LOCUS CCNA2 9323 bp DNA PRI 04-JUN-2002 DEFINITION Homo sapiens Homo sapiens cyclin A2 (CCNA2) (CCNA2) gene, complete cds. ACCESSION CCNA2 VERSION KEYWORDS . SOURCE Homo sapiens. ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 9323) AUTHORS Rieder,M.J., Livingston,R.J., Braun,A.C., Montoya,M.A., Chung,M.-W., Miyamoto,K.E., Nguyen,C.P., Nguyen,D.A., Poel,C.L., Robertson,P.D., Schackwitz,W.S., Sherwood,J.K., Witrak,L.A. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (04-JUN-2002) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478, Department of Genome Sciences, Seattle, WA (URL: http://egp.gs.washington.edu). FEATURES Location/Qualifiers source 1..9323 /organism="Homo sapiens" /db_xref="taxon:9606" variation 52 /replace="C" /frequency="0.29" variation 91 /replace="-" /frequency="0.30" variation 294 /replace="G" /frequency="0.01" variation 564 /replace="A" /frequency="0.05" variation 648 /replace="A" /frequency="0.18" repeat_region 800..944 /rpt_family="MIR" /rpt_type=dispersed variation 987 /replace="-" /frequency="0.40" variation 1184 /replace="G" /frequency="0.06" variation 1339 /replace="A" /frequency="0.32" variation 1398 /replace="T" /frequency="0.01" variation 1402 /replace="C" /frequency="0.01" variation 1435 /replace="T" /frequency="0.31" variation 1469 /replace="C" /frequency="0.01" variation 1471 /replace="-" /frequency="0.01" mRNA join(1485..1806,2576..2819,4131..4243,4457..4680, 5643..5850,6309..6422,7045..7178,7536..7859) /product="CCNA2" gene 1486..7852 /gene="CCNA2" CDS join(1594..1806,2576..2819,4131..4243,4457..4680, 5643..5850,6309..6422,7045..7178,7536..7584) /gene="CCNA2" /codon_start=1 /product="Homo sapiens cyclin A2 (CCNA2)" /translation="MLGNSAPGPATREAGSALLALQQTALQEDQENINPEKAAPVQQP RTRAALAVLKSGNPRGLAQQQRPKTRRVAPLKDLPVNDEHVTVPPWKANSKQPAFTIH VDEAEKEAQKKPAESQKIEREDALAFNSAISLPGPRKPLVPLDYPMDGSFESPHTMDM SIVLEDEKPVSVNEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWL VEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPPEVA EFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAM FLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLM DLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPETLNL" variation 2310 /gene="CCNA2" /replace="G" /frequency="0.09" variation 2584 /gene="CCNA2" /replace="A" /frequency="0.01" repeat_region 2945..2985 /rpt_family="MIR" /rpt_type=dispersed variation 3833 /gene="CCNA2" /replace="T" /frequency="0.01" variation 4080 /gene="CCNA2" /replace="G" /frequency="0.01" variation 4160 /gene="CCNA2" /replace="A" /frequency="0.04" variation 4322 /gene="CCNA2" /replace="A" /frequency="0.01" variation 4570 /gene="CCNA2" /replace="A" /frequency="0.08" variation 4715 /gene="CCNA2" /replace="A" /frequency="0.04" variation 4747 /gene="CCNA2" /replace="A" /frequency="0.02" variation 4793 /gene="CCNA2" /replace="A" /frequency="0.02" repeat_region 4982..5292 /rpt_family="Alu" /rpt_type=dispersed variation 5034 /gene="CCNA2" /replace="C" /frequency="0.49" variation 5084 /gene="CCNA2" /replace="T" /frequency="0.01" variation 5241 /gene="CCNA2" /replace="A" /frequency="0.02" variation 5330..5331 /gene="CCNA2" /replace="-" /frequency="0.01" variation 5388 /gene="CCNA2" /replace="T" /frequency="0.05" variation 5515 /gene="CCNA2" /replace="T" /frequency="0.01" variation 5923 /gene="CCNA2" /replace="C" /frequency="0.40" variation 6215 /gene="CCNA2" /replace="A" /frequency="0.39" repeat_region 6549..6758 /rpt_family="MER2_type" /rpt_type=dispersed variation 6698 /gene="CCNA2" /replace="A" /frequency="0.01" variation 6762 /gene="CCNA2" /replace="C" /frequency="0.06" variation 6894 /gene="CCNA2" /replace="T" /frequency="0.31" variation 7194 /gene="CCNA2" /replace="C" /frequency="0.31" variation 7256 /gene="CCNA2" /replace="C" /frequency="0.31" variation 7284 /gene="CCNA2" /replace="C" /frequency="0.01" variation 7382 /gene="CCNA2" /replace="A" /frequency="0.01" variation 7420 /gene="CCNA2" /replace="T" /frequency="0.01" variation 7793 /gene="CCNA2" /replace="A" /frequency="0.01" variation 8067 /replace="C" /frequency="0.01" variation 8245 /replace="G" /frequency="0.01" variation 8412 /replace="G" /frequency="0.07" variation 8504 /replace="C" /frequency="0.10" variation 8905 /replace="A" /frequency="0.10" repeat_region 8964..9251 /rpt_family="Alu" /rpt_type=dispersed variation 9099 /replace="G" /frequency="0.29" variation 9133 /replace="T" /frequency="0.02" variation 9218 /replace="A" /frequency="0.02" BASE COUNT 2743 a 1693 c 1960 g 2927 t ORIGIN 1 ttactctgct gcagtttgtg gaaatgctgg acttggctca gtgctataaa ttgtagccag 61 gaaataagaa gagcttacac agagtcgggg gatcttaatt agacatgctg taaccagtgg 121 agctattcag cgtgcttcaa gtgaagagtg cagaaatagt gatgccatct tagattttcc 181 tacactagta tcttctagat ctctttttat catatatgac attaaggcta cagaagtttt 241 gtgcattaat cttaattcat atttattaat ttcaagggaa tattgaaagg ttttaaaatg 301 gcatacagat aatggaaaat aagctttatg tttcaagaag ggcagactca cgaatttttt 361 agaaaacagt gcttcttaat gatatgctat tatacttatt agttatgtgc aagctttgta 421 tattcttata tttatatata aatataaaaa tttgttaaag gcacgtatag ttaagagagt 481 tttattttaa taaggtcata ttgtttttac tatgtttaaa aaactttact tctgaaagga 541 acataattat atctaggtca ctagaacgtc attgtgtttt ttgttggttg ccacagcttg 601 gggaaaaata gaaaaaaatt aatgactgta tttgaatatt ttgtaatgca ctgctattta 661 ttatatatat caacagtagt tcaaggtgcc atcttaaatt aattgcatct tcattaggaa 721 aaataaaaag cataaaacac aatttctggt tactatgaat aaacgcctaa atgttaagat 781 gacattacag tcttgacact tgagtactgt attactatgt gagctccgtg ttaaataatt 841 tatgcacatt atttaatcct aacaaccata tgactgtagt tattagtccc tattaacaca 901 taagaaaacg gagaatcgga gatactgaaa aacgtgcccc agattttaga cctttggaaa 961 aagtcactta agctaactag acgtcccaga gctaaaggct gggcaaccca aatgatagtc 1021 gccaaagttt aattccgttt aattccctaa aaggcttaga gtcagccttc ggacagcctc 1081 gctcactagg tggctcagct taaaataatc ggaagcgtcg ggccctaaat cctacctctc 1141 cccgccccgc gcaggcgttt tctcccgccc cagccagttt gtttctccct cctgccccgc 1201 ccctgctcag tttcctttgg tttacccttc actcgcctgc gaccctgtcg ccttgaatga 1261 cgtcaaggcc gcgagcgctt tcattggtcc atttcaatag tcgcgggata cttgaactgc 1321 aagaacagcc gccgctccgg cgggctgctc gctgcatctc tgggcgtctt tggctcgcca 1381 cgctgggcag tgcctgcctg cgcctttcgc aacctcctcg gccctgcgtg gtctcgagct 1441 gggtgagcga gcgggcgggc tggtaggctg