Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000067 GG 6 7 6 9 28 GT 14 8 8 10 40 TT 6 6 6 4 22 0.154 1.173 0.800 0.175 1.033 000081 AA 0 0 0 0 0 AG 0 2 0 1 3 GG 26 19 20 22 87 0.000 0.053 0.000 0.011 0.026 000183 GG 0 0 0 0 0 GT 0 0 2 0 2 TT 26 21 18 23 88 0.000 0.000 0.055 0.000 0.011 000197 CC 25 21 20 23 89 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 000350 AA 3 5 6 4 18 AG 10 8 7 10 35 GG 13 8 7 9 37 0.246 1.037 1.779 0.175 3.112 000744 CC 0 3 3 5 11 CT 5 10 10 10 35 TT 20 9 8 8 45 0.309 0.007 0.002 0.306 1.022 000939 AA 23 19 20 21 83 AG 2 0 1 2 5 GG 0 0 0 0 0 0.043 0.000 0.012 0.048 0.075 001093 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 21 16 20 23 80 0.048 0.000 0.000 0.000 0.012 001287 CC 23 21 20 23 87 CT 0 0 0 0 0 TT 1 0 0 0 1 24.000 0.000 0.000 0.000 88.000 001302 AA 0 0 0 0 0 AG 6 2 1 0 9 GG 16 19 19 23 77 0.548 0.053 0.013 0.000 0.262 001413 GG 1 0 0 0 1 GT 1 0 1 0 2 TT 20 21 19 22 82 9.075 0.000 0.013 0.000 20.238 001644 CC 3 0 0 0 3 CT 6 0 1 0 7 TT 18 22 19 22 81 3.444 0.000 0.013 0.000 16.061 001985 CC 0 2 3 5 10 CT 3 10 10 9 32 TT 23 8 8 8 47 0.097 0.196 0.002 0.609 1.519 002028 AA 0 0 0 0 0 AG 3 0 0 0 3 GG 23 20 21 22 86 0.097 0.000 0.000 0.000 0.026 002058 AA 1 0 1 0 2 AG 0 0 4 0 4 GG 25 20 16 22 83 26.000 0.000 1.037 0.000 20.205 002183 GG 27 22 21 24 94 GT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 002255 AA 7 6 7 5 25 AG 13 9 9 10 41 GG 7 7 6 9 29 0.037 0.714 0.714 0.490 1.739 002264 CC 26 22 22 24 94 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 002390 GG 26 22 21 24 93 GT 0 0 1 0 1 TT 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 002653 CC 0 0 0 0 0 CG 1 0 0 0 1 GG 22 22 22 24 90 0.011 0.000 0.000 0.000 0.003 002938 GG 26 20 20 22 88 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 003179 AA 0 0 0 0 0 AG 2 0 0 0 2 GG 22 21 21 24 88 0.045 0.000 0.000 0.000 0.011 003268 -- 0 0 0 0 0 +- 2 0 0 0 2 ++ 22 22 21 22 87 0.045 0.000 0.000 0.000 0.011 003777 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 21 20 20 87 0.010 0.000 0.000 0.000 0.003 003785 -- 0 0 0 0 0 +- 1 0 1 0 2 ++ 26 21 19 20 86 0.010 0.000 0.013 0.000 0.012 004334 CC 27 21 21 24 93 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 004361 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 27 22 21 23 93 0.000 0.000 0.000 0.011 0.003 004392 AA 25 22 20 24 91 AG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 004429 CC 22 22 21 24 89 CT 3 0 0 0 3 TT 0 0 0 0 0 0.102 0.000 0.000 0.000 0.025 004498 -- 0 0 0 0 0 +- 0 0 0 1 1 ++ 24 21 19 20 84 0.000 0.000 0.000 0.012 0.003 004681 CC 2 6 5 10 23 CT 7 9 7 8 31 TT 14 6 7 4 31 0.616 0.429 1.235 1.010 5.927 004694 CC 23 19 19 21 82 CT 0 2 0 1 3 TT 0 0 0 0 0 0.000 0.053 0.000 0.012 0.027 004698 AA 14 7 7 4 32 AG 7 9 7 9 32 GG 2 5 5 9 21 0.616 0.383 1.235 0.414 4.664 004810 -- 3 2 0 0 5 +- 11 7 5 4 27 ++ 11 12 15 18 56 0.010 0.399 0.408 0.220 0.509 004846 AA 25 21 20 21 87 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 004923 CC 4 0 0 0 4 CT 6 0 1 0 7 TT 17 22 21 23 83 4.795 0.000 0.012 0.000 22.835 005009 AA 0 0 0 0 0 AG 0 0 1 0 1 GG 27 22 21 23 93 0.000 0.000 0.012 0.000 0.003 005833 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 22 17 15 18 72 0.000 0.000 0.000 0.014 0.003 005850 CC 1 0 0 0 1 CG 1 0 0 2 3 GG 20 18 15 17 70 9.075 0.000 0.000 0.059 10.631 005860 -- 14 5 5 3 27 +- 6 8 6 8 28 ++ 3 5 4 9 21 2.407 0.222 0.579 0.292 5.080 006223 CC 6 7 7 4 24 CT 13 9 7 7 36 TT 8 6 6 12 32 0.027 0.714 1.779 2.175 4.113 006259 -- 0 0 0 0 0 +- 0 0 0 1 1 ++ 27 22 20 22 91 0.000 0.000 0.000 0.011 0.003 006283 CC 23 10 8 5 46 CT 4 10 9 12 35 TT 0 2 3 6 11 0.173 0.050 0.032 0.048 1.121 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 003268: cgcctgtggat 003785: ct 004498: ctc 004810: A 005860: TGT 006259: CATTT