************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 cdk7y.phase.inp cdk7y.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST cdk7y.phase.out_freqs : haplotype frequency estimates cdk7y.phase.out_pairs : most likely haplotype pairs for each individual cdk7y.phase.out_recom : estimates of recombination parameters cdk7y.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 34 Positions of loci: 543 1332 1486 1737 1926 2438 19298 20377 20579 20623 20883 21336 21340 22424 23106 24351 24463 25069 25996 26659 27980 28007 28022 28301 28305 28470 28986 29254 29792 39113 39856 39963 40020 40191 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file cdk7y.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CGTCATCCCCTTACDACCCTTGCCTGGAITIGTG 2.000000 2 CGTCATCCCCTTACDACCCTTGCCTGGAITDATA 5.000000 3 CGTCATCCCCTTACDACCCTTGGCTGGAITIGTG 10.000000 4 CGTCATCCCCTTACDACCCTTGGCTGGAITDATG 2.000000 5 CGTCATCCCCTTACDACCCTTGGCTGGAITDATA 19.000000 6 CGTCATTTTCTCAGIGCTCTTACTCACAICIGTG 1.000000 7 CGTCATTTTCTCGGIGCTCTTACTCACAICIGTG 8.000000 8 CGTCATTTTCTCGGIGCTCTTAGTCACAICIGTG 40.000000 9 CGTCATTTTCTCGGIGCTCTTAGTCAGAICIGTG 1.000000 10 CGTCATTTTCTCGGIGCTCTTAGTTACAITIGTG 1.000000 11 TATCACCCCCTTACIGCCTTGGGCTGGADTIGTG 1.000000 12 TATCACCCCTTTACIGCCTTGGCCTGGADTIGTG 4.000000 13 TATCACCCCTTTACIGCCTTGGGCTGGADTIGTG 21.000000 14 TATCACCCCTTTACIGCCTTGGGCTGGADTDGTG 1.000000 15 TGCTACCCCCCTACIGTCCTTGCCCAGTITIGCG 1.000000 16 TGCTACTTTCTCGCIGCTCTTACTCACAICIGTG 1.000000 17 TGCTGCCCCCCTACIGTCCCTGCCCAGTITIGCG 50.000000 18 TGCTGCCCCCTTACIGTCCCTGCCCAGTITIGCG 5.000000 19 TGTCATCCCCTTACIGCCCTTGCCTGGAITDATG 1.000000 20 TGTCATCCCCTTACIGCCCTTGGCTAGAITDATG 1.000000 21 TGTCATCCCCTTACIGCCCTTGGCTGGAITIATG 1.000000 22 TGTCATCCCCTTACIGCCCTTGGCTGGAITDATG 2.000000 23 TGTCATCCCCTTACIGCCCTTGGCTGGAITDATA 1.000000 24 TGTCATCCCCTTACIGCCCTTGGCTGGAICDATG 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (12,17) P002: (8,18) P003: (8,15) P004: (14,23) P005: (5,8) P006: (8,17) P007: (13,13) P008: (3,3) P009: (7,17) P010: (6,17) P011: (2,20) P012: (17,17) P013: (1,17) P014: (8,8) P015: (2,17) P016: (17,18) P017: (8,22) P018: (4,13) P019: (5,13) P020: (3,17) P021: (8,21) P022: (7,17) P023: (5,5) P024: (3,17) P025: (5,5) P026: (8,8) P027: (8,13) P028: (7,17) P029: (2,17) P030: (7,18) P031: (7,17) P032: (16,17) P033: (2,17) P034: (17,17) P035: (3,3) P036: (8,8) P037: (8,8) P038: (8,24) P039: (8,8) P040: (17,17) P041: (8,8) P042: (4,8) P043: (8,13) P044: (17,17) P045: (17,18) P046: (5,8) P047: (5,10) P048: (8,8) P049: (5,5) P050: (12,17) P051: (8,13) P052: (17,17) P053: (8,8) P054: (8,8) P055: (5,8) P056: (5,8) P057: (13,13) P058: (5,17) P059: (2,17) P060: (17,17) P061: (8,13) P062: (12,17) P063: (5,5) P064: (17,19) P065: (13,13) P066: (3,8) P067: (7,17) P068: (3,13) P069: (3,13) P070: (1,17) P071: (7,18) P072: (7,17) P073: (17,17) P074: (8,8) P075: (17,17) P076: (3,8) P077: (12,17) P078: (17,17) P079: (5,5) P080: (8,11) P081: (8,13) P082: (5,13) P083: (13,17) P084: (13,17) P085: (9,13) P086: (17,17) P087: (5,8) P088: (13,13) P089: (17,22) P090: (17,17) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 T (A) (T) (C) A C C C C T T T A C I G C C T T G G C C T G G A D T I G T G T (G) (C) (T) [G] C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P002 (C) G [T] (C) (A) (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) G C (T) (G) (C) C C C C T T A C I G T C C C T G C C C A G T I T I G C G 0 P003 (C) G (T) (C) A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) G (C) (T) A (C) C C C C C T A C I G T C C T T G C C C A G T I T I G C G 0 P004 T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T D G T G T G T C A T C C C C T T A C I G C C C T T G G C T G G A I T D A T A 0 P005 C G T C A T C C C C T T A C D A C C C T T G [G] C T G G A I T D A T A C G T C A T T T T C T C G G I G C T C T T A [G] T C A C A I C I G T G 0 P006 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P007 T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P008 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G 0 P009 (C) G (T) (C) A (T) T T T C T C [G] G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) [G] (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P010 (C) G (T) (C) (A) (T) T T T C T C A G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P011 C G T C A T C C C C T T A C D A C C C T T G (C) C T (G) G A I T D A T A T G T C A T C C C C T T A C I G C