*************************************************************
**** ****
**** Output from PHASE v2.0 ****
**** Code by M Stephens, with contributions from N Li ****
**** ****
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BEGIN COMMAND_LINE
/usr/local/genome/lib/phase/PHASE2 -d1 cdk7y.phase.inp cdk7y.phase.out
END COMMAND_LINE
BEGIN OUTFILE_LIST
cdk7y.phase.out_freqs : haplotype frequency estimates
cdk7y.phase.out_pairs : most likely haplotype pairs for each individual
cdk7y.phase.out_recom : estimates of recombination parameters
cdk7y.phase.out_monitor : file for monitoring convergence
END OUTFILE_LIST
BEGIN INPUT_SUMMARY
Number of Individuals: 90
Number of Loci: 34
Positions of loci: 543 1332 1486 1737 1926 2438 19298 20377 20579 20623 20883 21336 21340 22424 23106 24351 24463 25069 25996 26659 27980 28007 28022 28301 28305 28470 28986 29254 29792 39113 39856 39963 40020 40191
END INPUT_SUMMARY
List of haplotypes found in best reconstruction, with counts.
(See file cdk7y.phase.out_freqs for haplotype population frequency estimates)
BEGIN LIST_SUMMARY
1 CGTCATCCCCTTACDACCCTTGCCTGGAITIGTG 2.000000
2 CGTCATCCCCTTACDACCCTTGCCTGGAITDATA 5.000000
3 CGTCATCCCCTTACDACCCTTGGCTGGAITIGTG 10.000000
4 CGTCATCCCCTTACDACCCTTGGCTGGAITDATG 2.000000
5 CGTCATCCCCTTACDACCCTTGGCTGGAITDATA 19.000000
6 CGTCATTTTCTCAGIGCTCTTACTCACAICIGTG 1.000000
7 CGTCATTTTCTCGGIGCTCTTACTCACAICIGTG 8.000000
8 CGTCATTTTCTCGGIGCTCTTAGTCACAICIGTG 40.000000
9 CGTCATTTTCTCGGIGCTCTTAGTCAGAICIGTG 1.000000
10 CGTCATTTTCTCGGIGCTCTTAGTTACAITIGTG 1.000000
11 TATCACCCCCTTACIGCCTTGGGCTGGADTIGTG 1.000000
12 TATCACCCCTTTACIGCCTTGGCCTGGADTIGTG 4.000000
13 TATCACCCCTTTACIGCCTTGGGCTGGADTIGTG 21.000000
14 TATCACCCCTTTACIGCCTTGGGCTGGADTDGTG 1.000000
15 TGCTACCCCCCTACIGTCCTTGCCCAGTITIGCG 1.000000
16 TGCTACTTTCTCGCIGCTCTTACTCACAICIGTG 1.000000
17 TGCTGCCCCCCTACIGTCCCTGCCCAGTITIGCG 50.000000
18 TGCTGCCCCCTTACIGTCCCTGCCCAGTITIGCG 5.000000
19 TGTCATCCCCTTACIGCCCTTGCCTGGAITDATG 1.000000
20 TGTCATCCCCTTACIGCCCTTGGCTAGAITDATG 1.000000
21 TGTCATCCCCTTACIGCCCTTGGCTGGAITIATG 1.000000
22 TGTCATCCCCTTACIGCCCTTGGCTGGAITDATG 2.000000
23 TGTCATCCCCTTACIGCCCTTGGCTGGAITDATA 1.000000
24 TGTCATCCCCTTACIGCCCTTGGCTGGAICDATG 1.000000
END LIST_SUMMARY
Summary of best reconstruction
(numbers refer to the list of haplotypes given above)
BEGIN BESTPAIRS_SUMMARY
P001: (12,17)
P002: (8,18)
P003: (8,15)
P004: (14,23)
P005: (5,8)
P006: (8,17)
P007: (13,13)
P008: (3,3)
P009: (7,17)
P010: (6,17)
P011: (2,20)
P012: (17,17)
P013: (1,17)
P014: (8,8)
P015: (2,17)
P016: (17,18)
P017: (8,22)
P018: (4,13)
P019: (5,13)
P020: (3,17)
P021: (8,21)
P022: (7,17)
P023: (5,5)
P024: (3,17)
P025: (5,5)
P026: (8,8)
P027: (8,13)
P028: (7,17)
P029: (2,17)
P030: (7,18)
P031: (7,17)
P032: (16,17)
P033: (2,17)
P034: (17,17)
P035: (3,3)
P036: (8,8)
P037: (8,8)
P038: (8,24)
P039: (8,8)
P040: (17,17)
P041: (8,8)
P042: (4,8)
P043: (8,13)
P044: (17,17)
P045: (17,18)
P046: (5,8)
P047: (5,10)
P048: (8,8)
P049: (5,5)
P050: (12,17)
P051: (8,13)
P052: (17,17)
P053: (8,8)
P054: (8,8)
P055: (5,8)
P056: (5,8)
P057: (13,13)
P058: (5,17)
P059: (2,17)
P060: (17,17)
P061: (8,13)
P062: (12,17)
P063: (5,5)
P064: (17,19)
P065: (13,13)
P066: (3,8)
P067: (7,17)
P068: (3,13)
P069: (3,13)
P070: (1,17)
P071: (7,18)
P072: (7,17)
P073: (17,17)
P074: (8,8)
P075: (17,17)
P076: (3,8)
P077: (12,17)
P078: (17,17)
P079: (5,5)
P080: (8,11)
P081: (8,13)
P082: (5,13)
P083: (13,17)
P084: (13,17)
P085: (9,13)
P086: (17,17)
P087: (5,8)
P088: (13,13)
P089: (17,22)
P090: (17,17)
END BESTPAIRS_SUMMARY
Haplotype estimates for each individual, with uncertain phases enclosed in ()
and uncertain genotypes enclosed in []:
BEGIN BESTPAIRS1
0 P001
T (A) (T) (C) A C C C C T T T A C I G C C T T G G C C T G G A D T I G T G
T (G) (C) (T) [G] C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P002
(C) G [T] (C) (A) (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) G C (T) (G) (C) C C C C T T A C I G T C C C T G C C C A G T I T I G C G
0 P003
(C) G (T) (C) A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) G (C) (T) A (C) C C C C C T A C I G T C C T T G C C C A G T I T I G C G
0 P004
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T D G T G
T G T C A T C C C C T T A C I G C C C T T G G C T G G A I T D A T A
0 P005
C G T C A T C C C C T T A C D A C C C T T G [G] C T G G A I T D A T A
C G T C A T T T T C T C G G I G C T C T T A [G] T C A C A I C I G T G
0 P006
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P007
