CASP9 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TAAGGCACAG GTAAGTGAAG GAAACTTTCT TTGAGCCAAT GAGATAGATC
50
CCTTGCGGAT ATAAAGAGCT T
T
C
A
T
A
T
C
T
C
C
C
T
G
T
C
T
T
G
T
T
T
T
T
A
T
T
T
T
T
100 |
REPEAT
T
T
C
T
C
T
T
T
G
C
A
T
T
T
A
T
C
A
C
T
A
T
C
T
A
A
C
A
T
A
G
T
A
T
G
T
C
T
T
A
T
T
T
A
T
T
G
A
T
A
150
T
A
G
T
T
T
A
T
C
A
C
C
T
G
A
T
C
C
T
T
C
C
A
C
T
G
G
A
A
T
G
T
A
A
A
C
T
C
T
A
A
A
A
G
C
A
G
G
G
A
200
T
T
T
T
G
T
T
T
T
G
T
T
C
A
C
C
T
T
C
A
T
G
T
T
C
T
T
A
G
T
G
T
T
T
G
A
C
T
A
C
A
G
G
C
T
C
A
A
T
A
250
A
A
T
A
T
T
C
G
T
A
G
A
A
G
T
G
A
A
C
G
A
A
T
GGGGCTG AGGTTTTGGT GCTCAAGAGA
300
TTATATTCTA AGGTGGATTC
T
T
A
A
G
A
G
T
G
T
G
G
C
T
T
A
C
A
G
A
G
T
C
A
G
G
T
T
C
G
350 |
REPEAT
G
G
T
T
T
C
A
A
T
C
C
T
G
C
C
T
G
C
C
T
C
G
G
C
C
A
C
T
T
A
G
T
A
C
C
C
A
A
G
T
G
A
C
C
T
T
A
A
A
C
400
A
T
T
C
G
T
T
T
C
C
C
T
G
A
A
C
C
C
T
A
G
G
G
T
C
T
A
C
A
T
C
T
G
T
A
A
A
A
C
C
G
G
C
G
G
G
G
G
G
T
450
G
G
G
A
A
T
A
C
T
T
T
C
C
T
G
G
C
A
G
G
A
T
T
G
T
A
G
T
T
A
A
G
G
A
T
A
A
G
T
G
A
A
A
T
A
A
G
C
A
T
500
G
A
A
A
A
G
T
G
G
C
T
A
G
C
A
C
G
A
T
G
C
C
T
G
G
G
A
C
T
T
A
G
C
A
A
A
T
G
C
T
C
A
G
T
A
A
A
C
A
G
550 |
var(530):[A:0.01]
A
A
A
C
G
A
T
T
A
T
T
TTTGAAATG TGAAAATGAA CCGTTCAGAA CGATGGGAGT
600
TTACAGGACT AGATTTCTGC CGTTTTTTTT TTTTTCTGTG TGGGAGGTGT
650
TAGGGTGGGA G
A
GAGGGAAG AGGGAATGGA AGACTGTGTA AGGTGGGCTT
700 |
var(662):[G:0.48]
GGTTGGATCA GACACTCGAG TTTGGAACAG TCAACTGCGA TCTGGGCACA
750
AGGGCGGTGA GGGGAGCTTA TGGTTTTACT TGGGGTGGAG GAGGGGGCTA
800
AGGGGAAGCC ATGCCCCGGA GGAGGTTGAA TGGGCGGGAC AGATCACGGC
850
TCCACTCATG GTTTCCCTCT TGCTGGAAGT GTGACGACTC CCTCCGGATC
900
TCTGTAAAAG CGGGGCTATA GTGAATTCTG GCGAAGGGCC CGCGGTGGAC
950
CAGGAACTGG TGCCAGAATT GCAAAAGGGC ACCTGCGCC
C
GGAGTGGGGA
1000 |
var(990):[G:0.01]
GGTGATGCGG GGGCGGGGC
T
GGGCCCTGGG GGCGGGGCGA GTCGCGGAGG
1050 |
