Site      Allele1   Total-pop Allele2   Total-pop Total-hz  
001115    G         0.01      C         0.99      0.02      
001584    G         0.01      C         0.99      0.03      
001624    A         0.02      C         0.98      0.05      
001734    T         0.02      C         0.98      0.05      
001936    G         0.49      C         0.51      0.50      
002318    T         0.01      C         0.99      0.01      
002397    C         0.02      T         0.98      0.04      
002896    C         0.01      T         0.99      0.01      
003074    A         0.01      G         0.99      0.01      
003242    T         0.01      G         0.99      0.01      
003419    T         0.01      C         0.99      0.02      
003736    A         0.01      G         0.99      0.01      
003792    C         0.49      A         0.51      0.50      
003799    C         0.01      G         0.99      0.02      
003800    T         0.01      G         0.99      0.01      
003862    -         0.01      +         0.99      0.01      

Note:

Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

003862: C