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P008
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G
0 P009
(C) G (T) (C) A (T) T T T C T C [G] G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) [G] (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P010
(C) G (T) (C) (A) (T) T T T C T C A G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P011
C G T C A T C C C C T T A C D A C C C T T G (C) C T (G) G A I T D A T A
T G T C A T C C C C T T A C I G C C C T T G (G) C T (A) G A I T D A T G
0 P012
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P013
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P014
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P015
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P016
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C T T A C I G T C C C T G C C C A G T I T I G C G
0 P017
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
T G T C A T C C C C T T A C I G C C C T T G G C T [G] G A I T D A T G
0 P018
(C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P019
(C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T A
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P020
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P021
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
T G T C A T C C C C T T A C I G C C C T T G G C T G G A I T I A T G
0 P022
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P023
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
0 P024
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P025
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
0 P026
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P027
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P028
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P029
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P030
(C) G (T) (C) (A) (T) T T T C T C [G] G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C T T A C I G T C C C T G C C C A G T I T I G C G
0 P031
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P032
T G C T (A) C T T T C T C G C I G C T C T T A C T C A C A I C I G T G
T G C T (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P033
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P034
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P035
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G
0 P036
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P037
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P038
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
T G T C A T C C C C T T A C I G C C C T T G G C T G G A I C D A T G
0 P039
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P040
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P041
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P042
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P043
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P044
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P045
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C T T A C I G T C C C T G C C C A G T I T I G C G
0 P046
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P047
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T (D) (A) T (A)
C G T C A T T T T C T C G G I G C T C T T A G T T A C A I T (I) (G) T (G)
0 P048
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P049
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
0 P050
T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G C C T G G A D T I G T G
T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P051
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P052
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P053
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P054
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P055
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P056
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P057
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P058
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T A
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P059
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T D A T A
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P060
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P061
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P062
T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G C C T G G A D T I G T G
T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P063
