LOCUS DUSP1 6585 bp DNA linear PRI 22-NOV-2005 DEFINITION Homo sapiens DUSP1 dual specificity phosphatase 1 (DUSP1) gene, complete cds. ACCESSION DUSP1 VERSION tmp KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6585) AUTHORS Livingston,R.J., Rieder,M.J., Shaffer,T., Bertucci,C., Baier,C.N., Rajkumar,N., Willa,H.T.., Daniels,M., Downing,T.K., Stanaway,I.B., Nguyen,C.P., Gildersleeve,H., Cassidy,C.M., Johnson,E.J., Swanson,J.E., McFarland,I., Yool,B., Park,C. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (22-NOV-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..6585 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 74 /frequency="0.28" /replace="T" variation 105 /frequency="0.28" /replace="A" variation 208 /frequency="0.06" /replace="C" variation 331 /frequency="0.24" /replace="T" variation 527 /frequency="0.98" /replace="" variation 530 /frequency="0.02" /replace="G" variation 746 /frequency="0.33" /replace="A" variation 793 /frequency="0.19" /replace="T" repeat_region 916..1004 /rpt_family="MIR" /rpt_type=dispersed variation 1059 /frequency="0.03" /replace="T" variation 1078 /frequency="0.01" /replace="A" variation 1143 /frequency="0.20" /replace="T" variation 1198 /frequency="0.23" /replace="T" variation 1297 /frequency="0.01" /replace="A" variation 1410 /frequency="0.30" /replace="" variation 1480 /frequency="0.01" /replace="T" gene 1496..4598 /gene="DUSP1" mRNA join(1496..2110,2390..2535,2902..3121,3564..4598) /gene="DUSP1" /product="dusp1" variation 1517 /gene="DUSP1" /frequency="0.01" /replace="T" CDS join(1744..2110,2390..2535,2902..3121,3564..3934) /gene="DUSP1" /codon_start=1 /product="DUSP1 dual specificity phosphatase 1" /translation="MVMEVGTLDAGGLRALLGERAAQCLLLDCRSFFAFNAGHIAGSV NVRFSTIVRRRAKGAMGLEHIVPNAELRGRLLAGAYHAVVLLDERSAALDGAKRDGTL ALAAGALCREARAAQVFFLKGGYEAFSASCPELCSKQSTPMGLSLPLSTSVPDSAESG CSSCSTPLYDQGGPVEILPFLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHY QYKSIPVEDNHKADISSWFNEAIDFIDSIKNAGGRVFVHCQAGISRSATICLAYLMRT NRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTS TTTVFNFPVSIPVHSTNSALSYLQSPITTSPSC" variation 1909 /gene="DUSP1" /frequency="0.02" /replace="A" variation 1911 /gene="DUSP1" /frequency="0.01" /replace="G" variation 2118 /gene="DUSP1" /frequency="0.11" /replace="G" variation 2164 /gene="DUSP1" /frequency="0.01" /replace="A" variation 2270 /gene="DUSP1" /frequency="0.01" /replace="" variation 2660 /gene="DUSP1" /frequency="0.02" /replace="G" variation 2702 /gene="DUSP1" /frequency="0.22" /replace="G" variation 2786 /gene="DUSP1" /frequency="0.01" /replace="T" variation 2947 /gene="DUSP1" /frequency="0.03" /replace="C" variation 2988 /gene="DUSP1" /frequency="0.15" /replace="C" repeat_region 3253..3384 /rpt_family="MIR" /rpt_type=dispersed variation 3287 /gene="DUSP1" /frequency="0.01" /replace="A" variation 4567 /gene="DUSP1" /frequency="0.01" /replace="G" variation 4608 /frequency="0.24" /replace="T" variation 4827 /frequency="0.29" /replace="A" variation 4943 /frequency="0.02" /replace="C" variation 5072..5074 /frequency="0.96" /replace="" misc_feature 5134..5713 /note="Region not scanned for variation" repeat_region 5184..5418 /rpt_family="Alu" /rpt_type=dispersed variation 5795 /frequency="0.01" /replace="A" variation 5829 /frequency="0.46" /replace="C" variation 5831 /frequency="0.01" /replace="T" variation 6026 /frequency="0.15" /replace="A" variation 6193 /frequency="0.01" /replace="T" variation 6354 /frequency="0.12" /replace="T" variation 6533 /frequency="0.01" /replace="A" BASE COUNT 1466 a 1770 c 1733 g 1616 t ORIGIN 1 ttctagaaga atccaggcag aacatttgcg caggcgaaaa cacacaagct aagcgaggca 61 aatgcagaag ttgccactgg tgatacagct cgcacagcga cgacgcaggg tggccagcga 121 aatcccctcc cccaggaggg gaggaaaccg cagaatgttc ctgactcggc acccgggcgg 181 gtggcgcaat gtttatgttt gtgtacctag cgcgtcgcgt cgctgcagca ggctccgctg 241 tccagggggc cgtcactggg actcagggca cggagatcgc tgggcggggc gggggtcttc 301 ccaagtgttg cgatccaggt cctggcaatc cgcccacaat ggcccgggat tggattttgc 361 tttcggccta taacggccgc gacgacaggg agcgagggtt gtggccggct tctgttccgg 421 gttggaggcc cccagcccag cgcttagtgg gcgctcactg tgtatactgc ctatttgtat 481 aataaagaaa gggatggaga agctcagtct ggagccaagg tgacaggaaa cgtgtcgggc 541 ggcccctggg gggcgccgtc gagtcgcgct gcgggtcgcc cctcacccct ccaaacgcca 601 aaccctggaa tccactgcgg ggccttgcga cccctcaccg ggatttcagc cccctgacct 661 gcctcccttg gctccaagtc ttccgggggc cacaagacta ggaatagcat tatttcccgg 721 tgggagtttg cttgctcaca ctttcgtggc aaatgtagat attttaaagc caccttaaag 781 aaaagtctgg gaaacaggaa agcattgccc tgaacctctc cgccccaact cgctcgagtc 841 ggtcttggta gggacgactt ttctatcggc agagttgttc atttttctct aaacttcatc 901 ttaggcgcct atttgctgcc cccaccccag tagtgtggtt ctgggcaagt cagtcgcttc 961 gcctggggaa cctcagtttc cccgcctgtt agtgatgagg aaatgaggaa aaggggcaca 1021 agagtatgca aaagcacagg aagccccttt cggttcaggt cggcggccga ggggcacggg 1081 gaaggggact cggggaggga gagagggagg agcggcgagg ccaaggcagg tggcacgtcg 1141 cccgttctcc cggccgctcg catcccggag gtcagcctca gctggcagcg agccctcctc 1201 ctccccgctg ggcctggagc gcggcgcggg tccggtccct ggggacgcgc caagagcagg 1261 ccggacagca gggcgggggc cgggccgcga gccagcgcgc ggcgagcgga cccagctccg 1321 aggctgatga cgtctccccc tctggctcgg cggcgcctgg cctggcaggg cgggtgacgt 1381 caccgccccg tcacgtgatc accattcaaa caaacacccc cccctccccc tgcgcgcggg 1441 tctggcccgc cccgtccccc agaggccgca tataaacgcg ctccccgggc caggctcgct 1501 gcgaaggaca tttgggctgt gtgtgcgacg cgggtcggag gggcagtcgg gggaaccgcg 1561 aagaagccga ggagcccgga gccccgcgtg acgctcctct ctcagtccaa aagcggcttt 1621 tggttcggcg cagagagacc cgggggtcta gcttttcctc gaaaagcgcc gccctgccct 1681 tggccccgag aacagacaaa gagcaccgca gggccgatca cgctgggggc gctgaggccg 1741 gccatggtca tggaagtggg caccctggac gctggaggcc tgcgggcgct gctgggggag 