FADD Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

CCATCCTCCG ATGAATGGAT AGACACACTG TGGCACCCAA ACACCCAGAC 50 | REPEAT AGTGGAATAG TATGCAGCCA TAAAAAGGAA GGAGGCTGGG CACAGTGGCT 100 | var(67):[T:0.47] | var(81):[A:0.02] | REPEAT CACGCCTGTA ATCCCAACAC TTTGGGAGGG TGAGGCAAGA GGATCACTTG 150 AGGCCAGGAG TTTGAGACCA GGCTGGCCAA CATGGCAAAG CCCTGTCTCT 200 | var(183):[G:0.01] | var(197):[G:0.01] ACTAAAAATA CAAAAATTAG CCTGGCATAG TGGCACACAC CTACAATCCC 250 AGCTAGTCAG GAGGCTAAGG CACAAGAAAC GAGAGTCGCT TGAGCCCGGG 300 AGGCAGAGGC TGCAATGAGC CGAGATTGTG CCACTGCACT CCAGCCTGGG 350 | var(350):[A:0.39] CAAAAGAGTG ACACTCTGTC TCAAAGAAAA AAAAGGAATG AAGTACTCAT 400 | REPEAT ATGTTCTACA TCATGGATGA ACCTTGAAAA TGATGCTGAA AACAGCCAGA 450 CACAAAATGC CACATACTGT ATGGTTCTGT ACACATGGAA TGTCCAGAAT 500 TGGCAAATCC ATAGATTTTA AAAAGTAGAT TCGGCAGGGC ACAGTGGCTC 550 | REPEAT ACGCCTGTAA TCCCAGCACT TTGGGAGGCT GAGGCTCACT TGAGGTCAGG 600 AGTTCAAGAC CAGCCTGGCC AACATGGTGA AACCCTGTCT CTACTAAAAT 650 ACAAAAATTA GCTAGGCATG GTGGCAGGCA CCTGTAATCC CAGCTACTCA 700 GGAGACTGAA GCAGGAGAAT TGTTTGAACC CGGGAGGTAA AGGTTGCAGT 750 | var(744):[C:0.31] GAGCCCAGAT CGCACCACTG CACTCCAGCC TGGCCATAGA GCGAGACTCT 800 GTCTCAAAAC AGCAAAAAAA AAAAAAAAAA GAAAGAAAGA AAAAAAAAGT 850 | REPEAT AGATTCGTGG TTGGTGGGGG AGGGGAGGAG TACATGCTAA TGGGTTTCTT 900 CTTGGGGTGA TGAAAATGTC CTAAAGTTAG ACAGCAGTAA GGGTTGCACA 950 | var(939):[G:0.03] ACCTTGTGAC TACACTAAAA ACCACTGAAG TATAACTTTA AAAGGGTGAA 1000 TTGAATGGTA TGTGAATTAT ATCTCAAGAA AACAAACTCA GCTGGCATCA 1050 GCCCCTGCCC CACCCTGTGG TAAAGCTGGG TCCTTGTTGG CTGGTGAGGG 1100 | var(1093):[A:0.01] CTCTCCTAAT CTGCACCCCC TCCTCACCTC CAGACCCACG GCATTGCTGC 1150 TCCTGGAACC CCAGCCGTCC CCTGTGCTCT GCTCTTCTGT TCTCCGTGTG 1200 CCCAGCTCTT CCCCCCACAC CTAGGTACCC GGCCCCTCCC AGCCTTCACC 1250 TGCGCCTTTA CAGAGGCCCC ATCAGACCAC CGGGCCCCCC ACCCTCCACA 1300 | var(1287):[T:0.01] CGCCCACCCC GTGAAGAGAC TCCCTTTCCC CTGGCTCTTC TGAATTTCTG 1350 | var(1302):[A:0.05] GCATACTATA CGATTTCCTT ATTTTTCCTT ATTTTTATTT TTTAATAGAG 1400 | REPEAT ACGGGGTCTC ACTATGTTAC CCAGGCTGGT CTCGAACCCC TTGTCTCAAT 1450 | var(1413):[G:0.02] CAATCCTGCC TCAGCCTCCC AAAGTGCGGG CATTGCAGGC TGAGCCACCA 1500 CGGCCGCCAC GACCTTCTCT TCTGGAGCGT GTCGCTTTTG TAATTATGAT 1550 | REPEAT GTAAACTCCG GGCACGCGGG GACCCTCGCG CTTCGCTCAC TAATTTGTCC 1600 CCAGACCCTA CTACCTGGCA CAGTAGGCGC TCAATACTGT TGATTGAATA 1650 | var(1644):[C:0.07] AACGACTGCT ACTTTGGAAA TCATGTATTA TTTAAATCAC