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
0 P064
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G T C A T C C C C T T A C I G C C C T T G C C T G G A I T D A T G
0 P065
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P066
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P067
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P068
(C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P069
(C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P070
(C) G (T) (C) (A) (T) C C C C T T A C D A C C C T T G C C T G G A I T I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P071
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C T T A C I G T C C C T G C C C A G T I T I G C G
0 P072
(C) G (T) (C) (A) (T) T T T C T C G G I G C T C T T A C T C A C A I C I G T G
(T) G (C) (T) (G) (C) C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P073
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P074
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P075
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P076
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T I G T G
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P077
T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G C C T G G A D T I G T G
T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P078
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P079
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
0 P080
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) (A) T C A (C) C C C C T T A C I G C C T T G G G C T G G A D T I G T G
0 P081
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A C A I C I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P082
(C) (G) T C A (T) C C C C T T A C D A C C C T T G G C T G G A I T D A T A
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P083
T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P084
T (A) (T) (C) (A) C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
T (G) (C) (T) (G) C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P085
(C) (G) T C A (T) T T T C T C G G I G C T C T T A G T C A G A I C I G T G
(T) (A) T C A (C) C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P086
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
0 P087
C G T C A T C C C C T T A C D A C C C T T G G C T G G A I T D A T A
C G T C A T T T T C T C G G I G C T C T T A G T C A C A I C I G T G
0 P088
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
T A T C A C C C C T T T A C I G C C T T G G G C T G G A D T I G T G
0 P089
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G T C A T C C C C T T A C I G C C C T T G G C T G G A I T D A T G
0 P090
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
T G C T G C C C C C C T A C I G T C C C T G C C C A G T I T I G C G
END BESTPAIRS1
Haplotype estimates for each individual, with uncertain phases enclosed in ()
and uncertain genotypes enclosed in []
with phase known positions indicated by =
BEGIN BESTPAIRS2
0 P001
? (A) (T) (C) ? = = = = T T = = = = = C = T T G ? = = T G ? ? ? = ? = T =
? (G) (C) (T) ? = = = = C C = = = = = T = C C T ? = = C A ? ? ? = ? = C =
0 P002
(C) = ? (C) (A) (T) T T T = = C G ? ? = C T = T = A G T = = C A = C = = T =
(T) = ? (T) (G) (C) C C C = = T A ? ? = T C = C = G C C = = G T = T = = C =
0 P003
(C) ? (T) (C) = (T) T T T = ? C G ? = = C T = = = A G ? ? = C A = C ? = T =
(T) ? (C) (T) = (C) C C C = ? T A ? = = T C = = = G C ? ? = G T = T ? = C =
0 P004
= A = = = C = = = T = = = = = = = = T = G = = ? ? = = = D = = ? = G
= G = = = T = = = C = = = = = = = = C = T = = ? ? = = = I = = ? = A
0 P005
? = = = = = C C C = = T A C ? A = ? = = ? ? ? C T G G = = T D A = A
? = = = = = T T T = = C G G ? G = ? = = ? ? ? T C A C = = C I G = G
0 P006
(C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A G ? ? = C A = C = = T =
(T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G C ? ? = G T = T = = C =
0 P007
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = =
0 P008
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = ? = =
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = ? = =
0 P009
(C) = (T) (C) ? (T) T T T = T ? ? G = = C T = T = A = T = = C A = C = = T =
(T) = (C) (T) ? (C) C C C = C ? ? C = = T C = C = G = C = = G T = T = = C =
0 P010
(C) = (T) (C) (A) (T) T T T = T C = G = = C T = T = A = T = = C A = C = = T =
(T) = (C) (T) (G) (C) C C C = C T = C = = T C = C = G = C = = G T = T = = C =
0 P011
C = = = = = = = = = = = = ? D A = = = = = = (C) = = (G) = = = = = = = ?
