************************************************************* **** **** **** Output from PHASE v2.0.2 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /afs/nickerson/home/bhowie/Desktop/phase.2.0.2.linux/PHASE /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.prettybase.inp /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.phase.out_freqs : haplotype frequency estimates /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.phase.out_pairs : most likely haplotype pairs for each individual /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.phase.out_recom : estimates of recombination parameters /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 62 Positions of loci: 282 317 782 815 1434 1783 2114 3086 3126 3293 3308 3393 3755 4059 4067 4406 4494 5733 6090 6165 6270 6377 6528 6620 6709 6727 6748 6831 7247 7429 7430 7546 8087 8095 9900 9929 10024 10767 10892 11090 11258 12175 13075 13131 13216 13241 13249 13264 13327 13388 13514 14317 14396 15185 15200 15248 15342 15390 15528 15839 16413 16768 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file /afs/nickerson/project/egp/dtrxx/stats_dir/dtrxx.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCCGGCGCCGTAATCGACACCCCAGTCG 3.000000 2 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCCGGCGCCGTGATCGATACCCCAGTCG 8.000000 3 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCCGGCGCGGCGGTTAGCACCCCATCCG 1.000000 4 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCCGGGGCCGCGGTTAGCACTCCATCCG 1.000000 5 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCCGGGGCGGCGGTTAGCACTCCATCCG 2.000000 6 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCCGACGCCGTGATCAGCACCCCATCCG 1.000000 7 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCGCTGGCGCCGTGATCGACGCCCCATCCG 1.000000 8 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCCCCGGCGCCGTGATCAGCACCCCATCCG 17.000000 9 CCGCAACCGCCCDAICCCATTAGTGGCCAGCCGCCCCGGCGCCGTGATCAGCACCCTATCCG 1.000000 10 CCGCAACCGCCCDAICCCATTAGTGGCCGGCCGCCCCGGCGCCGTGATCAGCACCCCATCCG 1.000000 11 CCGCAACCGCCCDAICCCGTTAGTGGCCAGCCGCGCCGGCGCCGTAATCGACACCCCAGTCG 3.000000 12 CCGCAACCGCCCDAICCTATTAGTGGCCAGCCGCGCCGGCGCCGTAATCGACACCCCAGTCG 2.000000 13 CCGCAACCGCCCDAICCTATTAGTGGCCAGCCGCGCCGGCGCCGTGATCGACACCCCAGTCG 2.000000 14 CCGCAACCGCCCDAICCTATTAGTGGCCAGCCGCGCCGGCGCCGTGATCGATACCCCAGTCG 3.000000 15 CCGCAACCGCCCDAICCTATTAGTGGCCAGCCGCGCCGGCACCGTGATCAGCACCCCATCCG 6.000000 16 CCGCAACCGCCCDAICCTATTAGTGGCCAGCCGCGCCGGGGCGGCGGTTAGCACTCCATCCG 4.000000 17 CCGCAACCGCCCDAICCTATTAGTGGCCAGCCGCCCCGGCGCCGTGATCAGCACCCCATCCG 1.000000 18 CCGCAACCGCCCDADCCTATTAGTGGCCAGCCGCGCTGGCGCCGTGATCGACGCCCCATCCG 2.000000 19 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 2.000000 20 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCACCGTGATCAGCACCCCATCCG 1.000000 21 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGGGCGGCGGTTAGCACTCCATCCG 1.000000 22 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCACGTCGGCGCCGTAATCGACACCCCAGTCG 1.000000 23 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCACGTCGGCGCCGTAATCGACACCCCAGTGG 1.000000 24 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGCGCCGTAATCGACACCCCAGTCG 3.000000 25 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGCGCCGTGATCAGCACCCCATCCG 3.000000 26 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGCGCCGTGATCGATACCCCAGTCG 1.000000 27 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGGGCCGCGATCAGCACCCCATCCG 1.000000 28 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGGGCCGTGATCAGCACCCCATCCG 1.000000 29 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGGGCGGCGGTTAGCACTCCATCCG 15.000000 30 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCATGCCGGGGCGGTGGTTAGCACTCCATCCG 1.000000 31 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCCGCCCCGGCGCCGTGATCAGCACCCTATCCG 1.000000 32 CCGTAGCCGCCCDAICCCAAAGGGGAGCGGCGACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 33 CCGTAGCCGCCCDAICCCAAAGAGGAGCGGCCATGCCGGGGCGGCGGTTAGCACTCCATCCG 3.000000 34 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 43.000000 35 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCCGTCG 2.000000 36 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACATCCCAGTCG 1.000000 37 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAAGCGACACCCCAGTCG 2.000000 38 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTGATCAGCACCCCATCCG 2.000000 39 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCATAATCGACACCCCAGTCG 6.000000 40 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCGGCGGTTAGCACCCCATCCG 2.000000 41 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCACCGTGATCAGCACCCCATCCG 1.000000 42 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGGGCGGCGGTTAGCACTCCATCCG 2.000000 43 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGGGCGGCGGTTAGCACTCCATCCA 1.000000 44 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACGCTGGCGCCGTGATCGACGCCTCATCCG 1.000000 45 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACCCCGGCGCCGTGATCAGCACCCCATCCG 1.000000 46 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACCCCGGCGCCGTGATCAGCACTCCATCCG 1.000000 47 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGCCACCCCTGCGCCGTGATCAGCACCCCATCCG 1.000000 48 CCGTGGCCGCCCDAICCCAAAGGGGAGCGGGCACGCCGGGGCGGCGGTTAGCACTCCATCCG 1.000000 49 CCGTGGCCGCCCDAICCCAAAGGGGAGCGACCACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 50 CCGTGGCCGCCCDAITCCAAAGGGGAGCGGCCACGCCGGCGGCGTAATCGACACCCCAGTCG 2.000000 51 CCGTGGCCGCCTDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTGATCAGCACCCCATCCG 1.000000 52 CCGTGGCCGTCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 53 CCGTGGCCACCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 54 CCGTGGCTGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 55 CCGTGGTCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 5.000000 56 CCGTGGTCGCCCDAICCCAAAGGGGAGCGGCCACGCCGGGGCGGCGGTTAGCACTCCATCCG 1.000000 57 CCATAGCCGCCCDAICTCAAAGGGAAGCGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 58 CCATAGCCGCTCDCICTCAAAGGGAAGCGGCCACCCCGGCGCCGTGATCAGCACCCCATCCG 1.000000 59 CGGTAGCCGCCCDAICCCAAAGGGGAGTGGCCACGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 60 CGGTAGCCGCCCtAICCCAATGGGGGCCGGCCGCGCCGGCGCCGTAATCGACACCCCAGTCG 1.000000 61 TCGCAACCGCCCDADCCTATTAGTGGCCAGCCGCGCTGGCGCCGTGATCGACGCCCCATCCG 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (16,34) P002: (12,34) P003: (15,60) P004: (34,34) P005: (8,15) P006: (15,33) P007: (8,29) P008: (34,46) P009: (2,8) P010: (29,53) P011: (2,34) P012: (49,55) P013: (8,36) P014: (34,34) P015: (8,24) P016: (16,27) P017: (25,26) P018: (8,44) P019: (33,34) P020: (29,29) P021: (11,34) P022: (8,8) P023: (2,14) P024: (8,37) P025: (29,47) P026: (29,34) P027: (8,15) P028: (1,39) P029: (14,35) P030: (25,31) P031: (4,29) P032: (41,55) P033: (8,55) P034: (8,42) P035: (24,55) P036: (21,34) P037: (29,34) P038: (18,61) P039: (34,34) P040: (34,38) P041: (29,34) P042: (11,40) P043: (2,29) P044: (2,16) P045: (29,48) P046: (34,39) P047: (29,29) P048: (5,56) P049: (16,17) P050: (2,34) P051: (8,34) P052: (29,39) P053: (9,34) P054: (15,39) P055: (25,55) P056: (3,23) P057: (38,59) P058: (34,34) P059: (11,50) P060: (24,30) P061: (18,50) P062: (1,29) P063: (2,14) P064: (19,58) P065: (51,57) P066: (34,37) P067: (8,28) P068: (34,34) P069: (34,43) P070: (8,34) P071: (34,54) P072: (34,34) P073: (10,42) P074: (13,20) P075: (12,32) P076: (34,34) P077: (34,52) P078: (1,33) P079: (5,34) P080: (13,34) P081: (8,34) P082: (6,34) P083: (34,45) P084: (8,39) P085: (34,39) P086: (2,34) P087: (7,40) P088: (19,35) P089: (15,22) P090: (34,34) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G (G) G C [G] G (C) (G) (G) T (T) (A) (G) C A C (T) C C A (T) (C) C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G (C) G C C G (T) (A) (A) T (C) (G) (A) C A C (C) C C A (G) (T) C G 0 P002 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C G C C G T [A] A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P003 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C [A] C C G T (G) A T C (A) (G) C A C C C C A (T) (C) C G C G G T A G C C G C C C t A I C C C A A T G G G G G C C G G C C G C G C C G G C G C C G T (A) A T C (G) (A) C A C C C C A (G) (T) C G 0 P004 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P005 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C [A] C C G T G A T C A G C A C C C C A T C C G 0 P006 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C [A] C C G T G A T C A G C A C C C C A T C C G C C G T A G C C G C C C D A I C C C A A A G A G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P007 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P008 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C (C) C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C C C C G G C G C C G T G A T C A G C A C (T) C C A T C C G 0 P009 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G 0 P010 C C G T A G C C (G) C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C (A) C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P011 C C G C A A C C G C C C D A I C C [C] A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P012 C C G T G G (C) C G C C C D A I C C C A A A G G G G A G C G A C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G (T) C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P013 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A (C) C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A (T) C C C A G T C G 0 P014 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P015 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P016 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G G G C (G) G C G (G) T (T) A G C A C (T) C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C (C) G C G (A) T (C) A G C A C (C) C C A T C C G 0 P017 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A [T] G C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A [T] G C C G G C G C C G T G A T C G A T A C C C C A G T C G 0 P018 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C (C) C (C) G G C G C C G T G A T C (A) [G] C (A) C C (C) C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C (G) C (T) G G C G C C G T G A T C (G) [A] C (G) C C (T) C A T C C G 0 P019 C C G T A G C C G C C C D A I C C C A A A G A G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P020 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P021 C C G C A A C C G C C C D A I C C C G T T A G T G G C C A G C C G C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P022 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G 0 P023 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G 0 P024 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A G C G A C A C C C C A G T C G 0 P025 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C (G) G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C [C] C C (T) G C G C C G T G A T C A G C A C C C C A T C C G 0 P026 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P027 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C [A] C C G T G A T C A G C A C C C C A T C C G 0 P028 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C (G) T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C (A) T A A T C G A C A C C C C A G T C G 0 P029 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C C G T C G 0 P030 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C (A) T G C C G G C G C C G T G A T C A G C A C C C (C) A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C (G) C C C C G G C G C C G T G A T C A G C A C C C (T) A T C C G 0 P031 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G