ATGTTTAAAC 1700 GCACATAAAC TTCTGAGTAG TGTTTTCTGC ACACACAAGA TGTCTCCAGG 1750 GGCACCAAAG AATGCATTTT CCACGTTTGT CCCTAAACGT TAATGCATAA 1800 GTAACCTTGG TCACCAACAG ATGTGAGGGC ACGTGACGTT CGGGCTGCGC 1850 CCTCCCCGCC CCGGCCCTGC ACACAGTAGG GCCGCACCGC GCTTTGCAAA 1900 CAGGTGGACT CGGCAGAGGC GCGACCGCCC TCACCGCAGA GAGCTGGGCC 1950 ACCTGCAGGC TCTCAGGACA CCCAAGGCCC CACCTCCCAC CCGGAAAAGA 2000 | var(1985):[C:0.29] GACGATACGC CGGGCGCAGG CGCAGAAGCC GCGCCCGTCC GCGGCGCCGC 2050 | Exon 1 | UTR | var(2028):[A:0.02] CAGCCAGGGC GGAAACGGCT GCGGCTTCGC TAGGGACGCA TGCGCGGGTC 2100 | var(2058):[A:0.04] CCTTAGTTTT CGCGAGATAA CGGTCGAAAA CGCGCTCTTG TCGATTTCCT 2150 GTAGTGAATC AGGCACCGGA GTGCAGGTTC GGGGGTGGAA TCCTTGGGCC 2200 | var(2183):[T:0.01] GCTGGGCAAG CGGCGAGACC TGGCCAGGGC CAGCGAGCCG AGGACAGAGG 2250 GCGCGCGGAG GGCCGGGCCG CAGCCCCGGC CGCTTGCAGA CCCCGCCATG 2300 | var(2255):[A:0.48] | var(2264):[T:0.01] M 1 GACCCGTTCC TGGTGCTGCT GCACTCGGTG TCGTCCAGCC TGTCGAGCAG 2350 D P F L V L L H S V S S S L S S S 18 CGAGCTGACC GAGCTCAAGT TCCTATGCCT CGGGCGCGTG GGCAAGCGCA 2400 | var(2390):[T:0.01] E L T E L K F L C L G R V G K R 34 AGCTGGAGCG CGTGCAGAGC GGCCTAGACC TCTTCTCCAT GCTGCTGGAG 2450 K L E R V Q S G L D L F S M L L E 51 CAGAACGACC TGGAGCCCGG GCACACCGAG CTCCTGCGCG AGCTGCTCGC 2500 Q N D L E P G H T E L L R E L L A 68 CTCCCTGCGG CGCCACGACC TGCTGCGGCG CGTCGACGAC TTCGAGGCGG 2550 S L R R H D L L R R V D D F E A 84 GGGCGGCGGC CGGGGCCGCG CCTGGGGAAG AAGGTGGGCG CGGGGCCGGG 2600 G A A A G A A P G E E 95 CCGGGGGAGC CAGGGCCTGG TCGCCCGGCT GTAGGTGCTG CGAGGCTCCT 2650 CCGGTTGGCC TCCAGGCGCC TCCCCTTTGC CGGGTTTGAT TTGCGTGGGT 2700 | var(2653):[C:0.01] TTTCTCCGTA CAGCCCTGGT TTTGCAGATG GGAGAGCCAG AAACGCAGAA 2750 AAGTTAACTT ATTCGAGGTT GCAGGGCGTG GACACGCACA GTCCTTTTTC 2800 CTCCACCCAC TTCTGCCCGG GTAAATTAGA AAACTCACTG AAGAAAAGAT 2850 GAGTCAGAGA AGGTGTGGGG GAGGGGCAGA GGTTGGGTGA GCCTGCCTCG 2900 CATCATTTCC TTTCTGTCTC GGAATATGCT TTTCACGGCT GTCTGAGAGT 2950 | var(2938):[T:0.01] AATACTAGCA TTCAGTAACT CCTACCCAGG GGCTTACAGT GTGCCGCTTA 3000 CCCTTGTAAC TGCCAAATAC AATTTTCGCA GTAGCCCTGT GGCTTAGATA 3050 | REPEAT CTGTTAGCTA TCACTGTTCC CATTTTACAG AGGACAGGAC TGTGGCTCAC 3100 AGGTTAAGTG GCTTTGTCGA AATGCGCAGC CGATAACTGA CGGAGCTAGG 3150 CTTGAGCCAA GCAGTCCGGC CTCCGGATGG GTAGTGTTAG CCACTACACT 3200 | var(3179):[A:0.01] GCCTCTCTGG TCAAGTTCAT TGTGGAGTGG CTTCCTGTCC TGCTCTCGGT 3250 CACTCCCTCT CCACCCTCGC CTGTGGATTG CAGCAGCTTC