T = = = = = = = = = = = = ? I G = = = = = = (G) = = (A) = = = = = = = ?
0 P012
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P013
(C) = (T) (C) (A) (T) = = = = T = = = D A C ? = T = = = = T G = A = = = = T =
(T) = (C) (T) (G) (C) = = = = C = = = I G T ? = C = = = = C A = T = = = = C =
0 P014
= = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = =
0 P015
(C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = = = T G = A = = D A T A
(T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = = = C A = T = = I G C G
0 P016
= = = = = = = = = = C = = = = ? = = = = = = = = = = = = = = = = = =
= = = = = = = = = = T = = = = ? = = = = = = = = = = = = = = = = = =
0 P017
C = = = = ? T T T = = C G G = = ? ? = = = A = ? ? ? ? ? ? C I G = =
T = = = = ? C C C = = T A C = = ? ? = = = G = ? ? ? ? ? ? T D A = =
0 P018
(C) (G) = = = (T) = = = C = = = = ? A = = C = T = = ? ? ? = = I = D A = =
(T) (A) = = = (C) = = = T = = = = ? G = = T = G = = ? ? ? = = D = I G = =
0 P019
(C) (G) = = = (T) = = = C = = = = D A = = C = T = = = = = = = I = D A = A
(T) (A) = = = (C) = = = T = = = = I G = = T = G = = = = = = = D = I G = G
0 P020
(C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = G = T G = A = = ? = T =
(T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = C = C A = T = = ? = C =
0 P021
C = = = = = T T T = = C G G = = = T = = = A = ? ? A C = = C = G = =
T = = = = = C C C = = T A C = = = C = = = G = ? ? G G = = T = A = =
0 P022
(C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A = T = = C A = ? = = T =
(T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G = C = = G T = ? = = C =
0 P023
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
0 P024
(C) = (T) (C) (A) (T) = = = = T = = = ? A C ? = T = = G = T G = A = = = ? ? =
(T) = (C) (T) (G) (C) = = = = C = = = ? G T ? = C = = C = C A = T = = = ? ? =
0 P025
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = =
0 P026
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P027
(C) (G) = = = (T) T T T C = ? ? G = = = T C = T A = T C A C = I C = = = =
(T) (A) = = = (C) C C C T = ? ? C = = = C T = G G = C T G G = D T = = = =
0 P028
(C) = (T) (C) (A) (T) T T T = T C G G = = C T = T = A = T = = C A = ? = ? ? =
(T) = (C) (T) (G) (C) C C C = C T A C = = T C = C = G = C = = G T = ? = ? ? =
0 P029
(C) = (T) (C) (A) (T) = = = = T = = = ? A C = = T = = = = T G ? ? = = D A T A
(T) = (C) (T) (G) (C) = = = = C = = = ? G T = = C = = = = C A ? ? = = I G C G
0 P030
(C) = (T) (C) (A) (T) T T T = = ? ? G = = C ? = T = A = T = = C A = C = = T =
(T) = (C) (T) (G) (C) C C C = = ? ? C = = T ? = C = G = C = = G T = T = = C =
0 P031
(C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A = T = = C A = C = = T =
(T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G = C = = G T = T = = C =
0 P032
= = = = (A) = T T T = T C G = = = C ? = T = A = T = = C A = ? = ? ? =
= = = = (G) = C C C = C T A = = = T ? = C = G = C = = G T = ? = ? ? =
0 P033
(C) = (T) (C) (A) (T) = = = = T = = = D A C ? = T = = = = T G = A = = D A T A
(T) = (C) (T) (G) (C) = = = = C = = = I G T ? = C = = = = C A = T = = I G C G
0 P034
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P035
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P036
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P037
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = =
0 P038
C = = = = = T T T = = C G G = = = T = = = A = T C A C = = = I G = =
T = = = = = C C C = = T A C = = = C = = = G = C T G G = = = D A = =
0 P039
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P040
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ?
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ?
