LOCUS CCND3 8987 bp DNA PRI 01-JUN-2002 DEFINITION Homo sapiens cyclin D3 (CCND3) gene, complete cds. ACCESSION CCND3 VERSION KEYWORDS . SOURCE Homo sapiens. ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 8987) AUTHORS Rieder,M.J., Livingston,R.J., Braun,A.C., Montoya,M.A., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (01-JUN-2002) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..8987 /organism="Homo sapiens" /db_xref="taxon:9606" variation 92 /replace="T" /frequency="0.01" variation 104 /replace="G" /frequency="0.03" variation 183..184 /replace="-" /frequency="0.01" repeat_region 217..360 /rpt_family="MER1_type" /rpt_type=dispersed variation 261 /replace="A" /frequency="0.01" repeat_region 362..436 /rpt_family="MIR" /rpt_type=dispersed variation 376 /replace="A" /frequency="0.24" variation 498 /replace="A" /frequency="0.01" mRNA join(888..1248,2115..2330,5306..5465,6005..6141, 6593..7768) /gene="CCND3" /product="CCND3" gene 888..7768 /gene="CCND3" variation 1000 /gene="CCND3" /replace="T" /frequency="0.03" CDS join(1051..1248,2115..2330,5306..5465,6005..6141, 6593..6760) /gene="CCND3" /codon_start=1 /product="cyclin D3" /translation="MELLCCEGTRHAPRAGPDPRLLGDQRVLQSLLRLEERYVPRASY FQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTRKAQLQLL GAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDF LAFILHRLSLPRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGAC SMSGDELTELLAGITGTEVDCLRACQEQIEAALRESLREAAQTSSSPAPKAPRGSSSQ GPSQTSTPTDVTAIHL" misc_feature 1447..1559 /gene="CCND3" /note="Region not scanned for variation" variation 1516 /gene="CCND3" /replace="G" /frequency="0.02" variation 2316 /gene="CCND3" /replace="T" /frequency="0.01" variation 2583 /gene="CCND3" /replace="G" /frequency="0.20" misc_feature 2587..2703 /gene="CCND3" /note="Region not scanned for variation" variation 3225 /gene="CCND3" /replace="T" /frequency="0.01" misc_feature 3611..3915 /gene="CCND3" /note="Region not scanned for variation" variation 3714 /gene="CCND3" /replace="T" /frequency="0.01" variation 3777 /gene="CCND3" /replace="C" /frequency="0.24" repeat_region 3790..3941 /rpt_family="MIR" /rpt_type=dispersed variation 3911..3918 /gene="CCND3" /replace="-" /frequency="0.20" variation 4008 /gene="CCND3" /replace="C" /frequency="0.01" variation 4074 /gene="CCND3" /replace="G" /frequency="0.01" misc_feature 4431..4588 /gene="CCND3" /note="Region not scanned for variation" variation 4854 /gene="CCND3" /replace="C" /frequency="0.01" repeat_region 5049..5115 /rpt_family="MIR" /rpt_type=dispersed variation 5163 /gene="CCND3" /replace="T" /frequency="0.23" variation 5264 /gene="CCND3" /replace="A" /frequency="0.09" variation 5284 /gene="CCND3" /replace="T" /frequency="0.01" variation 5482 /gene="CCND3" /replace="T" /frequency="0.02" repeat_region 5639..5758 /rpt_family="MIR" /rpt_type=dispersed variation 5955 /gene="CCND3" /replace="A" /frequency="0.03" misc_feature 6141..6503 /gene="CCND3" /note="Region not scanned for