G G C (C) G C G G T T A G C A C T C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C (G) G C G G T T A G C A C T C C A T C C G 0 P032 C C G T G G (C) C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C A C C G T G A T C A G C A C C C C A T C C G C C G T G G (T) C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P033 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T G G T C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P034 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C (C) C C G G (C) G C (C) G (T) G (A) T (C) A G C A C (C) C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C (G) C C G G (G) G C (G) G (C) G (G) T (T) A G C A C (T) C C A T C C G 0 P035 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G T C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P036 C C G T (A) G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T (G) G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P037 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P038 C C G C A A C C G C C C D A D C C T A T T A G T G G C C A G C C G C G C T G G C G C C G T G A T C G A C G C C C C A T C C G T C G C A A C C G C C C D A D C C T A T T A G T G G C C A G C C G C G C T G G C G C C G T G A T C G A C G C C C C A T C C G 0 P039 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P040 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T G A T C A G C A C C C C A T C C G 0 P041 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P042 C C G C A A C C G C C C D A I C C C G T T A G T G G C C A G C C G C G C C G G C G C (C) G (T) (A) (A) T (C) (G) (A) C A C C C C A (G) (T) C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C (G) G (C) (G) (G) T (T) (A) (G) C A C C C C A (T) (C) C G 0 P043 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P044 C C G C A A C C G C C C D A I C C (C) A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G C A A C C G C C C D A I C C (T) A T T A G T G G C C A G C C G C G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P045 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G (C) C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G (G) C A C G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P046 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C A T A A T C G A C A C C C C A G T C G 0 P047 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P048 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G T C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P049 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G 0 P050 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P051 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P052 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C A T A A T C G A C A C C C C A G T C G 0 P053 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C (C) C C G G C G C C G T (G) A T C (A) (G) C A C C C (T) A (T) (C) C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C (G) C C G G C G C C G T (A) A T C (G) (A) C A C C C (C) A (G) (T) C G 0 P054 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C [A] C C G T G A T C A G C A C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C A T A A T C G A C A C C C C A G T C G 0 P055 C C G T (A) G (C) C G C C C D A I C C C A A A G G G G A G C G G C C A (T) [G] C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T (G) G (T) C G C C C D A I C C C A A A G G G G A G C G G C C A (C) G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P056 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G (C) C G G C G C (G) G (C) (G) (G) T (T) (A) (G) C A C C C C A (T) (C) (C) G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G (T) C G G C G C (C) G (T) (A) (A) T (C) (G) (A) C A C C C C A (G) (T) (G) G 0 P057 C (C) G T (G) G C C G C C C D A I C C C A A A G G G G A G (C) G G C C A C G C C G G C G C C G T G A T C A G C A C C C C A T C C G C (G) G T (A) G C C G C C C D A I C C C A A A G G G G A G (T) G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P058 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P059 C C G C A A C C G C C C D A I C C C G T T A G T G G C C A G C C G C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I T C C A A A G G G G A G C G G C C A C G C C G G C G G C G T A A T C G A C A C C C C A G T C G 0 P060 C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C G G T G G T T A G C A C T C C A T C C G 0 P061 C C G C A A C C G C C C D A D C C T A T T A G T G G C C A G C C G C G C T G G C G C C G T G A T C G A C G C C C C A T C C G C C G T G G C C G C C C D A I T C C A A A G G G G A G C G G C C A C G C C G G C G G C G T A A T C G A C A C C C C A G T C G 0 P062 C C G (C) A (A) C C G C C C D A I C C C A (T) (T) (A) G (T) G (G) (C) C (A) G C C (G) (C) G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G (T) A (G) C C G C C C D A I C C C A (A) (A) (G) G (G) G (A) (G) C (G) G C C (A) (T) G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P063 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G 0 P064 C C (G) T A G C C G C (C) C D (A) I C (C) C A A A G G G (G) A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C (A) T A G C C G C (T) C D (C) I C (T) C A A A G G G (A) A G C G G C C A C C C C G G C G C C G T G A T C A G C A C C C C A T C C G 0 P065 C C (G) T (G) G C C G C C (T) D A I C (C) C A A A G G G (G) A G C G G C C A C G C C G G C G C C G T G A T C A G C A C C C C A T C C G C C (A) T (A) G C C G C C (C) D A I C (T) C A A A G G G (A) A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P066 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A G C G A C A C C C C A G T C G 0 P067 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A T G C C G G G G C C G T G A T C A G C A C C C C A T C C G 0 P068 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P069 