0 P041
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P042
= = = = = = C C C = = T A C D A = C = = = G = C T G G = = T D A = =
= = = = = = T T T = = C G G I G = T = = = A = T C A C = = C I G = =
0 P043
(C) (G) = = = (T) T T T C = ? ? G = = = T C = T A = T C A C = I C = = = =
(T) (A) = = = (C) C C C T = ? ? C = = = C T = G G = C T G G = D T = = = =
0 P044
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P045
= = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = =
0 P046
= = = = = = C C C = = T A C D A = C = = = G = C T G G = = ? D A = A
= = = = = = T T T = = C G G I G = T = = = A = T C A C = = ? I G = G
0 P047
= = = = = = C C C = = T A C D A = ? = = = G = C = G G = = = (D) (A) = (A)
= = = = = = T T T = = C G G I G = ? = = = A = T = A C = = = (I) (G) = (G)
0 P048
= = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = =
= = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = =
0 P049
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P050
= (A) (T) (C) (A) = = = = T T = = = = = C = ? T G = = = T G = A D = = = T =
= (G) (C) (T) (G) = = = = C C = = = = = T = ? C T = = = C A = T I = = = C =
0 P051
(C) (G) = = = (T) T T T C = C G G = = = ? C = T A = T C A C = I C = = = =
(T) (A) = = = (C) C C C T = T A C = = = ? T = G G = C T G G = D T = = = =
0 P052
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
0 P053
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P054
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
0 P055
= = = = = = C C C = = T A C D A = C = = = G = C T G G = = T D A = A
= = = = = = T T T = = C G G I G = T = = = A = T C A C = = C I G = G
0 P056
= = = = = = C C C = = T A C D A = C = = = G = C T G G = = T D ? ? A
= = = = = = T T T = = C G G I G = T = = = A = T C A C = = C I ? ? G
0 P057
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P058
(C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = G = T G = A = = D A T A
(T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = C = C A = T = = I G C G
0 P059
(C) = (T) (C) (A) (T) = = = = T = = = D A C = = T = = = = T G = A = = D A T A
(T) = (C) (T) (G) (C) = = = = C = = = I G T = = C = = = = C A = T = = I G C G
0 P060
= = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? =
= = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? =
0 P061
(C) (G) = = = (T) T T T C = C G G = = = T C = T A = T C A C = I C = = = =
(T) (A) = = = (C) C C C T = T A C = = = C T = G G = C T G G = D T = = = =
0 P062
= (A) (T) (C) (A) = = = = T T = = = = = C = T T G = = = T G = A D = = = T =
= (G) (C) (T) (G) = = = = C C = = = = = T = C C T = = = C A = T I = = = C =
0 P063
= = = = = = = = = = = = ? = = = = ? = = = = = ? ? = = = = = = = = =
= = = = = = = = = = = = ? = = = = ? = = = = = ? ? = = = = = = = = =
0 P064
= = C T G C = = = = C = = = = = T ? = C = = = ? ? A = T = = I ? C =
= = T C A T = = = = T = = = = = C ? = T = = = ? ? G = A = = D ? T =
0 P065
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P066
= = = = = = C C C = = T A C D A = C = = = G = C T G G = = T = = = =
= = = = = = T T T = = C G G I G = T = = = A = T C A C = = C = = = =
0 P067
(C) = (T) (C) (A) (T) T T T = T C G G = = C ? = T = A = T = = C A = C = = T =
(T) = (C) (T) (G) (C) C C C = C T A C = = T ? = C = G = C = = G T = T = = C =
0 P068
(C) (G) = = = (T) = = = C = = = = D A = = C = T = = = = = = = I = = ? ? =
(T) (A) = = = (C) = = = T = = = = I G = = T = G = = = = = = = D = = ? ? =
0 P069
(C) (G) = = = (T) = = = C = = = = D A = = C = T = = = = = = = I = = = = =
(T) (A) = = = (C) = = = T = = = = I G = = T = G = = = = = = = D = = = = =
0 P070
(C) = (T) (C) (A) (T) = = = = T = = = D A C ? = T = = = = T G = A = = = = T =