var(1020):[G:0.47]
TGCCGCCTTG GGGCGGGGCG GTGACAGAAG GATGGATCCT GGGGGTGAGG
1100
ATTGACTTTG GGGGCGGGGC GAGAGTGCGA ACTGGAGTCT GAGGCTGAGC
1150
GGTGACGCAA GGACGATTCT GAGGGTGGAG CGAGGGGAGG GGATTGGCTC
1200
TTGGAGGCGG GG
C
GGTGGCA CGAGGCTAGC CCTTGGGGGC GGGGCGGTGG
1250 |
var(1213):[T:0.01]
CGCAAGATTG ACCTTGGGGG CGGGGTGGGG GCGTGGGTTG AATCCTGGGG
1300
GCGGGGCGGT GGCGCGGAAT GGATTCTGGG GTCGGCGCGA GGCGCTGAGG
1350
TGCGTCCTGA GGGCGGGGCG ATGACGCAGA GCGAATCCTG GGGGCGGGGC
1400
GAGACCTTCT AGATGCGTCC CGGGGAGTGG GCGGTGACGC GGTGGCAGGT
1450
TCTGGGGACA GGCGGTGACC CCAGAATTGA CCCTGGGGAC AGGGCGAGGC
1500
GCGGAGGCGT CCTGAAGGCG AGGCGGTGAC GCAAGAGCGA ATCCTTGGGG
1550
CGGGGCGAGG CGTTGGAGAT GCGTCCTGCG GGCGGGACGG TAACGCGGGG
1600
GCGGGGCGGT GACGTGAGGT CAGTGCGGGG A
C
G
T
G
A
G
G
T
C
A
G
T
G
C
G
G
G
G
A
1650 |
var(1632):[-:0.46]
TACGGGGCGG GTTCTGGGGC GGGGACGCAG TGGTGGATTC TGGAGCGGGG
1700
CGGTGACGTG GGGCGGGTTC TGGGGCGGGG CGGTGACGCG GAGCGTGTTC
1750
TGGGGCGG
C
G
C
G
G
T
G
A
T
G
G
G
A
G
G
C
T
T
G
G
C
C
C
T
G
G
G
G
G
C
G
G
G
G
C
G
A
G
G
C
G
C
1800 |
NOT SCANNED
A
G
A
G
G
T
G
C
G
T
C
C
T
G
A
G
G
G
C
G
G
G
G
C
G
G
T
G
A
C
G
C
A
A
G
A
G
C
G
A
C
T
C
C
T
G
G
G
G
G
1850
C
G
G
G
G
C
G
A
G
G
C
C
T
T
G
G
A
G
A
T
G
C
G
T
C
C
G
G
A
G
G
C
G
G
TGGGGA GCGAAGACTG
1900
ACCCGGGGCC GTGACGCGGG GGCA
G
G
C
C
C
T
G
G
G
G
C
G
G
G
G
G
C
G
G
G
T
C
C
T
G
G
1950 | Exon 1 |
UTR
G
G
A
C
T
G
G
G
G
C
G
G
G
C
G
G
C
C
G
A
G
G
C
C
C
G
G
A
A
G
C
G
G
A
C
T
G
A
G
G
C
G
G
C
C
T
G
G
A
G
2000
T
C
T
T
A
G
T
T
G
G
C
T
A
C
T
C
G
C
C
A
T
G
G
A
C
G
A
A
G
C
G
G
A
T
C
G
G
C
G
G
C
T
C
C
T
G
C
G
G
C
2050
M D E A D R R L L R 10
G
G
T
G
C
C
G
G
C
T
G
C
G
G
C
T
G
G
T
G
G
A
A
G
A
G
C
T
G
C
A
G
G
T
G
G
A
C
C
A
G
C
T
C
T
G
G
G
A
C
2100
R C R L R L V E E L Q V D Q L W D 27
G
T
C
C
T
G
C
T
G
A
G
C
C
G
C
G
A
G
C
T
G
T
T
C
A
G
G
C
C
C
C
A
T
A
T
G
A
T
C
G