C C T T G (G) C T (A) G A I T D A T G 0 P012 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P013 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P014 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P015 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P016 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C T T A C I G T C C C T G C C C A G T I T I G C G 0 P017 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G T G T C A T C C C C T T A C I G C C C T T G G C T [G] G A I T D A T G 0 P018 (C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P019 (C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T A (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P020 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P021 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G T G T C A T C C C C T T A C I G C C C T T G G C T G G A I T I A T G 0 P022 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P023 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A 0 P024 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P025 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A 0 P026 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P027 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P028 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P029 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P030 (C) G (T) (C) (A) (T) T T T C T C [G] G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C T T A C I G T C C C T G C C C A G T I T I G C G 0 P031 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P032 T G C T (A) C T T T C T C G C I G C T C T T A C T C A C A I C I G T G T G C T (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P033 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P034 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P035 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G 0 P036 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P037 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P038 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G T G T C A T C C C C T T A C I G C C C T T G G C T G G A I C D A T G 0 P039 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P040 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P041 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P042 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P043 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P044 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P045 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C T T A C I G T C C C T G C C C A G T I T I G C G 0 P046 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P047 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T (D) (A) T (A) C G T C A T T T T C T C G G I G C T C T T A G T T A C A I T (I) (G) T (G) 0 P048 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P049 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A 0 P050 T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G C C T G G A D T I G T G T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P051 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P052 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P053 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P054 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P055 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P056 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P057 T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P058 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T A (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P059 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P060 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P061 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P062 T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G C C T G G A D T I G T G T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P063 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A 0 P064 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G T C A T C C C C T T A C I G C C C T T G C C T G G A I T D A T G 0 P065 T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P066 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P067 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P068 (C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P069 (C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P070 (C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P071 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C T T A C I G T C C C T G C C C A G T I T I G C G 0 P072 (C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G (T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P073 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P074 C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P075 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P076 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P077 T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G C C T G G A D T I G T G T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P078 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P079 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A 0 P080 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) (A) T C A (C) C C C C T T A C I G C C T T G G G C T G G A D T I G T G 0 P081 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P082 (C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T A (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P083 T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G G C T G G A D T I G T G T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P084 T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G G C T G G A D T I G T G T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P085 (C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A G A I C I G T G (T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P086 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G 0 P087 C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G 0 P088 T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G 0 P089 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G T C A T C C C C T T A C I G C C C T T G G C T G G A I T D A T G 0 P090 T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 ? (A) (T) (C) ? = = = = T T = = = = = C = T T G ? = = T G ? ? ? = ? = T = ? (G) (C) (T) ? = = = = C C = = = = = T = C C T ? = = C A ? ? ? = ? = C = 0 P002 (C) = ? (C) (A) (T) T T T = = C G ? ? = C T = T = A G T = = C A = C = = T = (T) = ? (T) (G) (C) C C C = = T A ? ? = T C = C = G C C = = G T = T = = C = 0 P003 (C) ? (T) (C) = (T) T T T = ? C G ? = = C T = = = A G ? ? = C A = C ? = T = (T) ? (C) (T) = (C) C C C = ? T A ? = = T C = = = G C ? ? = G T = T ? = C = 0 P004 = A = = = C = = = T = = = = = = = = T = G = = ? ? = = = D = = ? = G = G = = = T = = = C = = = = = = = = C = T = = ? ? = = = I = = ? = A 0 P005 ? = = = = = C C C = = T A C ? A = ? = = ? ? ? C T G G = = T D A = A ? = = = = = T T T = = C G G ? G = ? = = ? ? ? T C A C = = C I G = G 0 P006 (C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A G ? ? = C A = C = = T = (T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G C ? ? = G T = T = = C = 0 P007 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = 0 P008 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = ? = = 0 P009 (C) = (T) (C) ? (T) T T T = T ? ? G = = C T = T = A = T = = C A = C = = T = (T) = (C) (T) ? (C) C C C = C ? ? C = = T C = C = G = C = = G T = T = = C = 0 P010 (C) = (T) (C) (A) (T) T T T = T C = G = = C T = T = A = T = = C A = C = = T = (T) = (C) (T) (G) (C) C C C = C T = C = = T C = C = G = C = = G T = T = = C = 0 P011 C = = = = = = = = = = = = ? D A = = = = = = (C) = = (G) = = = = = = = ? T = = = = = = = = = = = = ? I G = = = = = = (G) = = (A) = = = = = = = ? 0 P012 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P013 (C) = (T) (C) (A) (T) = = = = T = = = D A C ? = T = = = = T G = A = = = = T = (T) = (C) (T) (G) (C) = = = = C = = = I G T ? = C = = = = C A = T = = = = C = 0 P014 = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = 0 P015 (C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = = = T G = A = = D A T A (T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = = = C A = T = = I G C G 0 P016 = = = = = = = = = = C = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = ? = = = = = = = = = = = = = = = = = = 0 P017 C = = = = ? T T T = = C G G = = ? ? = = = A = ? ? ? ? ? ? C I G = = T = = = = ? C C C = = T A C = = ? ? = = = G = ? ? ? ? ? ? T D A = = 0 P018 (C) (G) = = = (T) = = = C = = = = ? A = = C = T = = ? ? ? = = I = D A = = (T) (A) = = = (C) = = = T = = = = ? G = = T = G = = ? ? ? = = D = I G = = 0 P019 (C) (G) = = = (T) = = = C = = = = D A = = C = T = = = = = = = I = D A = A (T) (A) = = = (C) = = = T = = = = I G = = T = G = = = = = = = D = I G = G 0 P020 (C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = G = T G = A = = ? = T = (T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = C = C A = T = = ? = C = 0 P021 C = = = = = T T T = = C G G = = = T = = = A = ? ? A C = = C = G = = T = = = = = C C C = = T A C = = = C = = = G = ? ? G G = = T = A = = 0 P022 (C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A = T = = C A = ? = = T = (T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G = C = = G T = ? = = C = 0 P023 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0 P024 (C) = (T) (C) (A) (T) = = = = T = = = ? A C ? = T = = G = T G = A = = = ? ? = (T) = (C) (T) (G) (C) = = = = C = = = ? G T ? = C = = C = C A = T = = = ? ? = 0 P025 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = 0 P026 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P027 (C) (G) = = = (T) T T T C = ? ? G = = = T C = T A = T C A C = I C = = = = (T) (A) = = = (C) C C C T = ? ? C = = = C T = G G = C T G G = D T = = = = 0 P028 (C) = (T) (C) (A) (T) T T T = T C G G = = C T = T = A = T = = C A = ? = ? ? = (T) = (C) (T) (G) (C) C C C = C T A C = = T C = C = G = C = = G T = ? = ? ? = 0 P029 (C) = (T) (C) (A) (T) = = = = T = = = ? A C = = T = = = = T G ? ? = = D A T A (T) = (C) (T) (G) (C) = = = = C = = = ? G T = = C = = = = C A ? ? = = I G C G 0 P030 (C) = (T) (C) (A) (T) T T T = = ? ? G = = C ? = T = A = T = = C A = C = = T = (T) = (C) (T) (G) (C) C C C = = ? ? C = = T ? = C = G = C = = G T = T = = C = 0 P031 (C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A = T = = C A = C = = T = (T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G = C = = G T = T = = C = 0 P032 = = = = (A) = T T T = T C G = = = C ? = T = A = T = = C A = ? = ? ? = = = = = (G) = C C C = C T A = = = T ? = C = G = C = = G T = ? = ? ? = 0 P033 (C) = (T) (C) (A) (T) = = = = T = = = D A C ? = T = = = = T G = A = = D A T A (T) = (C) (T) (G) (C) = = = = C = = = I G T ? = C = = = = C A = T = = I G C G 0 P034 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P035 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P036 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P037 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = 0 P038 C = = = = = T T T = = C G G = = = T = = = A = T C A C = = = I G = = T = = = = = C C C = = T A C = = = C = = = G = C T G G = = = D A = = 0 P039 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P040 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ? 0 P041 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P042 = = = = = = C C C = = T A C D A = C = = = G = C T G G = = T D A = = = = = = = = T T T = = C G G I G = T = = = A = T C A C = = C I G = = 0 P043 (C) (G) = = = (T) T T T C = ? ? G = = = T C = T A = T C A C = I C = = = = (T) (A) = = = (C) C C C T = ? ? C = = = C T = G G = C T G G = D T = = = = 0 P044 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P045 = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = 0 P046 = = = = = = C C C = = T A C D A = C = = = G = C T G G = = ? D A = A = = = = = = T T T = = C G G I G = T = = = A = T C A C = = ? I G = G 0 P047 = = = = = = C C C = = T A C D A = ? = = = G = C = G G = = = (D) (A) = (A) = = = = = = T T T = = C G G I G = ? = = = A = T = A C = = = (I) (G) = (G) 0 P048 = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = = 0 P049 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P050 = (A) (T) (C) (A) = = = = T T = = = = = C = ? T G = = = T G = A D = = = T = = (G) (C) (T) (G) = = = = C C = = = = = T = ? C T = = = C A = T I = = = C = 0 P051 (C) (G) = = = (T) T T T C = C G G = = = ? C = T A = T C A C = I C = = = = (T) (A) = = = (C) C C C T = T A C = = = ? T = G G = C T G G = D T = = = = 0 P052 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0 P053 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P054 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0 P055 = = = = = = C C C = = T A C D A = C = = = G = C T G G = = T D A = A = = = = = = T T T = = C G G I G = T = = = A = T C A C = = C I G = G 0 P056 = = = = = = C C C = = T A C D A = C = = = G = C T G G = = T D ? ? A = = = = = = T T T = = C G G I G = T = = = A = T C A C = = C I ? ? G 0 P057 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P058 (C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = G = T G = A = = D A T A (T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = C = C A = T = = I G C G 0 P059 (C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = = = T G = A = = D A T A (T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = = = C A = T = = I G C G 0 P060 = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? = 0 P061 (C) (G) = = = (T) T T T C = C G G = = = T C = T A = T C A C = I C = = = = (T) (A) = = = (C) C C C T = T A C = = = C T = G G = C T G G = D T = = = = 0 P062 = (A) (T) (C) (A) = = = = T T = = = = = C = T T G = = = T G = A D = = = T = = (G) (C) (T) (G) = = = = C C = = = = = T = C C T = = = C A = T I = = = C = 0 P063 = = = = = = = = = = = = ? = = = = ? = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = ? = = = = = ? ? = = = = = = = = = 0 P064 = = C T G C = = = = C = = = = = T ? = C = = = ? ? A = T = = I ? C = = = T C A T = = = = T = = = = = C ? = T = = = ? ? G = A = = D ? T = 0 P065 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P066 = = = = = = C C C = = T A C D A = C = = = G = C T G G = = T = = = = = = = = = = T T T = = C G G I G = T = = = A = T C A C = = C = = = = 0 P067 (C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A = T = = C A = C = = T = (T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G = C = = G T = T = = C = 0 P068 (C) (G) = = = (T) = = = C = = = = D A = = C = T = = = = = = = I = = ? ? = (T) (A) = = = (C) = = = T = = = = I G = = T = G = = = = = = = D = = ? ? = 0 P069 (C) (G) = = = (T) = = = C = = = = D A = = C = T = = = = = = = I = = = = = (T) (A) = = = (C) = = = T = = = = I G = = T = G = = = = = = = D = = = = = 0 P070 (C) = (T) (C) (A) (T) = = = = T = = = D A C ? = T = = = = T G = A = = = = T = (T) = (C) (T) (G) (C) = = = = C = = = I G T ? = C = = = = C A = T = = = = C = 0 P071 (C) = (T) (C) (A) (T) T T T = = C G G = = C T = T = A = T = = C A = C = = T = (T) = (C) (T) (G) (C) C C C = = T A C = = T C = C = G = C = = G T = T = = C = 0 P072 (C) = (T) (C) (A) (T) T T T = T C G G = = C T = T = A = T = = C A = C = ? ? = (T) = (C) (T) (G) (C) C C C = C T A C = = T C = C = G = C = = G T = T = ? ? = 0 P073 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P074 = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = 0 P075 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P076 = = = = = = C C C = = T A C D A = ? = = = G = C T G G = = T = = = = = = = = = = T T T = = C G G I G = ? = = = A = T C A C = = C = = = = 0 P077 = (A) (T) (C) (A) = = = = T T = = = = = C = T T G = = = T G = A D = = = T = = (G) (C) (T) (G) = = = = C C = = = = = T = C C T = = = C A = T I = = = C = 0 P078 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = 0 P079 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P080 (C) (G) = = = (T) T T T = = C G G = = = ? C = T A = T C A C = ? C = ? ? = (T) (A) = = = (C) C C C = = T A C = = = ? T = G G = C T G G = ? T = ? ? = 0 P081 (C) (G) = = = (T) T T T C = C G G = = = T C = T A = T C A C = I C = = = = (T) (A) = = = (C) C C C T = T A C = = = C T = G G = C T G G = D T = = = = 0 P082 (C) (G) = = = (T) = = = C ? = = = D A = = C = T = = = = = = = I = D A = A (T) (A) = = = (C) = = = T ? = = = I G = = T = G = = = = = = = D = I G = G 0 P083 = (A) (T) (C) (A) = = = = T T = = = = = C = T T G = G = T G = A D = = = T = = (G) (C) (T) (G) = = = = C C = = = = = T = C C T = C = C A = T I = = = C = 0 P084 = (A) (T) (C) (A) = = = = T T = = = = = C ? T T G = G = T G = A D = = = T = = (G) (C) (T) (G) = = = = C C = = = = = T ? C C T = C = C A = T I = = = C = 0 P085 (C) (G) = = = (T) T T T C = ? ? G = = = T C = T A = T C A = = I C = = = = (T) (A) = = = (C) C C C T = ? ? C = = = C T = G G = C T G = = D T = = = = 0 P086 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0 P087 = = = = = = C C C = = T A C D A = C = = = G = ? ? G G = = T D A = A = = = = = = T T T = = C G G I G = T = = = A = ? ? A C = = C I G = G 0 P088 = = = = = = = = = = = = = = = = = ? = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? ? = = = = = = = = 0 P089 = = C T G C = = = = C = = = = = T ? = C = = C = C A = T = = I G C = = = T C A T = = = = T = = = = = C ? = T = = G = T G = A = = D A T = 0 P090 = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS ? 0.84 0.84 0.84 ? = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 ? = = 1.00 1.00 ? ? ? = ? = 1.00 = 0.78 = ? 0.78 0.78 0.78 1.00 1.00 1.00 = = 1.00 1.00 ? ? = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 0.72 ? 0.72 0.72 = 0.73 1.00 1.00 1.00 = ? 