcc 3541 aagaggggcg gagggcctga acctgggcca ggaggcgggg ctgggatagg caggacccca 3601 ccccctggaa gggaggccag cgtggggcag gctgggcagg tcccccaccc caaatgctcc 3661 agggtggggc gaggggcagg tcttgcagag gctaggcaga ggctgctcta tggggagctg 3721 caattggaaa tgagcaacgg tgcacagtaa gtgttaaccc cgcgcaggtt aaatgtccag 3781 ctctgagagc tgctccctca ctccccctgc ctcaaaggtg atatttccca ccccctccct 3841 aggagagagt agcccctaac agatgctaat ctgggtctag ctctgtccag atggctgagg 3901 ttgggcctgg gataaaggtg gaattaggga tttggggcag gggctgagaa aagctgtccc 3961 agcacaggca gcggcatcca ggtggagaca aaaccagcaa aaaaggtaca ttctcatgct 4021 agagctgagg ctgttgccag cagccaggaa acctagcccg ggtcgcacct tgcaggatgg 4081 aggggaagaa gtactcagtc tctcccactc agccttacag atgggtaacg agagacctag 4141 ctgggaggcg gtactcctcc tggctttgca cagtgcgtgg ggggaaatgg ttcctctccc 4201 ccaacccaaa ggggaagcag gtgggcgggc gcatcccacc aactggccag gagcctctgt 4261 tacattgtgg ctaaggagct gcctgccagg ggcagccatt gggccaccgc tgatagtgcc 4321 tgtcctcttg gtactgcctc tgcctccctc cgctaaggag gcaccttgcc tgcctgctgt 4381 cccatagtgc ccagccccag ccccagcccc agctccagcc catagaggag ggaggaacac 4441 tggaagggcc ctgagcacca gggggcaagg ccgggaagaa gatgggtatg agctcaggat 4501 tccacagtta gtgcttcaaa gaaatgctca tgggaccctg caggagcttt cagagtcccc 4561 cacatgctct ctggtgaccc taactcgcag caccatctgc tctgtgcccg tgtgctgggc 4621 aaggggtctt tcaaggccag tggggaggat gaggaaggaa tctggttgtc ctggctaatg 4681 gagcatgtcc ttggagttct gggggagatg acaggctctg gtctaagagg tagggacagg 4741 ggttctgtcc ctaatgagct gtgtgccccg tgcacctcct tcatagaata cgaggacggg 4801 atagaaccct gagggctcct tccagctccc agagtcctga ttccagggct gtgctctgtc 4861 aataagtgtc ccccagcctg ggcagacccc agtcccttct gtaaggtaga cgcaaagcaa 4921 agaggttatg accggctcac ccaggggcct gggaaggcta tggccatatg cccacttcac 4981 tctgcaggac aagtggcctg tccccactat attcacctcc tcacccctct cccttggatg 5041 gaccagtggt ggtgtcaccc aaagcaaatt gacactattt ttcccttggt aaccgcaaag 5101 ggggagaatc acccgtctcc taattttaac cagtacgtga gggaccaggg cgccatgacc 5161 gaccagctga gcaggcggca gatccgcgag taccaactct acagcaggac cagtggcaag 5221 cacgtgcagg tcaccgggcg tcgcatctcc gccaccgccg aggacggcaa caagtttggt 5281 gagagttggc cctcccccca gggcacccac acctccactc tgcctcactt ccaccctgcc 5341 tcacctcctg gtccatcccc agatcctgtg tcagggctga gggccccaag ggcctgagtg 5401 tccccaaccc cttcgcctga gtctggaggt cagtgtggct gggtggtccc ctgctgtagc 5461 cataggccgg cagccccgat ggacggaggt ctttctcccc tcccccacca cagccaagct 5521 catagtggag acggacacgt ttggcagccg ggttcgcatc aaaggggctg agagtgagaa 5581 gtacatctgt atgaacaaga ggggcaagct catcgggaag gtgaggctgg gagactggga 5641 agtaacagag aatcagccct actggggtgg ggacatatag ggcatcacgc tcccctctct 5701 cctctgagcc acacaccctc ctgtgtaaag acttcccatc ctactctcag cccacccact 5761 gggccactct ctggttttta ttttagagtc cgggtcttgc tctgctacct aggctggagt 5821 gcagtggcac aatcatagcc cactgcagct ttgtactcct gggctcaagc aatcctctcg 5881 cctcagcctc tgaagtagta gctggcacta taggtgcatg ccaccatgcc cagctaattt 5941 tttttttttt ttttgtagag atagggcctc actatgttgc cctggctggt ctcaaactca 6001 cgggctaaag cgatcctccc acctcagcct cccaaagtgc tgggattaca ggcgtgagcc 6061 acggagcccg gcctggtttc tctatttaaa tgagtccccg ggactctatt agccctctga 6121 ggggactggc aagccactgg gatctgtggg gctgatgtca ggagtatttc tccagcaggc 6181 atcagtaaga gcttagcatc tacctgacac tgcagcctct gggtggagga ctaagagctg 6241 ttgagggtgg aaagtggggc acagatgtaa gacaggaact cccccaagtt cagtggggcc 6301 agtgggctcc agctagcaag atagacacta agcagctgcc cctgtgacca aagcacacgg 6361 taggccgggc cctgctgggt gggagaattc cacttcgttt gaaaccaggc aatcccagct 6421 tcccattcgg ctgtcgctga ccaaataacc tttggtttgc ttatctttgt caagcctcag 6481 gcttcttgtc tgtagaaatg ggcacagacc cctgattgca gacagagtgg gatgggtggc 6541 tgcactggca cccttctttc ttctcattgg aggctgctgc ctcctctccc atgcccagca 6601 gcacccctca cctaggctgc atgagcattt cagtgctaag ggcccgtgca tgctgggaaa 6661 tgccgcaggt ccttgatctt cacctacatc tcaggaagct gaggcccagc ctggttcagg 6721 accgctaaac gacaagcctg caactcagat ccacaaagcg tgttcttgtt ggccactgtt 6781 gcctctctaa ataggatgcc atctcaccag gcagagttcc ctgggctcac ggccccgttg 6841 ttcccgttgt ccctcctcag tcgtccaaaa taggccgtaa gggcgacacc ccagaccagg 6901 gtaggtggac aaatgccctt cctgtccttg cttctcccgc agcccagcgg gaagagcaaa 6961 gactgcgtgt tcacggagat cgtgctggag aacaactata cggccttcca gaacgcccgg 7021 cacgagggct ggttcatggc cttcacgcgg caggggcggc cccgccaggc ttcccgcagc 7081 cgccagaacc agcgcgaggc ccacttcatc aagcgcctct accaaggcca gctgcccttc 7141 cccaaccacg ccgagaagca gaagcagttc gagtttgtgg gctccgcccc cacccgccgg 7201 accaagcgca cacggcggcc ccagcccctc acgtagtctg ggaggcaggg ggcagcagcc 7261 cctgggccgc ctccccaccc ctttcccttc ttaatccaag gactgg //