A
G
G
A
C
A
T
C
C
A
2150 |
var(2102):[C:0.49]
|
var(2112):[T:0.12]
V L L S R E L F R P H M I E D I Q 44
G
GTGCGCCCC C
C
G
C
C
C
C
C
GG CCCCCTGTCC CCGCGCTGCA CGGCCGGGTC
2200 |
var(2162):[-:0.58]
44
CCCACGCCCC TCGAGGAGGC GTTGTGCGGG AGCCTAGC
C
T TCCCTGTGGC
2250 |
var(2239):[T:0.47]
TTCAAACCCC TCAGCGGAGC CAAAGAATCC CAAACACCTC TTAGTCGGGT
2300
GTTCGCTAAA GCGATTCCAT GCCATACTCA G
T
C
A
G
CGTAC ACTGTTAGTG
2350 |
var(2332):[-:0.21]
CTTGTGTTTC TTGTGT
A
AA
G
GAAAAATG
T
G AGACACATCT TGAGAAC
T
T
T
2400 |
var(2367):[G:0.01]
|
var(2370):[A:0.03]
|
var(2379):[C:0.33]
|
REPEAT
G
A
A
T
A
A
G
A
A
A
C
A
A
T
T
C
A
T
G
A
A
T
T
G
G
A
G
A
A
C
A
T
C
A
G
A
C
T
G
A
A
A
G
A
G
C
T
T
T
A
2450
G
T
G
T
T
G
C
A
A
T
G
A
C
A
A
A
A
C
G
T
C
A
G
A
G
G
C
A
A
G
T
A
T
T
T
A
T
T
G
G
G
A
A
A
A
T
G
T
G
G
2500
A
A
G
C
A
A
A
A
T
A
A
A
G
A
A
A
T
T
A
T
T
T
G
A
T
T
G
G
T
T
T
G
C
A
G
T
T
A
C
A
A
A
A
T
T
G
C
C
T
T
2550
T
T
T
T
T
T
T
T
A
A
G
G
T
C
T
G
T
T
A
A
T
T
G
A
C
T
G
C
T
T
T
T
G
G
C
T
G
G
T
C
T
T
A
A
G
T
T
T
T
A
2600 |
NOT SCANNED
T
T
T
C
T
C
T
C
T
A
A
C
A
T
A
A
G
C
A
T
T
T
A
T
C
A
G
A
T
A
T
G
A
C
C
C
A
A
G
T
T
A
A
A
T
T
T
T
G
C
2650
T
T
A
T
G
T
T
T
G
C
A
G
T
T
T
A
A
G
C
A
A
G
A
T
T
T
A
G
G
T
C
A
C
T
T
A
G
G
A
T
A
C
C
T
G
A
T
T
G
G
2700
T
T
T
T
G
T
C
T
G
C
T
C
A
G
G
A
A
T
T
C
T
T
C
A
T
G
G
T
T
G
G
T
C
T
C
C
A
T
T
T
T
A
A
T
T
T
A
C
G
T
2750
T
A
A
T
A
C
T
T
G
C
G
A
G
G
A
A
G
G
A
G
G
C
G
T
G
T
G
C
G
T
T
T
T
T
A
C
T
T
T
T
C
T
A
G
C
A
T
A
G
A
2800
G
G
T
T
T
C
G
G
G
A
A
C
C
C
A
C
TTTG GCATCAGGCT GC
C
T
G
G
C
A
G
C
G
T
G
T
T
C
T
T
G
G
2850 |
REPEAT
G
C
C
A
G
T
C
A
C
T
T
A
C
C
C
T
C
T
T
T
G
A
G
C
C
A
C
A
G
T
T
T
C
T
G
G
G
C
T
G
T
G
A
A
A
T
G
G
G
A
2900 |
var(2867):[A:0.32]
A
T
A
A
G
A
A
T
A
A
T
A
C
T
G
T
C
A
T
A
A
G
G
A
C
T
A
A
A
T
G
A
A
A
T
A
A
C
G
G
A
T
G
T
G
A
A
A
C
T
2950
G
T
AGTGCTAG GCACAGAGCG GGG
G