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C (G) C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G G G C G G C G G T T A G C A C T C C A T C C (A) 0 P070 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P071 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C T G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P072 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P073 C C G C A A C C G C C C D A I C C C A T T A G T G G C C G G C C [G] C (C) C C G G (C) G C (C) G (T) G (A) T (C) A G C A C (C) C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C (G) C C G G (G) G C (G) G (C) G (G) T (T) A G C A C (T) C C A T C C G 0 P074 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A C A C C C C A G T C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C A C C G T G A T C A G C A C C C C A T C C G 0 P075 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C (C) G C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C (G) A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P076 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P077 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G T C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P078 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T A G C C G C C C D A I C C C A A A G A G G A G C G G C C A T G C C G G G G C G G C G G T T A G C A C T C C A T C C G 0 P079 C C G (C) (A) (A) C C G C C C D A I C C C A (T) (T) (A) G (T) G (G) (C) C (A) G C C (G) C G C C G G G G C G G C G G T T A G C A C T C C A T C C G C C G (T) (G) (G) C C G C C C D A I C C C A (A) (A) (G) G (G) G (A) (G) C (G) G C C (A) C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P080 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P081 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P082 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C C G (A) C G C C G T (G) A T C (A) (G) C A C C C C A (T) (C) C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G (G) C G C C G T (A) A T C (G) (A) C A C C C C A (G) (T) C G 0 P083 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C C C C G G C G C C G T G A T C A G C A C C C C A T C C G 0 P084 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C C C C G G C G C C G T G A T C A G C A C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C A T A A T C G A C A C C C C A G T C G 0 P085 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C A T A A T C G A C A C C C C A G T C G 0 P086 C C G C A A C C G C C C D A I C C [C] A T T A G T G G C C A G C C G C G C C G G C G C C G T G A T C G A T A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G 0 P087 C C G C A A C C G C C C D A I C C C A T T A G T G G C C A G C C G C G C (T) G G C G C (C) G (T) G (A) T (C) (G) [A] C (G) C C C C A T C C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C (C) G G C G C (G) G (C) G (G) T (T) (A) [G] C (A) C C C C A T C C G 0 P088 C C G T (A) G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T (G) G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C C G T C G 0 P089 C C G C A A C C G C C C D A I C C T A T T A G T G G C C A G C C G C G (C) C G G C (A) C C G T (G) A T C (A) (G) C A C C C C A (T) (C) C G C C G T A G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G (T) C G G C (G) C C G T (A) A T C (G) (A) C A C C C C A (G) (T) C G 0 P090 C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G C C G T G G C C G C C C D A I C C C A A A G G G G A G C G G C C A C G C C G G C G C C G T A A T C G A C A C C C C A G T C G END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 = = = C A ? = = = = = ? = = = = = T = T T A = T = G C = A ? ? ? G = = = = = = (G) ? = ? = (C) (G) (G) = (T) (A) (G) = = = (T) = = = (T) (C) ? ? = = = T G ? = = = = = ? = = = = = C = A A G = G = A G = G ? ? ? A = = = = = = (C) ? = ? = (T) (A) (A) = (C) (G) (A) = = = (C) = = = (G) (T) ? ? 0 P002 = = = C A ? = = = = = = = = = = = T = T T A = T = G C = A = = ? G = = = = = = = ? = = ? ? ? = = = = = = = = = = = = = = ? ? = = = T G ? = = = = = = = = = = = C = A A G = G = A G = G = = ? A = = = = = = = ? = = ? ? ? = = = = = = = = = = = = = = ? ? 0 P003 = C = C = A ? = = = = ? D ? ? = = T = T = A = T = = = = A = ? ? = = = = = = = = ? = ? = = (G) = = = (A) (G) = = = = = = = (T) (C) = ? = G = T = G ? = = = = ? t ? ? = = C = A = G = G = = = = G = ? ? = = = = = = = = ? = ? = = (A) = = = (G) (A) = = = = = = = (G) (T) = ? 0 P004 = = = = = ? ? = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = 0 P005 = = = = ? = ? = = = = = = = = = = C = = = = = = ? ? ? ? = = = ? ? ? C = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = T = = = = = = ? ? ? ? = = = ? ? ? G = = = = = ? = ? = = = = = = = = = = = = = = = = = = = 0 P006 = = = C = A ? = = = = = = = = ? = T = T T A G T = G C = A = = = G C = = = = = C ? = C ? ? ? ? ? ? = = = = = C = = = = = = ? = = = T = G ? = = = = = = = = ? = C = A A G A G = A G = G = = = A T = = = = = G ? = G ? ? ? ? ? ? = = = = = T = = = = = = ? 0 P007 = = = C = A = = = = = ? = = = = = = = T T A = T = G C = A = = ? G C C = = = = C ? = C = T = A = C = = = = = C = = = = = = = = = = T = G = = = = = ? = = = = = = = A A G = G = A G = G = = ? A T G = = = = G ? = G = C = G = T = = = = = T = = = = = = = 0 P008 = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = ? = = G = = = = = ? = = = = A = = = G A = = = (C) = = = G T = ? = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = ? = = C = = = = = ? = = = = G = = = A G = = = (T) = = = T C = ? 0 P009 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = G ? ? ? = = = = = G T ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = A ? ? ? = = = = = T C ? ? 