variation" variation 6554 /gene="CCND3" /replace="C" /frequency="0.02" variation 6655 /gene="CCND3" /replace="T" /frequency="0.11" variation 6656 /gene="CCND3" /replace="T" /frequency="0.36" variation 6805 /gene="CCND3" /replace="T" /frequency="0.01" variation 7007 /gene="CCND3" /replace="-" /frequency="0.01" variation 7249 /gene="CCND3" /replace="A" /frequency="0.01" variation 7432 /gene="CCND3" /replace="A" /frequency="0.25" variation 7501 /gene="CCND3" /replace="T" /frequency="0.02" variation 7739 /gene="CCND3" /replace="A" /frequency="0.01" variation 7784 /replace="A" /frequency="0.22" repeat_region 7835..7934 /rpt_family="MER1_type" /rpt_type=dispersed variation 7880 /replace="C" /frequency="0.01" variation 7928..7930 /replace="-" /frequency="0.21" variation 7972 /replace="A" /frequency="0.01" variation 7991 /replace="T" /frequency="0.01" variation 8045 /replace="T" /frequency="0.01" variation 8087 /replace="A" /frequency="0.15" repeat_region 8411..8613 /rpt_family="MER1_type" /rpt_type=dispersed variation 8421..8422 /replace="-" /frequency="0.01" repeat_region 8619..8933 /rpt_family="Alu" /rpt_type=dispersed variation 8676 /replace="A" /frequency="0.22" variation 8740 /replace="T" /frequency="0.01" BASE COUNT 1905 a 2423 c 2512 g 2147 t ORIGIN 1 aagtttggga ggtggaagaa atgcaaccgg tagatctcac agagtctgtg caagaaactg 61 attcaatgag aatctagttt ctccgtccac agtttctcca aacagaaact aaggccgact 121 ttaggggctt gtccaaacct aggcaagcaa cttaacaagg tgaggccatg actccatggc 181 ctttccgttc tgttatatgc tgacttagac taaagctctc atactttaaa gtgcacagaa 241 atctagttaa aatgcagatt ctgattcagg ttaggggtgg gcctgagagt ctgcatttct 301 aaccagctcc caggcgatga ccacgcacgg gacaggtctg ggatcacagt ttaactagca 361 atggtgtaga acacagaatc tgcagcaaga aggccagctt cccaatccta gctctgccac 421 ggaccaactg aatgacagtt gcctcggttt ccgagttttc gtgaagatgt agtgagtcat 481 tacatcgtga ggctttcgag cagcgttcac taagaactag ctctgacatt atttatcgca 541 ttccttagag caagcagccg gtgaagtagg gtttgacgaa tgaataagtg aatgaatgac 601 ctttggagaa aaattgtttc ctgggtgact agagtccgag aagcaaaatg ggagggcccg 661 tgggtgggta ggaggcccac ctcctagaaa gttctctgca cccggtggtc cagagggcct 721 ggagtgcccg gaagccggcc ggcttgcgct cagcggccca atggggccgc gggagggagg 781 ggagagcgct cagccaaccc tttccgtccg gggcgccgca gccccgcccc tcggagcgtt 841 gcgacgtccg agcattccac ggttgctaca tcgtcgcgag gggcggggcg cctgtcaggg 901 aagcggcgcg cgcgcgggcg gcgggcgggc tggggatccg ccgcgcagtg ccagcgccag 961 cgccagaccc gcgccccgcg ctctccggcc cgtcgcctgc cttgggactc gcgagcccgc 1021 actcccgccc tgcctgttcg ctgcccgagt atggagctgc tgtgttgcga aggcacccgg 1081 cacgcgcccc gggccgggcc ggacccgcgg ctgctggggg accagcgtgt cctgcagagc 1141 ctgctccgcc tggaggagcg ctacgtaccc cgcgcctcct acttccagtg cgtgcagcgg 1201 gagatcaagc cgcacatgcg gaagatgctg gcttactgga tgctggaggt accgcccgga 1261 cgcgtccccc tcccccaccg ctcccgggtc tggacacacc ggggccgccc tgtcgggaca 1321 tcccggtccc cacagcaatc tgcaggatgc tccgaggcta agactcccgg ggcctggcct 1381 ttcactaggg cacccacgcc agctgcctcc cttgctttcc cgagccctaa tcggctcctc 1441 ccgacagtga ctgccagtca