1801 cgagcggcgc aatgcctgct gctggactgc cgctccttct tcgctttcaa cgccggccac 1861 atcgccggct ctgtcaacgt gcgcttcagc accatcgtgc ggcgccgggc caagggcgcc 1921 atgggcctgg agcacatcgt gcccaacgcc gagctccgcg gccgcctgct ggccggcgcc 1981 taccacgccg tggtgttgct ggacgagcgc agcgccgccc tggacggcgc caagcgcgac 2041 ggcaccctgg ccctggcggc cggcgcgctc tgccgcgagg cgcgcgccgc gcaagtcttc 2101 ttcctcaaag gtacgccctc ggggaagctc ggggcgggcc gcacacccct gaggttttgc 2161 ccggtacccc tggctctcgg ctcccggggg atcgccccac ctgcagcgcg tgggcgctgg 2221 agtacattta tctctggaac ttgtcattgg ctttgtttgg ctctggaaac aaagacttgc 2281 ctgggccttt ccgatgtaaa cttccagccc ttggtgggtg ggggagttgt atgaaggtgc 2341 cgtgtcccgg tgtcactaat ggggaaaaaa aatgtctttg tattcccagg aggatacgaa 2401 gcgttttcgg cttcctgccc ggagctgtgc agcaaacagt cgacccccat ggggctcagc 2461 cttcccctga gtactagcgt ccctgacagc gcggaatctg ggtgcagttc ctgcagtacc 2521 ccactctacg atcaggttag taggtgtccc tgccacaggg aagaagtaag aactggcaaa 2581 ggcatggaag agtagtgcca gggagaatat agaaagtgac ctgcagcatt atttataacg 2641 gaggggacac agggatatga tttattccac agttaagtgg tctgacggag ccgagtctcc 2701 aattgtaggc tctacggaaa tgaacttgct ggtcctgccc aggcaaatgg gcttagttcc 2761 ctatttattt atcctccagc aacagaactg agttcactcg gtatctgaaa ttgacttttc 2821 cagcagaaag tttttgtggg tatgggcact ggccttggct ttgagcaagc ttgatgaatg 2881 ttggatattt ctggatttca gggtggcccg gtggaaatcc tgccctttct gtacctgggc 2941 agtgcgtatc acgcttcccg caaggacatg ctggatgcct tgggcataac tgccttgatc 3001 aacgtctcag ccaattgtcc caaccatttt gagggtcact accagtacaa gagcatccct 3061 gtggaggaca accacaaggc agacatcagc tcctggttca acgaggccat tgacttcata 3121 ggtaaatgga atggatgcct ggggcttttc tgcctttctc ttctcatttt agccactaag 3181 cccaacctct gtggcaagag cttgaagttt tctgagcctt cttccacaca ttcagtatca 3241 gtctggtgtg ggcaacattc ctgtaaaata tgaatttgat tcgatgtccc actttacaga 3301 tttgcaaagt ggggctcaca aagttgaatt gactggtctg agatctatct gctaagtgga 3361 aatccccagt ctgagtttaa atcctgtgcc atcctttgca cagtgcccac gttgcctcca 3421 tgaacagtat ccatgtgatg gcatgtggtg atgttgacca tttctagaca agacacacat 3481 gacctttctc agatacactg tacctgggct tggggtggtt ctcctgaact ctcaagtaac 3541 cagccgctcc tttggttttc cagactccat caagaatgct ggaggaaggg tgtttgtcca 3601 ctgccaggca ggcatttccc ggtcagccac catctgcctt gcttacctta tgaggactaa 3661 tcgagtcaag ctggacgagg cctttgagtt tgtgaagcag aggcgaagca tcatctctcc 3721 caacttcagc ttcatgggcc agctgctgca gtttgagtcc caggtgctgg ctccgcactg 3781 ttcggcagag gctgggagcc ccgccatggc tgtgctcgac cgaggcacct ccaccaccac 3841 cgtgttcaac ttccccgtct ccatccctgt ccactccacg aacagtgcgc tgagctacct 3901 tcagagcccc attacgacct ctcccagctg ctgaaaggcc acgggaggtg aggctcttca 3961 catcccattg ggactccatg ctccttgaga ggagaaatgc aataactctg ggaggggctc 4021 gagagggctg gtccttattt atttaacttc acccgagttc ctctgggttt ctaagcagtt 4081 atggtgatga cttagcgtca agacatttgc tgaactcagc acattcggga ccaatatata 4141 gtgggtacat caagtccatc tgacaaaatg gggcagaaga gaaaggactc agtgtgtgat 4201 ccggtttctt tttgctcgcc cctgtttttt gtagaatctc ttcatgcttg acatacctac 4261 cagtattatt cccgacgaca catatacata tgagaatata ccttatttat ttttgtgtag 4321 gtgtctgcct tcacaaatgt cattgtctac tcctagaaga accaaatacc tcaatttttg 4381 tttttgagta ctgtactatc ctgtaaatat atcttaagca ggtttgtttt cagcactgat 4441 ggaaaatacc agtgttgggt ttttttttta gttgccaaca gttgtatgtt tgctgattat 4501 ttatgacctg aaataatata tttcttcttc taagaagaca ttttgttaca taaggatgac 4561 ttttttatac aatggaataa attatggcat ttctattgaa atttcaacgc ttttatttct 4621 ttggcaacca cacccaatcc ctctcccact agtgaactag ggaagaattt cgacaagggc 4681 ctgcagaatg tgttgagatc tgatcccatg ccctgtggtg gcccgttggt cccatgaaat 4741 ggctgggttg caagggagga agacaagtga gtatcatgaa acaccggacg ctacagctga 4801 actcttagta ttggatcagt gtgtctgccc atgcccattt tagcggctct gtaacctacc 4861 atgtcaccca ggatgccaag gtgtccccag agccaaagct aggaggaaat agccacttgt 4921 ctggattgcc ttcttcattt aataccctcc tcaggttaat ataaaaagtc gccttcccat 4981 ctctgagctg tgctggagtt atgaggagac aaaagttttt ccaaacacat gacataaggc 5041 aggtgtgtgc tacctgcccc tagagaaact cttgagcaag gccttttgca aatgagatgc 5101 tgagacccag catggctaag tggcagaaat aggagaattg gaatctacat ctgtttcaga 5161 ctttcacttg cccgtctcat ggcttttttt tttttttttt tttagacgga gtctcactct 5221 gtcacccagg ctggagtgta ctggtgtgag ctcggctcac tgcaacctcc gcctgccagg 5281 ttcaagccat tctcctgcct cagcttccta agtagctggg attacgggtg cgcgtcacca 5341 tgcccggcta atttttgtat ttttagtaga gatgggggtt tcaccatgtt ggccaggctg 5401 gtctcgaact cctgacctat ctttttgctt ttaaaaaggc ttttgttttt gtgaaaattt 5461 aaatacattg gcaaaaaaaa aaaaaaagaa agaaaaaaaa tccaagcact ataagcaaat 5521 accatgtaaa gaaatcaccc gcaacagccc atccccaacc tgaccattgc taacattgtg 5581 gaggacattc acgctggcat ttctgcatat agacatggca tttttggtag ttgcctcctt 5641 catgtcacct gctgctctga tttcatagtt ttgttgagat aagcaattaa acctgacttg 5701 ttctaggata atattctgaa tttgtactcc tttgccaagc aggcaaaaaa cagaagagat 5761 gtaattgcta ccaatccata atccagtcta taatgttgcg ttaagaaaca gcgaagctct 5821 tggattactg gccccttagc gccccacccc actctttgtt tctggacaaa gtgctatggg 5881 aagcagaaaa ggaaatatcc cattcgcctt atccatgagc accctgtgct atggttctgg 5941 tcctgtcctg ttgttcaagg tctttacgca gaatcagtgt ccttgacttt gcccctgtgg 6001 ctcactgtct gccacttgac tcccagggtc tgaaagatcc ctgtgttcta agttctaaga 6061 acttaccctg ggctggcaag ctcatttcct cagctgggtt tccgattaca agtatgttca 6121 tgcctatcaa aacaaatcgt acccagtgtt tttatcaaag cctagaaatt tactattgta 6181 aatatctctc tccgtggaaa tgtaccagcg acatcgagtc tgtgacagat gccatggctg 6241 acttccccgt gggctagggc cttcgctttc tgcttggcag gcactggctg aaccaaaatt 6301 aatctccagt gtgatccacg cagtggaaaa atacagcggc tgcctaaggg agccgccagt 6361 gaaaacaagt cactcacttc tcccggctca agccactctg cctcatgcca gccctgagag 6421 ccaggaatga tgacccctga tccccatgta ccggagtcac tgtgttcaga ccctccagaa 6481 aaatctcata tttggcctca gactgctttc cttgggaaaa aattaatacc tcgtgatgaa 6541 agatacttaa agtctattaa tgtgtttccc aggaagagat tgaaa //