(T) = (C) (T) (G) (C) = = = = C = = = I G T ? = C = = = = C A = T = = = = C =
0 P071
(C) = (T) (C) (A) (T) T T T = = C G G = = C T = T = A = T = = C A = C = = T =
(T) = (C) (T) (G) (C) C C C = = T A C = = T C = C = G = C = = G T = T = = C =
0 P072
(C) = (T) (C) (A) (T) T T T = T C G G = = C T = T = A = T = = C A = C = ? ? =
(T) = (C) (T) (G) (C) C C C = C T A C = = T C = C = G = C = = G T = T = ? ? =
0 P073
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P074
= = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = =
0 P075
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P076
= = = = = = C C C = = T A C D A = ? = = = G = C T G G = = T = = = =
= = = = = = T T T = = C G G I G = ? = = = A = T C A C = = C = = = =
0 P077
= (A) (T) (C) (A) = = = = T T = = = = = C = T T G = = = T G = A D = = = T =
= (G) (C) (T) (G) = = = = C C = = = = = T = C C T = = = C A = T I = = = C =
0 P078
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = =
0 P079
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0 P080
(C) (G) = = = (T) T T T = = C G G = = = ? C = T A = T C A C = ? C = ? ? =
(T) (A) = = = (C) C C C = = T A C = = = ? T = G G = C T G G = ? T = ? ? =
0 P081
(C) (G) = = = (T) T T T C = C G G = = = T C = T A = T C A C = I C = = = =
(T) (A) = = = (C) C C C T = T A C = = = C T = G G = C T G G = D T = = = =
0 P082
(C) (G) = = = (T) = = = C ? = = = D A = = C = T = = = = = = = I = D A = A
(T) (A) = = = (C) = = = T ? = = = I G = = T = G = = = = = = = D = I G = G
0 P083
= (A) (T) (C) (A) = = = = T T = = = = = C = T T G = G = T G = A D = = = T =
= (G) (C) (T) (G) = = = = C C = = = = = T = C C T = C = C A = T I = = = C =
0 P084
= (A) (T) (C) (A) = = = = T T = = = = = C ? T T G = G = T G = A D = = = T =
= (G) (C) (T) (G) = = = = C C = = = = = T ? C C T = C = C A = T I = = = C =
0 P085
(C) (G) = = = (T) T T T C = ? ? G = = = T C = T A = T C A = = I C = = = =
(T) (A) = = = (C) C C C T = ? ? C = = = C T = G G = C T G = = D T = = = =
0 P086
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
0 P087
= = = = = = C C C = = T A C D A = C = = = G = ? ? G G = = T D A = A
= = = = = = T T T = = C G G I G = T = = = A = ? ? A C = = C I G = G
0 P088
= = = = = = = = = = = = = = = = = ? = = = = = ? ? ? = = = = = = = =
= = = = = = = = = = = = = = = = = ? = = = = = ? ? ? = = = = = = = =
0 P089
= = C T G C = = = = C = = = = = T ? = C = = C = C A = T = = I G C =
= = T C A T = = = = T = = = = = C ? = T = = G = T G = A = = D A T =
0 P090
= = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = =
END BESTPAIRS2
Phase probabilities at each site
with phase known positions indicated by =
and missing data positions indicated by ?
BEGIN PHASEPROBS
? 0.84 0.84 0.84 ? = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 ? = = 1.00 1.00 ? ? ? = ? = 1.00 =
0.78 = ? 0.78 0.78 0.78 1.00 1.00 1.00 = = 1.00 1.00 ? ? = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
0.72 ? 0.72 0.72 = 0.73 1.00 1.00 1.00 = ? 1.00 1.00 ? = = 1.00 1.00 = = = 1.00 1.00 ? ? = 1.00 1.00 = 1.00 ? = 1.00 =
= 0.95 = = = 0.95 = = = 1.00 = = = = = = = = 1.00 = 1.00 = = ? ? = = = 1.00 = = ? = 1.00
? = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 ? 1.00 = ? = = ? ? ? 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = 1.00
0.80 = 0.80 0.80 0.80 0.80 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 1.00 ? ? = 1.00 1.00 = 1.00 = = 1.00 =
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = ? = =
0.72 = 0.73 0.73 ? 0.73 1.00 1.00 1.00 = 1.00 ? ? 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
0.73 = 0.73 0.73 0.73 0.73 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
0.93 = = = = = = = = = = = = ? 0.99 0.99 = = = = = = 0.62 = = 0.73 = = = = = = = ?