cttggcaccc taactgtgcc tctcttcggg ccgagcaaac 1501 gggaccaagg acactctctc cccttcggct tctcacagcg tctcccgctt ccctccgcct 1561 cccggccttc tccggagagc gcgcctggaa aaccctgggc tcggccgccc ccgcccggga 1621 gccggttcct gtgtctttcg cggggttctg gcggggaagg cgatgggggt ggcgcgcgcc 1681 ctgttccggc cgacagggaa atgaaaagtg caggaggcag cggcaggagc ctcctccctt 1741 cccctcgggt gtgtgcagtg gtggcggtga tgggggtgag gtcccagctc tctggctacc 1801 atgggtgacc cttgcgtccc acttcccctc gctgtggggg aggggagtct ccgtttggaa 1861 tcctccgtga gcaagggctc cttggcttta ccactccccc gtcaagggga gaggggagga 1921 ggccgcgcag aggaagtggg gggcgtcacc ttggggaggg cgcatcctcc tcctttattg 1981 gtccttgtct ctctaagtag cttaccctct ctgccgtttt tgctccctat cccacctcac 2041 ttcagcgctc ccaccccccc gctgctgtgt tccccacgct ccagacccag cagtgactgt 2101 gcgccctccc ccaggtatgt gaggagcagc gctgtgagga ggaagtcttc cccctggcca 2161 tgaactacct ggatcgctac ctgtcttgcg tccccacccg aaaggcgcag ttgcagctcc 2221 tgggtgcggt ctgcatgctg ctggcctcca agctgcgcga gaccacgccc ctgaccatcg 2281 aaaaactgtg catctacacc gaccacgctg tctctccccg ccagttgcgg gtgcgtgtgt 2341 aactcccccc acccccgaca cgtattgtct ccccactttc caggaaaagg aaagcttgag 2401 atatcagagg ctttctgccc cctggagagg aagcaagggg atcaggacct ttgggaaagg 2461 aattggggtg gaacaaacga tggggcattg tggtgtgatg gttagtatca ctcccgccca 2521 ggcttgagct gcaggcaggc attaaacccc ctcctcctga cctccagggg atgccactcc 2581 ttcctggtct ttcccccaga tagcaacaag tcaaattgca tgtctacact cactagtact 2641 ttgcctctgg gtttacgcag ccaccatgag ttatttattg gcagcagaag ggcatgcctg 2701 cacaccccca ctggagtagg ggagtggaat gtgcttcatg tgggggaggg ggttttgcct 2761 tggttgagtc tttatcctca tgtggacttt gtgatagaaa agcctcccag agccaattaa 2821 agccaggccc tgattgcttt aaggaagggc tgatgtattt catcccacct tctttgcttc 2881 ctcttatatc ccggaagaaa cagcttcttc ctaatccttc ctcgtcctca ttctgaggaa 2941 ctggagcagc tgctttgggc ctggtggaaa cagctccctc ttcccccctt agcccaaggc 3001 ccaagctgag ggacagacag ggaggtgagc tgcatctgct tccgatgtga taatggtgcc 3061 ccctcccctg gcccgccctc tctgaccaag gtctttcata accctgtggg gagctgctgt 3121 cactcctgtg gtttgggaag tggctccctg ggcctcttgc tggaaacttg ggctgggctc 3181 aggccgggca ggaaagtcac cggttctgtc ccgcctcaga aggagcctgg ggaggaggcg 3241 ggggagctgc tggatctgga agaggttatt taggacatgc agattgtctc ctagggaggc 3301 tgggggagag ggtgggtgag ctggcacctt cctccacctt gctctgtggc gggccaagtc 3361 ttctgctgac cctgagagga gtctctgggc cccatctccc agggaggagg gcagcaagca 3421 ggctgctgtg attggctggc agggaagcca gggtactggg gcccccgact gctgtgagtc 3481 gaggaacagg attcctcttc ctgccaagta gctcagagat gggagtagga ggccagagtt 3541 gggaatccag gaggcgccac agctctttgt gatgaatctg gtagtttttg gcaagtctga 3601 aggtggagct agtttccagg gccagagagc aagatgtttt tggaggggtt ggggctggaa 3661 ggtagaaggg gaacttcctt tttgtgaaaa gatggaggtg gtttgtgtgc ccacgtatga 3721 gggtttttca gtacaggcaa aaagtactct tccctctgcc tgagctgggg gtggagtgcc 3781 caaaagactt cctagaaggt caaggttgga agggacctct gagaactcca gttggtccaa 3841 atccgtgtgc agcagaggag gctgaggccc aaggaaggag ggcaaggtcc tgcctcagca 3901 tcgcactgag cagatgagtg tagaacctgg gtcttctagc tagaccaggt tgccttaaaa 3961 gtcaggaatg