Site      Allele1   Total-pop Allele2   Total-pop 
000429    G         1         C         179       
000616    T         56        C         124       
000737    T         1         C         179       
001020    G         52        T         126       
001340    G         1         T         145       
001603    C         6         T         146       
001894    A         24        T         134       
002406    +         26        -         138       
002557    C         7         T         161       
003029    C         1         A         117       
003047    +         44        -         134       
003158    G         82        C         98        
003226    A         3         G         147       
003578    T         64        C         114       
003673    C         84        T         96        
003857    T         1         C         179       
004067    C         1         T         169       
004387    A         2         G         176       
004496    A         6         T         170       
004842    A         88        C         88        
005391    G         12        A         162       

Note:

Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

002406: A
003047: CAGC