gcctgggctg cgaccggcgg ctacgactat 1501 tctttggccg ggtcggtgcg agtggtcggc tgggcagagt gcacgctgct tggcgccgca 1561 ggctgatccc gccgtccact cccgggagca gtgatgttgg gcaactctgc gccggggcct 1621 gcgacccgcg aggcgggctc ggcgctgcta gcattgcagc agacggcgct ccaagaggac 1681 caggagaata tcaacccgga aaaggcagcg cccgtccaac aaccgcggac ccgggccgcg 1741 ctggcggtac tgaagtccgg gaacccgcgg ggtctagcgc agcagcagag gccgaagacg 1801 agacgggtaa agggatgcgg gatatctgca ggagggtggg tcgagcaggg tttggcattg 1861 gcttagcagg cagagaagag tggcgagaag gcatgtcctg ggcttttgga agggggccag 1921 ggtctggagt gcagttggtg ctggtgtgtg gtttgccaca gtaggagttc tcccatatta 1981 gcatcaggac cccgccaaca ctgtgtgtat gctgccggtc tgctctctat agggggcatc 2041 tgcctgtaca taatggggtc aaaccaagct ctaaaacgtg tagtcttcgc tcagctccgc 2101 gcctttctct ccacttttaa accccaggca ctgctgtagg actctgaccc ctatcctcct 2161 cacgcttaag agatgacctc tactttagaa aagcgtgtac aaaatacttt gcttttggca 2221 aattccgcca ttttagccgg atttgctctg ttgctccacc ctcgggcgac agtggtgaac 2281 caacaatttt tttgctgtct ttcctaaact tgtcacgtat tggcctgtca cccgaccctt 2341 cttgtggccc tgataagttt tgcataattc cacctagtgt tatctattga tagcctttgt 2401 gggaatgcct gtgacaaatg ggaacatccc ttctcttttg aatactgaaa ctcttctttg 2461 tcccagaaag tttaattcct gatagagtat ttgggagaaa aagcaaaggc caacacccat 2521 aagagaaaga atgcaagact agtaggctca aagccagtta ttaatttttt tttaggttgc 2581 accccttaag gatcttcctg taaatgatga gcatgtcacc gttcctcctt ggaaagcaaa 2641 cagtaaacag cctgcgttca ccattcatgt ggatgaagca gaaaaagaag ctcagaagaa 2701 gccagctgaa tctcaaaaaa tagagcgtga agatgccctg gcttttaatt cagccattag 2761 tttacctgga cccagaaaac cattggtccc tcttgattat ccaatggatg gtagttttgg 2821 taagttttaa ggaaaatctg tgtggaatta cggtaattat aattattaga tgatattaat 2881 gatttgcatt ttaagatgtc ttatgtagtc attttgacta tagtgagtta ggtttaatgt 2941 aacaaggctt agaaaggatg tgacttatct cagatctcac agctaacact tgacttggtg 3001 acatacaaaa agatccttat ccagtgctct ttcaggttca ctgccagtca catcaatcta 3061 attataatta gatcttaaat gcttatttta atctgatccc ataaatgtgt tcttggttgg 3121 gagaatagat ttcagtttta tttaactcac ttatatatca cttagtgcta tttgaagatg 3181 cagtcttaaa tattgtgatt acataacgtc tcttccagtt ttataatttt gtttctataa 3241 aaccagtctg gattagcatc tgataccaga aagtgacact tttcctccta caagtaaata 3301 gttgtaccat ggctgtttac tcttacccat gtattaaagt agcttctgta aacagctctt 3361 tgcagtttgt actatttctt tgccctaggg atattgagtc actggacagc tcactaaatc 3421 caatctcatt ttagttttag ttgtattgat tgtgaggaag gaggggtgag caggaaaagt 3481 cctttggaaa taataatttg tgtgttttta tcaaaatttt gcagaaaatg tttaatctca 3541 aggtgatctt tgaagtgaaa ggaataatgg atgatactct ttgcttcaaa ataatttata 3601 ctacaaaaaa taaattattt atagtgttaa tccatttgcc cataacaaac ctaatttctt 3661 aataacactt gttaatagag gccatttaac tgatgctagc tattgcctac ttgtgcttta 3721 tatatgtcag actctgggat ctgcagtttc tcttgggaca aatcttagat attatctcaa 3781 aacttggatt ttaaaagtgt tctgtcctaa cagaaccacc atgccatttg ctcctttctg 3841 ttgtggaaga tggatacttt aagataatac ctgattctca ttttcctgtt aggggcctac 3901 caatatgttt tttttttttt ccctcattaa ctaaaatcat tccaaagttc tatgtacaga 3961 gatactgaga ctagggtaaa atattctaca tattttgtca tgagaagctc tttttagttt 4021 gaagaaataa gtgctttgtt aatatgagat tccttccatg gcagtcattt ttagctatta 4081 aactaaatag