ATCAG
C
GTACCCTGCC CTCTTTGGCC
3000 |
var(2952):[C:0.01]
|
var(2974):[T:0.01]
|
var(2980):[A:0.17]
AGCCCCTTCT GTGTTCAGTT T
A
TGTTTTGT TAAGAGGTTT TGGAAATGAG
3050 |
var(3022):[T:0.32]
GGGACCTGAT GCAGAATGGA GAATAAT
A
AA GTCAAACATT TGAGGTTTTG
3100 |
var(3078):[G:0.48]
TTTAAAAGCA CTTTCCCATC TTTGTCTCAT TTGACCCTCA TCACAGGCCT
3150
GTGAGGATGC AGGAGATATT TCCTACCATG AGGTGCAGTA GGTGTGAGTG
3200
GCTGGCTGGA TATCCCTGGC CAGTGCCCTG GCCCAGGGAA AGAGTCTTTA
3250
AATAATTGAG TATCATATGA GTAATTATTC ATTAATAATA AAATAAGTTT
3300
TGTGCCTTCT GTGTGGCCCC TACTGGGGAA CAGTAATGGT TTGAGGCCAC
3350
AGTCCTTGCC TTCAGGAATG TTCACGGGGA TCACAAACTC AAATGCCCAT
3400
GGAGGACCAA TGGATGGGCG TCATAGTGGA TAGCCTTTGC ACTGCCCTCC
3450
GT
C
T
C
C
A
G
C
T
G
A
G
T
A
T
G
G
C
C
A
T
A
T
C
A
A
C
A
A
A
T
G
G
C
C
C
A
G
T
A
T
T
G
C
C
A
C
A
T
3500 |
REPEAT
C
T
T
A
C
A
C
T
T
A
T
T
T
T
G
A
G
G
C
A
G
G
G
T
C
T
C
A
C
T
C
T
T
G
C
C
C
A
G
C
C
T
G
G
A
G
T
G
C
A
3550 |
var(3503):[C:0.01]
|
REPEAT
|
var(3541):[T:0.01]
G
G
G
A
T
G
A
G
A
T
C
A
T
G
G
C
T
C
A
C
T
G
C
G
A
C
C
T
T
G
A
C
C
T
C
C
T
G
G
G
C
T
T
A
A
G
T
G
G
T
3600
C
T
T
C
C
T
G
C
C
T
C
A
G
C
C
T
T
T
A
G
A
G
C
A
G
C
T
G
G
G
A
C
T
T
T
A
G
G
C
A
C
A
T
G
C
C
A
C
C
A
3650
T
G
C
C
T
G
G
C
T
A
A
T
T
A
A
A
A
A
A
A
A
T
T
T
T
T
T
T
T
T
T
G
T
A
C
A
G
A
T
A
G
G
A
G
T
C
T
T
G
C
3700
T
A
T
G
T
T
G
C
C
T
A
G
A
T
G
A
G
T
C
T
C
A
A
A
C
T
C
T
T
G
G
C
C
T
C
A
A
G
T
G
A
T
T
C
T
C
C
T
G
C
3750 |
var(3719):[G:0.03]
C
T
C
A
G
T
G
T
T
G
G
G
A
T
T
A
C
A
G
G
T
G
T
G
A
G
C
C
A
C
T
G
T
A
C
C
C
G
G
C
C
C
A
G
C
T
T
T
C
A
3800 |
REPEAT
C
A
T
C
T
T
A
A
A
A
A
A
G
A
A
G
C
T
G
A
A
A
A
T
C
T
T
G
A
T
T
C
C
T
C
T
G
T
C
A
A
A
T
T
C
C
C
T
G
G
3850 |
var(3833):[T:0.01]
C
T
T
A
A
A
A
T
G
T
T
A
G
C
A
A
C
A
A
A
T
T
C
A
G
A
A
A
T
T
T
T
T
T
A
A
G
A
A
C
C
T
T
G
T
G
G
G
A
A
3900
C
C
A
CAGGTTG CCATTTTGCC ATT
C
A
G
T
A
T
G
G