CAGGATAAAA 3300 | var(3268):[:0.01] AAGAAACCCT GAGTACAGCA GAGTTTCTCA GCCCTACCCC CCTTGTTCTC 3350 AGAGTCGGGA GAGGCTTGGG AGTGCTCTGG GGACGCCTCT CAGAGGCTTC 3400 AAGCTGTAGC TTGGAATCAG CCATTCAGTC ACCAATCAGA TAGGGCCTAA 3450 ATGTGTCACC ATGGGTTTCA CTCTGTAAAG ACTGGTGCCT GTTGGGGACA 3500 GGATGGACAG AACAGCTCTC TGCCTGAGAG CAGTCAAGTC CAGATTTTAA 3550 AAAAAATCAG TACTGAACAA ACAAAACAGG ACGTAGAAAA ATCGGGTTTT 3600 ATGGATATTT AATGTCTGGA AAAACACTGA TAAATTGCAT TTTAAAGGCG 3650 GTCTACGAAA CATAGCTGAC ATTTGAGATG TATGTGTGCT TGGTTTTATT 3700 TATATCGTCA TGTAGTTACT GTGTGCTGGG AAAAGTACAC CAGAAGGTGA 3750 GCGGTGGGTA TGGACAGGTT GGTAGCGGGC GACTCTGCCT TCCTCCCCAG 3800 | var(3777):[A:0.01] | var(3785):[:0.01] AAGTTCAGCA TAGCGGTTAA GGGTCGACTC TGGCACCACA CTCTTAGGGT 3850 | REPEAT TTCAGAACAT GGCTCTGCCA TCGTCTAGCT ACACGATCTC AGGAATGTCC 3900 ATTAGCTTCC CTGTGCCTCA ATTTCCTCAT CTGTACAGTC ATGGTAACAC 3950 AGTGCCCAGC CCACAGGGCT GTCAGAGCTG CGGGAGCTGG TACACCTGCC 4000 AACGGTGTCT CAGAATTGCC AGTAGTCCAA GCAGCACCCT GTCCTGCCTC 4050 TCCTTTCCTC TCTTCACATT CCAGAAGCGG CCTTTTATGG TCTTGTGACC 4100 AGCTCCCTGA TCTCAGTGGT GACGTCAGCA GATGAGGAGT ATGGTAGCCA 4150 GGGACTGAAG ACTGGTGGTC ACTCGGGGCA GCTTTCTAAA TAACAATTGG 4200 AGTGCCTACT AGTTTCCTGT GATTGCCATA ACAAATGATC ACAAATCTGG 4250 | REPEAT TGGCCTGAAG CAATAGAAAT CTACCCCCTC AATCTGGAGG CCAGAAATCT 4300 GAATAAGCAG GGTGCCACAG ACCGGCACAC CCTCGGAATG CTGTTGGGGA 4350 | var(4334):[T:0.01] GGCTCCTTCC GGGTCTCGTC CGCTTTGTGG TGGCTCCAGG CATTCTTTGA 4400 | var(4361):[A:0.01] | var(4392):[G:0.01] CTTGTGGCCG CTTCACTCCA GGCTCACACG GCCTTCCCTG TGTGTCTCCT 4450 | var(4429):[T:0.02] GCAAGGATAC CTATCATTGG TGCATCCAGG TCATCCAGGA TGATCTCCTC 4500 | var(4498):[:0.01] TCAAGACCCT CAGCTTACCT TTGCAAAGAT GCTTTTTCCA AAGAACATTC 4550 ATGGTTTCAG CAATTTCACG TGAACATACC TTGGGGTGAC ATCGTTCAGC 4600 CTGCTGTAGG GCAGGATGTG GGATCAACCC TATTTTCTTC CCTCCCACAA 4650 CTCCCCAGCC CCTCCCTCAG TGTCTCCTGC TCTAAGTAGG TAGCTCCACT 4700 | var(4681):[C:0.45] | var(4694):[T:0.02] | var(4698):[G:0.44] ACAACTTCCT TTGGCACTTG AGTCTTCAGT GGGCCACGCC TCCTAGGACA 4750 GTATTAGAGA GCAGGGGGTT TGGCTGAGGT GGAATCAGGC CACTCTTGGG 4800 CATTTGGTGA CAGCCCCTTT GCTGCCAGGC GACTCTAGCC TCTACAGAGG 4850 | var(4810):[:0.21] | var(4846):[G:0.01] ACCTCGTGTA GGCACCTCTG TCCACTCAGC ACTTGGCGTC TGTGCTGAAA 4900 AGCCCTAGGG AGGATTGTGG GGTCGCTTGT CTCCAAACCT ATGGTAAACC 4950 | var(4923):[C:0.08] GTTCTGTTCT TTCCTTCCCA GACCTGTGTG CAGCATTTAA CGTCATATGT 5000 | Exon 2 D L C A A F N V I C 105 GATAATGTGG GGAAAGATTG GAGAAGGCTG GCTCGTCAGC TCAAAGTCTC 5050 | var(5009):[A:0.01] D N V G K D W R R L A R Q L K V S 122 AGACACCAAG ATCGACAGCA TCGAGGACAG ATACCCCCGC AACCTGACAG 5100 D T K I D S I E D R Y P R N L T 138 AGCGTGTGCG GGAGTCACTG AGAATCTGGA AGAACACAGA GAAGGAGAAC 5150 E R V R E S L R I W K N T E K E N 155 GCAACAGTGG CCCACCTGGT GGGGGCTCTC AGGTCCTGCC AGATGAACCT 5200 A T V A H L V G A L R S C Q M N L 172 GGTGGCTGAC CTGGTACAAG AGGTTCAGCA GGCCCGTGAC CTCCAGAACA 5250 V A D L V Q E V Q Q A R D L Q N 188 GGAGTGGGGC CATGTCCCCG ATGTCATGGA ACTCAGACGC ATCTACCTCC 5300 R S G A M S P M S W N S D A S T S 205 GAAGCGTCCT GATGGGCCGC TGCTTTGCGC TGGTGGACCA CAGGCATCTA 5350 | UTR E A S 208 CACAGCCTGG ACTTTGGTTC TCTCCAGGAA GGTAGCCCAG CACTGTGAAG 5400 ACCCAGCAGG AAGCCAGGCT GAGTGAGCCA CAGACCACCT GCTTCTGAAC 5450 TCAAGCTGCG TTTATTAATG CCTCTCCCGC ACCAGGCCGG GCTTGGGCCC 5500 TGCACAGATA TTTCCATTTC TTCCTCACTA TGACACTGAG CAAGATCTTG 5550 TCTCCACTAA ATGAGCTCCT GCGGGAGTAG TTGGAAAGTT GGAACCGTGT 5600 CCAGCACAGA AGGAATCTGT GCAGATGAGC AGTCACACTG TTACTCCACA 5650 GCGGAGGAGA CCAGCTCAGA GGCCCAGGAA TCGGAGCGAA GCAGAGAGGT 5700 | REPEAT GGAGAACTGG GATTTGAACC CCCGCCATCC TTCACCAGAG CCCATGCTCA 5750 ACCACTGTGG CGTTCTGCTG CCCCTGCAGT TGGCAGAAAG GATGTTTTGT 5800 CCCATTTCCT TGGAGGCCAC CGGGACAGAC CTGGACACTA GGGTCAGGCG 5850 | var(5833):[A:0.01] | var(5850):[C:0.03] GGGTGCTGTT GTGGTGGGGA GAGGCATGGC TGGGGTGGGG GTGGGGAGAC 5900 | var(5860):[:0.54] CTGGTTGGCC GTGGTCCAGC TCTTGGCCCC TGTGTGAGTT GAGTCTCCTC 5950 TCTGAGACTG CTAAGTAGGG GCAGTGATGG TTGCCAGGAC GAATTGAGAT 6000 AATATCTGTG AGGTGCTGAT GAGTGATTGA CACACAGCAC TCTCTAAATC 6050 TTCCTTGTGA GGATTATGGG TCCTGCAATT CTACAGTTTC TTACTGTTTT 6100 GTATCAAAAT CACTATCTTT CTGATAACAG AATTGCCAAG GCAGCGGGAT 6150 CTCGTATCTT TAAAAAGCAG TCCTCTTATT CCTAAGGTAA TCCTATTAAA 6200 ACACAGCTTT ACAACTTCCA TATTACAAAA AATTTTCTAT TCCTGTTGGT 6250 | var(6223):[C:0.46] GGTTCTTTCA TTTTGGATAT GCTGGATATT CCCAGTACAG CCAGTTTGAG 6300 | var(6259):[:0.01] | var(6283):[T:0.31] GATCCCTGTC AAGGGCTCCA ACCTGGGAGG GGTGGCTGGA TTTCCTGACA 6350 GCTCGCTAGC TGCTCATGAG CAGTGTCTGC CCTTAGCAAA CAGTGGTCTG 6400 CTAGGGTAGC TTTTGCCGCT CTTAGAATTT GCCTGCACCA CCAACAGTAT 6450 CAGAATCAAA GCCAAGTGGC TATTCTCTGT CCCAGTTCAC CAGCTATGAC 6500 CTTGGGAAAG TCCAGTGTGC CGTCCCATAG GTGGGATCTT AGCCAAGGCC 6550 GCAGGACACT GTCCCCAGTA AGCCGTGGAC CCCGGCCTTT AAGCCCCTCC 6600 ACACCTTCAC CTGACGCTTC