Site      Allele1   Total-pop Allele2   Total-pop Total-hz  
000429    G         0.01      C         0.99      0.01      
000616    T         0.31      C         0.69      0.43      
000737    T         0.01      C         0.99      0.01      
001020    G         0.29      T         0.71      0.41      
001340    G         0.01      T         0.99      0.01      
001603    C         0.04      T         0.96      0.08      
001894    A         0.15      T         0.85      0.26      
002406    +         0.16      -         0.84      0.27      
002557    C         0.04      T         0.96      0.08      
003029    C         0.01      A         0.99      0.02      
003047    +         0.25      -         0.75      0.37      
003158    G         0.46      C         0.54      0.50      
003226    A         0.02      G         0.98      0.04      
003578    T         0.36      C         0.64      0.46      
003673    C         0.47      T         0.53      0.50      
003857    T         0.01      C         0.99      0.01      
004067    C         0.01      T         0.99      0.01      
004387    A         0.01      G         0.99      0.02      
004496    A         0.03      T         0.97      0.07      
004842    A         0.50      C         0.50      0.50      
005391    G         0.07      A         0.93      0.13      

Note:

Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

002406: A
003047: CAGC