0 P010 = = = = A = ? = (G) = = = = = = = = = ? ? = = = = = = = = = = = = = T ? ? ? = = G = = G = C G G = T A G = = = T = = = T C = = = = = = G = ? = (A) = = = = = = = = = ? ? = = = = = = = = = = = = = C ? ? ? = = C = = C = T A A = C G A = = = C = = = G T = = 0 P011 = = = C ? A = = = = = = = = = = = ? = T T A = T = G C = A = = = G = = = = = = = = = ? = = G = = = = = T = = = = = = = = = = = = = T ? G = = = = = = = = = = = ? = A A G = G = A G = G = = = A = = = = = = = = = ? = = A = = = = = C = = = = = = = = = = 0 P012 = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P013 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G ? C = = = = = = = = = = G = = = A G = = (C) = = = = T C = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A ? G = = = = = = = = = = A = = = G A = = (T) = = = = G T = = 0 P014 = = = = = = = = = = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = = = = ? ? = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = = = = ? ? = = = = = = = = = ? = ? = = = = = = = = = 0 P015 = = = C = A = = = = = = = = = = = = = T T A = T = G C = A = = = G C C = = = = = = = = = = G = = = A G = = = = = = = T C = = = = = T = G = = = = = = = = = = = = = A A G = G = A G = G = = = A T G = = = = = = = = = = A = = = G A = = = = = = = G T = = 0 P016 = = = C = A = = = = = = = = = = = T = T T A = T = G C = A = = = G C = = = = = = = = (G) = = = (G) = (T) = = = = = (T) = = = = = = ? = = = T = G = = = = = = = = = = = C = A A G = G = A G = G = = = A T = = = = = = = = (C) = = = (A) = (C) = = = = = (C) = = = = = = ? 0 P017 ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = A G C = = = = = = T C = ? ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = G A T = = = = = = G T = ? 0 P018 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = (C) = (C) = = = = = = = = = = = = (A) ? = (A) = = (C) = = = = = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = (G) = (T) = = = = = = = = = = = = (G) ? = (G) = = (T) = = = = = = 0 P019 = = = = A = = = = = = = = = = = = = = = = = A = = = = = = = = = = T = = = = = G = = G = C G G = T A G = = = T = = = T C = = = = = = G = = = = = = = = = = = = = = = = = G = = = = = = = = = = C = = = = = C = = C = T A A = C G A = = = C = = = G T = = 0 P020 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? 0 P021 = = = C A A = = = = = = = = = = = = G T T A = T = G C = A = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G G = = = = = = = = = = = = A A A G = G = A G = G = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P022 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P023 = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P024 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = C = = = = = = = = = = G = T = A G = = = = = = = T C = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = G = = = = = = = = = = A = G = G A = = = = = = = G T = = 0 P025 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = T ? ? ? (G) = G ? = G = C = G = T = = = = = T = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = C ? ? ? (T) = C ? = C = T = A = C = = = = = C = = = = = = = 0 P026 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = G = = G = C G G = T A G = = = T = = = T C = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = C = = C = T A A = C G A = = = C = = = G T = = 0 P027 = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = C = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = G = = = = = ? = ? = = = = = = = = = = = = = = = = = = = 0 P028 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = = = = = = = = = = (G) = = = ? = = = = = = = = = = = = = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = = = = = = = = = = (A) = = = ? = = = = = = = = = = = = = = 0 P029 = = = C A A = = = = = = = = = = = T = T T A = T = G C = A = = = ? = = = = = = = = = = = = G = = = = = T = = = = = A = = = = = = = T G G = = = = = = = = = = = C = A A G = G = A G = G = = = ? = = = = = = = = = = = = A = = = = = C = = = = = C = = = = 0 P030 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) T G = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) C C = = = = = = = = = = = = = = = = = = = = = (T) = = = = = 0 P031 = = = C = A = = = = = = = = = = = = = T T A = T = G C = A = = = G C = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = T = G = = = = = = = = = = = = = A A G = G = A G = G = = = A T = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = 0 P032 = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = G = = = A G = = = = = = = T C = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = A = = = G A = = = = = = = G T = = 0 P033 = = = C A A C = = = = = = = = = = = = T T A = T = G C = A = = = G = C = = = = = = = = = = G = = = A G = = = = = = = T C = = = = = T G G T = = = = = = = = = = = = A A G = G = A G = G = = = A = G = = = = = = = = = = A = = = G A = = = = = = = G T = = 0 P034 = = = C A A = = = = = = = = = = = = = T T ? ? T = G C = A = = = G = (C) = = = = (C) = = (C) = (T) = (A) = (C) = = = = = (C) = = = = = = = = = = T G G = = = = = = = = = = = = = A A ? ? G = A G = G = = = A = (G) = = = = (G) = = (G) = (C) = (G) = (T) = = = = = (T) = = = = = = = 0 P035 = = ? = A = C = = = = = = = = = = = = = = = = = = = = = = = = ? = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = G = T = = = = = = = = = = = = = = = = = = = = = = = = ? = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P036 = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = G = C G G = T A G = = = T = = = T C = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = C = T A A = C G A = = = C = = = G T = = 0 P037 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = ? = T = = = = = G = = G = C G G = T A G = = = T = = = T C = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = ? = C = = = = = C = = C = T A A = C G A = = = C = = = G T = = 0 P038 C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P039 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P040 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = G A = = = = = = = G