tgatggccgc tgccacctac tgaagctaag cactcccagg ggtgtgttct 4021 ccaccagtta acactgggat tctctggttg cctggatatg gggaaaggtg gccactttcc 4081 ctcaaacaca accccttgcc tccccatagg gagagtccca ctcccagttg ccttccagat 4141 gcttccttag aagctgagtc ccttctgttt actgctgagt taggagttgg ctcctgggac 4201 atgcactagg ggtagcgttg taatttatct gtctcacttc tggctccagg ccaggctatt 4261 ttctctgggg ctctgtgagg gtaggggttg atttgagagg ctgacaccta agctggggcc 4321 aagagagaga cagctgtggc tggggcctgg aagaggttgg gtggggttgc catttctgcc 4381 tcaataagga gtcaaaccca caagttcctt cctgagataa aacaatgaag aaatcctcat 4441 gtgtgcaact cagaaatggg gccaggtctg ggaacccatg acgagtggac tggggtggag 4501 ctcccagcct tctcccgaga cctagtactg gcaggtaggc ttgggtaggt gaggataggg 4561 cttgatccct ctggaatcat ttggagccat cctgtctggc ttggcctcta cctatcctcc 4621 tgaaagtcaa gtggcatggg gcactacggg ttccagctaa agggggtggg gtggggtgct 4681 atacctcagg acccatccct gatatcctac caaggggatg tggcttgggt tgggcaatct 4741 cccctttgag gaacctgaga aaaggctctg tggctgtcat tggaggagtc atactccctt 4801 ctgttgattc aagaagtgtg gacttggctg ggatgcagag ttgcagggga agctagtggt 4861 gatctcccct ttcacaaatc cttggggttg agagagtctt tctgcttcat cccagaagag 4921 agcccagttc atggtgatgc tgtggtatct gctgcttccg tctttcagcc ctggctggag 4981 aaatcctcag agccctgaat gaagtcagga gaaggcctgg attattggcc ccttaaacat 5041 aaccagacag gattaaaagg gataatccat gtaaagcatg ttgtcctggc acctagtaaa 5101 tgatcagtaa gtgctcaaag cacatgcctc ctcctcttcc ctgccttgaa ctccatggtg 5161 cccggcctta aaatcagaaa cagaactggg gtcttgggct ttaaaagttt gatgggcttc 5221 cctgcctgag actttgagac ttctgctttg ctccctcctc ttctcttctc cagccactga 5281 ccccaccctt tccccgcttt ttcaggactg ggaggtgctg gtcctaggga agctcaagtg 5341 ggacctggct gctgtgattg cacatgattt cctggccttc attctgcacc ggctctctct 5401 gccccgtgac cgacaggcct tggtcaaaaa gcatgcccag acctttttgg ccctctgtgc 5461 tacaggtaag agccctatgc acatttttgc caaattggaa aaatcagaag acttataagg 5521 gtgagaggta actgaagatt ctggtttata ctgtcaaaat tcctttgtga aaattatacc 5581 ccctctgagc ccccagtctc aatgcagaaa agcaggttat aatcagctat atgggatctc 5641 agacccctcc agtttgtagt ggggacactg agggtataga gagaagtgac ttgcccaagg 5701 tctcacagtg aacaggttgg gaacagaacc ccagtctctt ggccctagtt gtgttcccat 5761 actagggagt gtcttgtcta ttcccgggac ctatggaaac tggcagttgg ttctgatctc 5821 taggaaagat actctttcct gtcttcctcc cttgctgata tcttgcccca cccactgctg 5881 gagttttcca gcatgtcctc tgctctactc atgctgcctg gcactttcca aggagtcgga 5941 agtccatgct ggccgttatc cttcaggttt ccttctctca tggttccctt tcctcctctc 6001 caagattata cctttgccat gtacccgcca tccatgatcg ccacgggcag cattggggct 6061 gcagtgcaag gcctgggtgc ctgctccatg tccggggatg agctcacaga gctgctggca 6121 gggatcactg gcactgaagt ggtgagtgct gggtagctgg gcagcagcct ctccattcat 6181 aaagtagtgc tatgccctga gcctccagta gagggaaacc tccaacccca acctggtccc 6241 aagtcctggt ttcacaacct tggggctttg tggcttttta tctcctgcct tggtctgggg 6301 aagagcaagt atcttgggtg gggtgaaggg cactggccct aggggttctt ttcttgccaa 6361 gtggtgtgct ggagtggggg tggggggttt ggtgtcagat gcagggctgc tctcacactc 6421 ccttgccaca tcctcttgct agtttctgag aactaaagag cgattcctgg ggccgggctg 