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0.71 = 0.71 0.71 0.71 0.71 = = = = 1.00 = = = 1.00 1.00 1.00 ? = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 =
= = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = =
0.74 = 0.74 0.74 0.74 0.74 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00
= = = = = = = = = = 1.00 = = = = ? = = = = = = = = = = = = = = = = = =
0.90 = = = = ? 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = ? ? = = = 1.00 = ? ? ? ? ? ? 1.00 1.00 1.00 = =
0.86 0.86 = = = 0.86 = = = 1.00 = = = = ? 1.00 = = 1.00 = 1.00 = = ? ? ? = = 1.00 = 0.91 0.91 = =
0.85 0.85 = = = 0.85 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = 1.00 1.00 = 1.00
0.79 = 0.79 0.79 0.79 0.79 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = ? = 1.00 =
0.91 = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = ? ? 1.00 1.00 = = 1.00 = 1.00 = =
0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = ? = = 1.00 =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
0.79 = 0.79 0.79 0.79 0.79 = = = = 1.00 = = = ? 1.00 1.00 ? = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = ? ? =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = =
0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = ? = ? ? =
0.75 = 0.75 0.75 0.75 0.75 = = = = 1.00 = = = ? 1.00 1.00 = = 1.00 = = = = 1.00 1.00 ? ? = = 1.00 1.00 1.00 1.00
0.70 = 0.70 0.70 0.70 0.70 1.00 1.00 1.00 = = ? ? 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
= = = = 0.63 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = ? = ? ? =
0.74 = 0.74 0.74 0.74 0.74 = = = = 1.00 = = = 1.00 1.00 1.00 ? = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = =
0.91 = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ?
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = =
0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = ? 1.00 1.00 = 1.00
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = ? = = = 1.00 = 1.00 = 1.00 1.00 = = = 0.86 0.86 = 0.86
= = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = ? = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= 0.84 0.84 0.84 0.84 = = = = 1.00 1.00 = = = = = 1.00 = ? 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 =
0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = 1.00
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 ? ? 1.00
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0.80 = 0.80 0.80 0.80 0.80 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00
0.74 = 0.75 0.75 0.75 0.75 = = = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00
= = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? ? =
0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = =
= 0.84 0.84 0.84 0.84 = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 =
= = = = = = = = = = = = ? = = = = ? = = = = = ? ? = = = = = = = = =
= = 0.93 0.93 0.93 0.93 = = = = 1.00 = = = = = 1.00 ? = 1.00 = = = ? ? 1.00 = 1.00 = = 1.00 ? 1.00 =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = =
0.73 = 0.73 0.73 0.73 0.73 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
0.85 0.85 = = = 0.85 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = = ? ? =
0.85 0.85 = = = 0.85 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = = = = =
0.70 = 0.70 0.70 0.70 0.70 = = = = 1.00 = = = 1.00 1.00 1.00 ? = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 =
0.71 = 0.71 0.71 0.71 0.71 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 =
0.72 = 0.72 0.72 0.72 0.72 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = ? ? =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = ? = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = =
= 0.84 0.84 0.84 0.84 = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = =
0.77 0.77 = = = 0.77 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? 1.00 = ? ? =
0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = =
0.86 0.86 = = = 0.86 = = = 1.00 ? = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = 1.00 = 1.00 1.00 = 1.00
= 0.87 0.87 0.87 0.87 = = = = 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 =
= 0.87 0.87 0.87 0.87 = = = = 1.00 1.00 = = = = = 1.00 ? 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 =
0.85 0.85 = = = 0.85 1.00 1.00 1.00 1.00 = ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = = = =
= = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = =
= = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = ? ? 1.00 1.00 = = 1.00 1.00 1.00 = 1.00
= = = = = = = = = = = = = = = = = ? = = = = = ? ? ? = = = = = = = =
= = 0.92 0.92 0.92 0.92 = = = = 1.00 = = = = = 1.00 ? = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 =
= = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = =
END PHASEPROBS