gcaaacaatt aatttaatca tatcttttga attgtcccag agtcaccaca 4141 tactatggac atgtcaattg tattagaaga tgaaaagcca gtgagtgtta atgaagtacc 4201 agactaccat gaggatattc acacatacct tagggaaatg gaggtaaagg ttctctgaat 4261 ccagtttgta taatgtattt gttaaatgtg gctaaatgaa attgagagga taatgtttaa 4321 atttttaaac taatgaatta ttctaatgct acagttaagt ttatagcatg tagcctctcg 4381 taattaatgg taaaataatc taattgcagt ttttacacta gaataatttt aacactataa 4441 ataattttct caataggtta aatgtaaacc taaagtgggt tacatgaaga aacagccaga 4501 catcactaac agtatgagag ctatcctcgt ggactggtta gttgaagtag gagaagaata 4561 taaactacag aatgagaccc tgcatttggc tgtgaactac attgataggt tcctgtcttc 4621 catgtcagtg ctgagaggaa aacttcagct tgtgggcact gctgctatgc tgttagcctc 4681 gtaagtctac cttggtttgt ttaaaagtga tcacgacctt ttgtctaggg aagaaattga 4741 tttttttaat ggtgaccttt taacatacac caggcagagt cagtgactac tttagggatg 4801 gcaatgtgct ggggcttagg gcagtggagg aggatgaaac tgttctaatc tagaacacta 4861 attttccccc aactggattc cttgaacatg atatagtaca ctaggttaca aattttaaaa 4921 cattttcctt ccaatattac tttctggcat ataagcagtg tctcttttat taagaagtaa 4981 aggctgggtg cggtggctcg cgcctgtaat cccagcactt tgggaggccg aggtgggcgg 5041 atcacttgag gtcaggagtt tgagaccagc ctggccatca tggcgaaacc ctgtctctac 5101 taaaaataca aaaattagct gggcatggtg atgcatgcct gtaatctcag ctactaggga 5161 ggctgaggca agagaatcgc ttgaacccag gaggtggaag ttgcagcgag ctaagattgc 5221 accactgcac tctggcctgg gcgacagagc aagactcttg tctcaaaaaa aaaaaaaaaa 5281 aagaaagaaa aactaaattt aaaaatgaaa acatgaaaca tgttttccta agacttgtat 5341 ttcctaaatt ttcagctact tggtgaactc tggcattgtt cccatctcga gaagtctcat 5401 gcctttcatt tacttccttt gactgaactg gggaaaatat ctcaaaagtc ctttattgat 5461 ttgggccttt taattagcaa ttagctatcc agtctctact agaaatgatg atcaagtgtc 5521 tggaaatgca gttggtgtgg attttggatt cattccatat tctgctaatg ggatttcaga 5581 actgggataa ggaagcttgc ttctctttta ggactgatta cttaaaactt ttttcattgt 5641 agaaagtttg aagaaatata ccccccagaa gtagcagagt ttgtgtacat tacagatgat 5701 acctacacca agaaacaagt tctgagaatg gagcatctag ttttgaaagt ccttactttt 5761 gacttagctg ctccaacagt aaatcagttt cttacccaat actttctgca tcagcagcct 5821 gcaaactgca aagttgaaag tttagcaatg gtgagttaac tttcattttg ttgaatggtg 5881 attctttggt aataattagg ggtaagccct aattcctttg taaaggaacc tagttccttt 5941 gtacagcagt ggtgaagaga tttagtattc agagggagat taatgctgca gtatggaaga 6001 aagcctactg ctggcaaaag ataatctata tcaggaaagc actagaagca gaggtctaag 6061 gatgacatct tggggatggg tagtcagaag agttgttttt taaaagttaa taaaggaggg 6121 aaaatacagg atgaggatgg aacaaaacac taaaatgatt gatatgttta aagatgaggc 6181 tgtgagatat tttttctaga gttgctacag agccgttatc aaaggcagga aaaaattagg 6241 ttagaaggca gaggtttgac atttgaattc taaacgctct tgtgatcata aagtattttt 6301 tattccagtt tttgggagaa ttaagtttga tagatgctga cccatacctc aagtatttgc 6361 catcagttat tgctggagct gcctttcatt tagcactcta cacagtcacg ggacaaagct 6421 gggtatgtat tacggtcttc acacacctat cttgtgactg aaatgcctgt gccagattaa 6481 ataataattg tcctacaaaa ctgagggttg cctagatgtt cttacttgga aaaacttcaa 6541 atatatatag ttgacctttg aaaaacacag gtttgaactg tgtgagtcca cttacacatg 6601 gatttttttc caatcaaatg tggactgaaa ctacagtatt caggggattc acaacccata 6661 tatatggaag ggtgactgca ggacttgaat atgtacagat ttgggtatat