T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = A G = = = = = = = T C = = 0 P041 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = G = = G = C G G = T A G = = = T = = = T C = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = C = = C = T A A = C G A = = = C = = = G T = = 0 P042 = = = C A A = = = = = = = = = = = = G T T A = T = G C = A = = = G = = = = = = = = = (C) = (T) (A) (A) = (C) (G) (A) = = = = = = = (G) (T) = = = = = T G G = = = = = = = = = = = = A A A G = G = A G = G = = = A = = = = = = = = = (G) = (C) (G) (G) = (T) (A) (G) = = = = = = = (T) (C) = = 0 P043 = = = C ? ? = = = = = = = = = = = = = T T A = T = G C = A = = = G C = = = = = C = = C = T = A = C G A T = = C = = = G T = = = = = T ? ? = = = = = = = = = = = = = A A G = G = A G = G = = = A T = = = = = G = = G = C = G = T A G C = = T = = = T C = = 0 P044 = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = C = = C = T = A = C G A T = = C = = = G T = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = G = = G = C = G = T A G C = = T = = = T C = = 0 P045 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P046 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = 0 P047 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P048 = = = C A A C = = = = = = = = = = = = T T A = T = G C = A = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G G T = = = = = = = = = = = = A A G = G = A G = G = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P049 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = G = = G = C = G = T = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = C = = C = T = A = C = = = = = C = = = = = = = 0 P050 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = = = = = = = = = = = = G = = = = = T = = = = = = = = = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = = = = = = = = = = = = A = = = = = C = = = = = = = = = = 0 P051 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = C = = = = = = = = = = G = = = A G = = = = = = = T C = ? = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = G = = = = = = = = = = A = = = G A = = = = = = = G T = ? 0 P052 = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = G = = G G C G G = T A G = = = T = = = T C = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = C = = C A T A A = C G A = = = C = = = G T = = 0 P053 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = (C) = = = = = = = = = = (G) = = = (A) (G) = = = = = (T) = (T) (C) = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = (G) = = = = = = = = = = (A) = = = (G) (A) = = = = = (C) = (G) (T) = = 0 P054 = = = C A A = = = = = = = = = = = T = T T A = T = G C = A = = = G = ? ? ? ? ? ? ? = = G = G = = = A G = = = = = = = T C = = = = = T G G = = = = = = = = = = = C = A A G = G = A G = G = = = A = ? ? ? ? ? ? ? = = A = A = = = G A = = = = = = = G T = = 0 P055 = = = = (A) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = (T) ? ? ? = = = = = = = = G = = = A G = = = = = = = T C = = = = = = (G) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = (C) ? ? ? = = = = = = = = A = = = G A = = = = = = = G T = = 0 P056 = = = C = A = = = = = = = = = = = = = T T A = T = G C = A = = = G = = (C) = = = = = = (G) = (C) (G) (G) = (T) (A) (G) = = = = = = = (T) (C) (C) = = = = T = G = = = = = = = = = = = = = A A G = G = A G = G = = = A = = (T) = = = = = = (C) = (T) (A) (A) = (C) (G) (A) = = = = = = = (G) (T) (G) = 0 P057 = (C) ? ? (G) = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = G = = = A G = = = = = = = T C = = = (G) ? ? (A) = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = A = = = G A = = = = = = = G T = = 0 P058 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P059 = = = C A A = = = = = = = = = C = = G T T A = T = G C = A = = = G = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = T G G = = = = = = = = = T = = A A A G = G = A G = G = = = A = = = = = = = = G = = = = = = = = = = = = = = = = = = = = 0 P060 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = C = = A A = C G A = = = C = = = G T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = G = = G G = T A G = = = T = = = T C = = 0 P061 = = = C A A = = = = = = = = D C = T = T T A = T = G C = A = = = G = = = T = = = = C = = = G = = = = ? = G = = = = = T C = = = = = T G G = = = = = = = = I T = C = A A G = G = A G = G = = = A = = = C = = = = G = = = A = = = = ? = A = = = = = G T = = 0 P062 = = = (C) = (A) = = = = = = = = = = = = = (T) (T) (A) = (T) = (G) (C) = (A) = = = (G) (C) = = = = = C = = C = T A A = C G A = = = C = = = G T = = = = = (T) = (G) = = = = = = = = = = = = = (A) (A) (G) = (G) = (A) (G) = (G) = = = (A) (T) = = = = = G = = G = C G G = T A G = = = T = = = T C = = 0 P063 = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P064 = = (G) = = = = = = = (C) = = (A) = = (C) = = = = = = = (G) = = = = = = = = = G = = = = = = = = = = A = = = G A = = = = = = = G T = = = = (A) = = = = = = = (T) = = (C) = = (T) = = = = = = = (A) = = = = = = = = = C = = = = = = = = = = G = = = A G = = = = = = = T C = = 0 P065 = = (G) = (G) = = = = = = (T) = = = = (C) = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = G = = = A G = = = = = = = T C = = = = (A) = (A) = = = = = = (C) = = = = (T) = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = A = = = G A = = = = = = = G T = = 0 P066 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = 0 P067 = = = C = A = = = = = = = = = = = = = T T A = T = G C = A = = = G C C = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = T = G = = = = = = = = = = = = = A A G = G = A G = G = = = A T G = = = = G = = = = = = = = = = = = = = = = = = = = = = 0 P068 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P069 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = C = T A A = C G A = = = C = = = G T = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = G = C G G = T