1.00 1.00 ? = = 1.00 1.00 = = = 1.00 1.00 ? ? = 1.00 1.00 = 1.00 ? = 1.00 = = 0.95 = = = 0.95 = = = 1.00 = = = = = = = = 1.00 = 1.00 = = ? ? = = = 1.00 = = ? = 1.00 ? = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 ? 1.00 = ? = = ? ? ? 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 0.80 = 0.80 0.80 0.80 0.80 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 1.00 ? ? = 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = ? = = 0.72 = 0.73 0.73 ? 0.73 1.00 1.00 1.00 = 1.00 ? ? 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 0.73 = 0.73 0.73 0.73 0.73 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 0.93 = = = = = = = = = = = = ? 0.99 0.99 = = = = = = 0.62 = = 0.73 = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.71 = 0.71 0.71 0.71 0.71 = = = = 1.00 = = = 1.00 1.00 1.00 ? = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = 0.74 = 0.74 0.74 0.74 0.74 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = = = = = = = = = 1.00 = = = = ? = = = = = = = = = = = = = = = = = = 0.90 = = = = ? 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = ? ? = = = 1.00 = ? ? ? ? ? ? 1.00 1.00 1.00 = = 0.86 0.86 = = = 0.86 = = = 1.00 = = = = ? 1.00 = = 1.00 = 1.00 = = ? ? ? = = 1.00 = 0.91 0.91 = = 0.85 0.85 = = = 0.85 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = 1.00 1.00 = 1.00 0.79 = 0.79 0.79 0.79 0.79 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = ? = 1.00 = 0.91 = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = ? ? 1.00 1.00 = = 1.00 = 1.00 = = 0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = ? = = 1.00 = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0.79 = 0.79 0.79 0.79 0.79 = = = = 1.00 = = = ? 1.00 1.00 ? = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = 0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = ? = ? ? = 0.75 = 0.75 0.75 0.75 0.75 = = = = 1.00 = = = ? 1.00 1.00 = = 1.00 = = = = 1.00 1.00 ? ? = = 1.00 1.00 1.00 1.00 0.70 = 0.70 0.70 0.70 0.70 1.00 1.00 1.00 = = ? ? 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = = = = = 0.63 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = ? = ? ? = 0.74 = 0.74 0.74 0.74 0.74 = = = = 1.00 = = = 1.00 1.00 1.00 ? = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = 0.91 = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = ? 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = ? = = = 1.00 = 1.00 = 1.00 1.00 = = = 0.86 0.86 = 0.86 = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.84 0.84 0.84 0.84 = = = = 1.00 1.00 = = = = = 1.00 = ? 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 = 0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 ? ? 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.80 = 0.80 0.80 0.80 0.80 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 0.74 = 0.75 0.75 0.75 0.75 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? = 0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = 0.84 0.84 0.84 0.84 = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = ? = = = = ? = = = = = ? ? = = = = = = = = = = = 0.93 0.93 0.93 0.93 = = = = 1.00 = = = = = 1.00 ? = 1.00 = = = ? ? 1.00 = 1.00 = = 1.00 ? 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = 0.73 = 0.73 0.73 0.73 0.73 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 0.85 0.85 = = = 0.85 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = = ? ? = 0.85 0.85 = = = 0.85 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = = = = = 0.70 = 0.70 0.70 0.70 0.70 = = = = 1.00 = = = 1.00 1.00 1.00 ? = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 = 0.71 = 0.71 0.71 0.71 0.71 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = ? = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = 0.84 0.84 0.84 0.84 = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.77 0.77 = = = 0.77 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? 1.00 = ? ? = 0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = 0.86 0.86 = = = 0.86 = = = 1.00 ? = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = 1.00 1.00 = 1.00 = 0.87 0.87 0.87 0.87 = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 = = 0.87 0.87 0.87 0.87 = = = = 1.00 1.00 = = = = = 1.00 ? 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 = 0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = ? ? 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = ? = = = = = ? ? ? = = = = = = = = = = 0.92 0.92 0.92 0.92 = = = = 1.00 = = = = = 1.00 ? = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = END PHASEPROBS