6481 tggcctaacc tccccagact tccccatgtg ttgggagctg tccttcccct gcacctgctg 6541 ccagatgcta tggggggagt gtttgctcct cactcttctc ccatgttccc aggactgcct 6601 gcgggcctgt caggagcaga tcgaagctgc actcagggag agcctcaggg aagccgctca 6661 gaccagctcc agcccagcgc ccaaagcccc ccggggctcc agcagccaag ggcccagcca 6721 gaccagcact cctacagatg tcacagccat acacctgtag ccctggagag gccctctgga 6781 gtggccacta agcagaggag gggccgctgc cacccacctc cctgcctcca ggaaccacac 6841 cacatctaag cctgaagggg cgtctgttcc cccttcacaa agcccaaggg atctggtcct 6901 acccatcccc gcagtgtgca ctaaggggcc cggccagcca tgtctgcatt tcggtggcta 6961 gtcaagctcc tcctccctgc atctgaccag cagcgccttt cccaactcta gctgggggtg 7021 ggccaggctg atgggacaga attggataca tacaccagca ttccttttga acgccccccc 7081 cccacccctg ggggctctca tgttttcaac tgccaaaatg ctctagtgcc ttctaaaggt 7141 gttgtccctt ctagggttat tgcatttgga ttggggtccc tctaaaattt aatgcatgat 7201 agacacatat gagggggaat agtctagatg gctcctctca gtactttgga ggcccctatg 7261 tagtccgtgc tgacagctgc tcctagaggg aggggcctag gcctcagcca gagaagctat 7321 aaattcctct ttgctttgct ttctgctcag cttctcctgt gtgattgaca gctttgctgc 7381 tgaaggctca ttttaattta ttaattgctt tgagcacaac tttaagagga cgtaatgggg 7441 tcctggccat cccacaagtg gtggtaaccc tggtggttgc tgttttcctc ccttctgcta 7501 ctggcaaaag gatctttgtg gccaaggagc tgctatagcc tggggtgggg tcatgccctc 7561 ctctcccatt gtccctctgc cccatcctcc agcagggaaa atgcagcagg gatgccctgg 7621 aggtggctga gcccctgtct agagagggag gcaagccctg ttgacacagg tctttcctaa 7681 ggctgcaagg tttaggctgg tggcccagga ccatcatcct actgtaataa agatgattgt 7741 gaaataaaac tggctttggc ttcttggatt ggtgtgtggg taagtctatt tctgcactgt 7801 atgaggtaag gaggtggaag tcaatggtct aaagcaggga tcattgagcc ttttctgtaa 7861 agggctggat atttaggctt tgtggggtac atggtctctg acccaaatat agtcagttct 7921 gctttataat gtgacctatg cgttcctaaa aatcactatg ccatgcaaaa ttgcacaata 7981 aagaccacag gtctcatggg aaaaatgggg cttgaagcac aacactcaaa tgagtgacac 8041 atttaaaaaa aaaggatagc ttggttttta catatgtcaa atggttgaga aattatatca 8101 caataaatat ggccttttat cttgaagaca tgcactttgc ttttggaagt ggacgtcgga 8161 agggttgctc aacacaggtg gggagatgag tgaggtagct ggtacatgtt taggtgtgag 8221 ttttgtgtac tacttaggct tggttcagct agatacagtt tcccatattc acctactatt 8281 tctcgaggat gaaatcacac acaagcaaac atgaagtctg cgttatgatc aaactgttcc 8341 caaatatatt aaatgggttg gaacaaatgc gcaatttcga aagcaaataa caagggttat 8401 agcaggatta tacttaaact ctgctgttgt agcacaaaac cagccacaga aaacatgtaa 8461 atgggtgagc atggctgttc caacaaaact atttatggat gctgaaactg gaatttcatg 8521 taattcctac ctatcacaaa atactgtttt aattttttcc ccatttaaaa atggaaaaat 8581 cattcttagc tcatgggcca cacaaaaatg ggcacttggg ctgggtgcag tggctcatgc 8641 ctgtaatccc agcactttgg gaggccgagg cgggtggatc acctgaggtc aggagtttga 8701 gaccagcctg gccaacctgg tgaaacccct tctccacccc gtctctacta aaaatacaaa 8761 aattagccag gcgtggtggc acgcacctgt agtcccagct actcaggagg ctgaggcagg 8821 agaatctctt gaaccatgga ggcggaggtt gcagcgagcc gagatcatgc cactgtactc 8881 cagcctgggc gacagagcga gactccgtct caaaaaacaa atcaacaaaa aaaggggcac 8941 ctggccctag tttactagtc actagtctaa agctttcatt ggctgaa //