A G = = = T = = = T C = (A) 0 P070 = = = C A A = = = ? = = = = = = = = = T T A = T = G C = A = = = G = ? ? ? = = = = = = = = G = = = A G = = = = = = = T C = = = = = T G G = = = ? = = = = = = = = = A A G = G = A G = G = = = A = ? ? ? = = = = = = = = A = = = G A = = = = = = = G T = = 0 P071 = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P072 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P073 = = = C A A = = = = = = = = = = = = = T T A = T = G C = = = = ? ? ? (C) = = = = (C) = = (C) = (T) = (A) = (C) = = = = = (C) = = = = = = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = = = = ? ? ? (G) = = = = (G) = = (G) = (C) = (G) = (T) = = = = = (T) = = = = = = = 0 P074 = = = C = A = = = = = = = = = = = T = T T A = T = G C = A = = ? G = = = = = = = G = = = = = = = = G A = = = = = = = G T = = = = = T = G = = = = = = = = = = = C = A A G = G = A G = G = = ? A = = = = = = = A = = = = = = = = A G = = = = = = = T C = = 0 P075 = = = C = A = = = = = = = = = = = T = T T A = T = G C = A = = (C) G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = G = = = = = = = = = = = C = A A G = G = A G = G = = (G) A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P076 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P077 = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P078 = = = C = A = = = = = = = = = = = = = T T A G T = G C = A = = = G C = = = = = C = = C = T A A = C G A = = = C = = = G T = = = = = T = G = = = = = = = = = = = = = A A G A G = A G = G = = = A T = = = = = G = = G = C G G = T A G = = = T = = = T C = = 0 P079 = = = (C) (A) (A) = = = = = = = = = = = = = (T) (T) (A) = (T) = (G) (C) = (A) = = = (G) = = = = = = G = = G = C G G = T A G = = = T = = = T C = = = = = (T) (G) (G) = = = = = = = = = = = = = (A) (A) (G) = (G) = (A) (G) = (G) = = = (A) = = = = = = C = = C = T A A = C G A = = = C = = = G T = = 0 P080 = = = C A A = = = = = = = = = = = T = T T A = T = G C = A = = = G = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = T G G = = = = = = = = = = = C = A A G = G = A G = G = = = A = = = = = = = = = = = = A = = = = = = = = = = = = = = = = 0 P081 = = = C A A ? = = = = = = = = = = = = T T A = T = G C = A = = = G = C = = = = = ? = = = = G = = = A G = = = = = = = T C = = = = = T G G ? = = = = = = = = = = = = A A G = G = A G = G = = = A = G = = = = = ? = = = = A = = = G A = = = = = = = G T = = 0 P082 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = = = = = (A) = = = = = = (G) = = = (A) (G) = = = = = = = (T) (C) = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = = = = = (G) = = = = = = (A) = = = (G) (A) = = = = = = = (G) (T) = = 0 P083 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = A = = = G A = = = = = = = G T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = G = = = A G = = = = = = = T C = = 0 P084 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = ? G = C = = = = = ? = = G = G = = = A G = = = = = = = T C = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = ? A = G = = = = = ? = = A = A = = = G A = = = = = = = G T = = 0 P085 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = 0 P086 = = = C A A = = = = = = = = = = = ? = ? T A = T = G C = A = = = G = = = = = = = = = = = = G = = = = = T = = = = = = = = = = = = = T G G = = = = = = = = = = = ? = ? A G = G = A G = G = = = A = = = = = = = = = = = = A = = = = = C = = = = = = = = = = 0 P087 = = = C A A = = = = = = = = = = = = = T T A = T = G C = A = = = G = = = (T) = = = ? = (C) = (T) = (A) = (C) (G) ? = (G) = = = = = = = = = = = = T G G = = = = = = = = = = = = = A A G = G = A G = G = = = A = = = (C) = = = ? = (G) = (C) = (G) = (T) (A) ? = (A) = = = = = = = = = 0 P088 = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? = = = = = = ? = = = = = = = = = A = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? = = = = = = ? = = = = = = = = = C = = = = 0 P089 = = = C = A ? = = = = = = ? ? = = T = T T A = T = G C = A = = ? G = = (C) = = = = (A) = = = = (G) = = = (A) (G) = = = = = = = (T) (C) = ? = = = T = G ? = = = = = = ? ? = = C = A A G = G = A G = G = = ? A = = (T) = = = = (G) = = = = (A) = = = (G) (A) = = = = = = = (G) (T) = ? 0 P090 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = 1.00 1.00 ? = = = = = ? = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 ? ? ? 1.00 = = = = = = 0.88 ? = ? = 0.88 0.88 0.88 = 0.88 0.88 0.88 = = = 0.88 = = = 0.88 0.88 ? ? = = = 1.00 1.00 ? = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = ? 1.00 = = = = = = = ? = = ? ? ? = = = = = = = = = = = = = = ? ? = 0.94 = 0.95 = 0.95 ? = = = = ? 1.00 ? ? = = 0.95 = 0.95 = 0.95 = 0.95 = = = = 0.92 = ? ? = = = = = = = = ? = ? = = 0.83 = = = 0.83 0.83 = = = = = = = 0.83 0.83 = ? = = = = = ? ? = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = 0.97 = = = = = = ? ? ? ? = = = ? ? ? 1.00 = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 ? = = = = = = = = ? = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = 1.00 ? = 1.00 ? ? ? ? ? ? = = = = = 1.00 = = = = = = ? = = = 1.00 = 1.00 = = = = = ? = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = ? 1.00 1.00 0.98 = = = = 0.98 ? = 0.98 = 0.98 = 0.98 = 0.98 = = = = = 0.98 = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = ? = = 1.00 = = = = = ? = = = = 1.00 = = = 1.00 1.00 = = = 0.72 = = = 1.00 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = 1.00 ? ? ? = = = = = 1.00 1.00 ? ? = = = = 0.95 = ? = 0.51 = = = = = = = = = ? ? = = = = = = = = = = = = = 0.95 ? ? ? = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = 1.00 ? 1.00 = = = = = = = = = = = ? = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = ? = = 0.98 = = = = = 0.98 = = = = = = = = = = = = = = = = 0.50 = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 ? 