ttgggaaggg 6721 tcctggaacc aatccctcat gtacactgag ggatgattat atactgttta aggcatgtta 6781 cctgttgaac agtgtttgtt aggtagtaag cttagttgta acttggattg aaaggtgagc 6841 ttttttaaaa gcatctgacc tgttgctggc agggaaagta gtagaaaatg gatcgaggga 6901 tggaataatg gcctgagaaa actagtagtt ggaaaagtta aagattagta ctggaattta 6961 acataagctt aatgccaact atttactgtg tttggtgtgt tactaaaagc aaaactcagg 7021 ggttctctat tcccttctct gtagcctgaa tcattaatac gaaagactgg atataccctg 7081 gaaagtctta agccttgtct catggacctt caccagacct acctcaaagc accacagcat 7141 gcacaacagt caataagaga aaagtacaaa aattcaaagt aagaattaac ttggatattg 7201 aagcttactt ttctagatta tggttcagag atctttgaca ttttaacctt attcatgaat 7261 ctgccatagc ctccttgaga agctgttctc taaattggtt atgtgtttga agaaggttgt 7321 agttcatgct ttctgccctg ggtctggggg agaagagaga aggaaggggg catgcatgtg 7381 tgtttcaggg accagacagt gtttctaaaa ccatcaagtc ggtcagacag aaatagcatt 7441 ttttagttcc caatacatga gtacaaacat tattccatga tctcctttac ccagtgagtg 7501 tttactaaaa atgctttttt tttccctact tacaggtatc atggtgtttc tctcctcaac 7561 ccaccagaga cactaaatct gtaacaatga aagactgcct ttgttttcta agatgtaaat 7621 cactcaaagt atatggtgta cagtttttaa cttaggtttt aattttacaa tcatttctga 7681 atacagaagt tgtggccaag tacaaattat ggtatctatt actttttaaa tggttttaat 7741 ttgtatatct tttgtatatg tatctgtctt agatatttgg ctaattttaa gtggttttgt 7801 taaagtatta atgatgccag ctgtcaggat aataaattga tttggaaaac tttgcaagtc 7861 aaatttaact tcttcaggat tttgcttagt aaagaagttt acttggttta ctatataatg 7921 ggaagtgaaa agccttcctc taaaattaaa gtaggtttag gaaaacagac cctcaaattc 7981 tgacattcat tttcctaagc aactggatca atttgctgac ttgggcataa tctaatctaa 8041 gcatatctga atacagtatt cagagataga tacagtagag attccccaga ctttttcgct 8101 ctttgtaaaa cctgtttgtt taggttttgc gaggtaaact caacagaggt tgggagtgga 8161 agagggtggg aagcttatat gcaaattaac agacgagaaa tgctccagaa ggtttattat 8221 tttaaagcac attaaaaaca aaaaactatt tttaaaatcc tgctagattt tataatggat 8281 ttgtgaataa aaaataccca gggttctcag aatggaataa atatcccttt taatagttat 8341 atatacagat atacaactgt tagctttaat tggcagctct cttctttttt cttcttttca 8401 ctggcttttt acttggtgct ttttcttgtt ttgcactggt ggtctgtgtt ctgtgaataa 8461 agcaaagtaa gaatttacta agagtatgtt aagttttgga ttattgaaat aagaggcatt 8521 tcttagtttt ccagtaggat ctaaaatgtg tcagctatga gtaagactgg catccaagaa 8581 gtttatatta tagatttagg tcctaatttt tataaatcac aaggtaaaaa aatcacagaa 8641 cagatggatc tctaatgaaa aagggatgtc tttttgttta tagtcatgtg gcaagatgag 8701 agtaaaacca gagagcaaac ctctataagt gttgagtata tgtatacatt tgaaataaac 8761 cagaaatttg ttaccttatt ttctttggat tcttgtctgg ttccaaaatg atcatttctt 8821 cttcttcact atctgagagt attatgggag catctttgtt tttttattaa tttaaaaaaa 8881 aaaaaaaaag ttaagcaatc tcttgcaaaa tttatttcta catgaattta tttctatcag 8941 acgttctaaa ctcttatttc tggggctggg cgtggtggct cacactttta atacccacat 9001 tttggtaggc tgaggcaggt ggattacctg aggtcaggaa ctcgagtcca gtctggccaa 9061 catggtgaaa ccccagctct attaaaaata atagaaaaat tagccaggcg tggtggcatg 9121 tgcttgtagg cccagctact cgaggctgag gcatgagaat cgcttgaacc catggaggtg 9181 gaggttgcag tgccactgca ctccagtctg ggtgacagag caagactcca tcccaaaaaa 9241 taaaaataaa actctaggtg gaggcttaat cttttcttta aatcagcttc ttagagcact 9301 ctagaactca tctgtaacat ttg //