C
T
G
A
A
A
A
A
C
A
G
G
C
A
G
G
T
T
T
3950 |
REPEAT
T
G
G
A
A
C
C
A
G
T
T
G
G
A
T
C
T
G
G
G
C
T
C
T
C
A
T
C
C
T
G
G
C
C
T
T
G
T
T
A
C
A
T
A
T
T
A
G
C
A
4000 |
var(3980):[G:0.01]
AGTTGTAAAA AACCACAACC AATGA
A
CCAA ACAAACAGAA AAACCCTATG
4050 |
var(4026):[G:0.46]
ACTCAGTTTC CCTGAAATTT TTTACCCTAA AAAGTTGGGA AGTTCTAATT
4100
TAACTCTATA AAGTTATTGA GGGAGAAAAA GATGAAACAA TGCATTTAAC
4150
ACAGTGTTGA CCTCCTGGAG TGTTCAGCAA ATGTGGAGAG AAACCTAAAC
4200
ACC
A
C
C
A
T
C
T
A
T
T
T
G
C
A
T
G
T
A
G
C
C
A
A
C
T
G
T
T
C
T
G
C
T
A
G
T
G
A
G
A
C
T
T
A
C
C
T
4250 |
NOT SCANNED
T
C
T
C
A
G
T
G
G
C
A
C
T
G
T
A
G
G
T
C
T
G
T
G
C
T
G
T
T
C
C
C
A
A
C
A
G
T
A
G
C
C
A
T
T
A
G
C
C
A
4300 |
REPEAT
C
A
T
G
T
C
G
T
T
A
A
A
G
G
T
A
A
A
T
T
T
G
A
A
G
T
A
A
T
T
A
A
A
A
T
T
A
A
A
T
A
A
A
A
C
T
A
A
A
A
4350
A
T
T
G
G
T
A
G
G
G
T
C
A
A
G
C
C
T
T
A
C
A
G
G
G
C
C
T
G
T
G
G
G
T
T
T
T
T
C
T
C
C
T
C
G
T
G
T
G
C
4400 |
REPEAT
G
G
A
G
A
T
G
A
G
A
G
A
T
C
G
T
A
G
A
A
A
T
A
A
A
G
A
C
A
C
A
G
G
A
G
A
A
A
G
A
G
A
T
A
G
A
A
A
A
A
4450
A
A
G
A
C
A
G
C
T
G
G
G
C
C
C
G
G
G
G
G
A
C
C
A
C
T
A
C
C
A
C
C
T
A
G
A
C
G
T
G
G
A
G
A
C
A
G
G
G
T
4500
A
G
T
G
G
C
C
C
C
G
A
A
T
G
C
C
T
G
G
C
T
G
C
G
C
T
G
T
T
A
T
T
G
G
A
T
A
T
A
A
G
G
C
A
A
G
G
G
G
A
4550
C
A
G
G
G
T
A
A
G
G
A
G
G
G
T
G
A
A
T
C
T
T
C
T
A
A
G
T
G
A
T
T
G
A
T
A
A
G
G
T
G
A
A
G
C
A
A
G
T
C
4600
A
C
G
T
G
A
T
C
A
T
A
G
G
A
C
A
G
G
G
G
G
C
C
C
T
T
C
C
C
T
T
T
T
A
G
G
T
A
G
C
T
G
A
A
G
C
A
G
A
G
4650
A
G
A
G
A
A
G
G
C
A
G
C
A
T
A
T
G
T
C
A
G
C
G
T
T
T
T
C
T
T
C
T
A
T
G
C
A
C
T
T
A
T
A
A
G
A
A
A
G
A
4700
T
C
A
A
A
G
A
C
T
T
T
A
A
G
A
C
T
T
T
C
A
C
T
A
T
T
T
C
T
T
C
T
A
C
C
G
C
T
A
T
C
T
A
T
G
A
A
C
T
T
4750
C
A
A
A
C
A
G
G
A
A
C
C
A
G
G
A
G
T
A
C
G
G
G
A
G
G
A
A
C
A
T
G
A
A
A
G
T
G
G
G
C
A
A
G
G
A
G
C
G
T
4800
G
A
C
C
A
T
G
G
A
A
G
C
A
C
A
G
C
A
C
C
A
C
A
G
G
G
A