Site      Allele1   Total-pop Allele2   Total-pop 
000175    G         54        A         122       
000628    C         56        T         124       
000909    A         1         G         149       
000951    T         1         C         157       
001021    T         1         C         167       
001166    A         48        G         100       
001412    C         51        A         125       
001486    T         1         C         175       
001497    T         2         C         174       
001514    T         1         C         175       
001611    G         2         C         174       
002448    A         80        G         86        
002835    C         26        G         142       
003116    G         6         C         174       
003433    A         4         G         176       
004103    T         1         C         179       
004183    A         2         G         178       
005303    C         1         T         157       
005347    C         78        T         82        
005601    C         30        G         132       
005929    T         3         C         159       
006094    G         4         T         172       
006112    C         1         A         175       
006119    A         6         G         170       
006224    T         46        C         130       
006418    C         2         T         178       
006489    C         89        T         91        
006516    -         4         +         174       
006580    A         4         G         176       
006771    T         57        C         123       

Note:

Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

006516: gtatttg