1.00 = = = = = = = = = = 1.00 = = = 1.00 1.00 = = 0.50 = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = ? = = = = = = = = = = = ? ? = = = = = = = = = ? = ? = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 0.92 = = = = = = = = = = 0.92 = = = 0.92 0.92 = = = = = = = 0.92 0.92 = = = = = 1.00 = 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = = = = 0.86 = = = 0.86 = 0.86 = = = = = 0.86 = = = = = = ? ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = 1.00 1.00 = ? = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.71 = 0.71 = = = = = = = = = = = = 0.71 ? = 0.71 = = 0.71 = = = = = = = = = = 0.98 = = = = = = = = = = = = = = = = = 0.98 = = = = = = = = = = 0.98 = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = 1.00 1.00 1.00 = = = = = = = = = = = = 0.99 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.99 = = = = = = = = = = 0.99 = 0.95 = 0.99 0.99 = = = = = = = 0.99 0.99 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 ? ? ? 0.50 = 1.00 ? = 1.00 = 1.00 = 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = = = 0.95 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 0.97 = = = = = = = = = = = = = = = = 1.00 = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = 0.73 = = = ? = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = ? = = = = = = = = = = = = 1.00 = = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.81 0.92 0.97 = = = = = = = = = = = = = = = = = = = = = 0.85 = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = = = = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = 0.54 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 0.97 = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.97 = = = = = = = = = = 0.97 = = = 0.97 0.97 = = = = = = = 0.97 0.97 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 ? ? 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.81 = = = = 0.81 = = 0.81 = 0.81 = 0.81 = 0.81 = = = = = 0.81 = = = = = = = = = ? = 1.00 = 0.94 = = = = = = = = = = = = = = = = = = = = = = = = ? = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = = 0.95 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.95 = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = 0.95 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = 0.91 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = 0.72 = 0.72 0.72 0.72 = 0.72 0.72 0.72 = = = = = = = 0.72 0.72 = = = = = 1.00 ? ? = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = 0.94 = = 0.94 = 0.94 = 0.94 = 0.94 0.94 0.94 0.94 = = 0.94 = = = 0.94 0.94 = = = = = = = = = = = = = = = = = = = 0.59 = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 0.50 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 0.94 = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = = = 0.98 = = = = = 0.98 = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.96 = = = = = = = = = = 0.96 = = = 0.96 0.96 = = = = = = = 0.96 0.96 = ? = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.89 = = = = = = = = = = 0.89 = = = 0.89 0.89 = = = = = 0.64 = 0.89 0.89 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = ? ? ? ? ? ? ? = = 0.97 = 0.97 = = = 0.97 0.97 = = = = = = = 0.97 0.97 = = = = = = 0.85 = 0.86 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.85 ? ? ? = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = 0.94 = 0.94 = = = = = = = = = = = = = 0.94 0.94 0.94 = 0.94 = 0.94 0.94 = 0.94 = = = 0.94 = = 0.84 = = = = = = 0.88 = 0.88 0.88 0.88 = 0.88 0.88 0.88 = = = = = = = 0.88 0.88 0.56 = = 0.51 ? ? 0.51 = = = = = = = = = = = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = 1.00 = = = 1.00 = = = = ? = 1.00 = = = = = 1.00 1.00 = = = = = 0.76 = 0.76 = = = = = = = = = = = = = 0.76 0.76 0.76 = 0.76 = 0.76 0.76 = 0.76 = = = 0.76 0.76 = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 = = = = = = = 0.52 = = 0.52 = = 0.56 = = = = = = = 0.56 = = = = = = = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = 0.51 = 0.51 = = = = = = 0.50 = = = = 0.51 = = = = = = = 0.51 = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 = = = = 0.91 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = 0.50 = = = 1.00 1.00 1.00 = = = ? = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = ? ? ? = = = = = = = = 0.95 = = = 0.95 0.95 = = = = = = = 0.95 0.95 = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = = = ? ? ? 0.73 = = = = 0.73 = = 0.73 = 0.73 = 0.73 = 0.73 = = = = = 0.73 = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = ? 1.00 = = = = = = = 1.00 = = = = = = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = 1.00 = 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = 0.55 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = 0.93 = = 0.93 = 0.93 0.93 0.93 = 0.93 0.93 0.93 = = = 0.93 = = = 0.93 0.93 = = = = = 0.82 0.82 0.82 = = = = = = = = = = = = = 0.82 0.82 0.82 = 0.82 = 0.82 0.82 = 0.82 = = = 0.82 = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 ? = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 0.97 = = = = = ? = = = = 0.97 = = = 0.97 0.97 = = = = = = = 0.97 0.97 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = 0.51 = = = = = = 0.55 = = = 0.55 0.55 = = = = = = = 0.55 0.55 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = ? 1.00 = 0.97 = = = = = ? = = 0.97 = 0.97 = = = 0.97 0.97 = = = = = = = 0.97 0.97 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = ? = ? 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = = = 0.99 = = = = = 0.99 = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = 0.59 = = = ? = 0.59 = 0.59 = 0.59 = 0.59 0.59 ? = 0.59 = = = = = = = = = = = = = 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? = = = = = = ? = = = = = = = = = 1.00 = = = = = = = 1.00 = 1.00 ? = = = = = = ? ? = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = ? 1.00 = = 0.71 = = = = 0.71 = = = = 0.71 = = = 0.71 0.71 = = = = = = = 0.71 0.71 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS