Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000148 00000 ------------ T 0.75 0.77 1.00 1.00 1.00 0.94 C 0.25 0.23 0.00 0.00 0.00 0.06 0000 --- --- --- --- 000282 00000 ------------ C 0.45 0.45 0.75 0.74 0.72 0.67 T 0.55 0.55 0.25 0.26 0.28 0.33 0000 --- --- --- --- 000292 00000 ------------ G 0.75 0.77 1.00 1.00 1.00 0.94 A 0.25 0.23 0.00 0.00 0.00 0.06 0000 --- --- --- --- 000594 00000 ------------ G 0.90 0.92 1.00 1.00 1.00 0.97 T 0.10 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 000598 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000622 00001 5' UTR T 0.77 0.79 1.00 1.00 1.00 0.94 C 0.23 0.21 0.00 0.00 0.00 0.06 0000 --- --- --- --- 000664 00043 NON-SYN A 1.00 1.00 0.95 0.98 1.00 0.98 T 0.00 0.00 0.05 0.02 0.00 0.02 0003 AAA AAT LYS(K) ASN(N) 000694 00073 NON-SYN C 0.75 0.79 1.00 1.00 1.00 0.94 G 0.25 0.21 0.00 0.00 0.00 0.06 0013 TTC TTG PHE(F) LEU(L) 000848 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001009 00000 ------------ G 0.75 0.79 1.00 1.00 1.00 0.94 A 0.25 0.21 0.00 0.00 0.00 0.06 0000 --- --- --- --- 001076 00000 ------------ C 0.75 0.79 1.00 1.00 1.00 0.94 T 0.25 0.21 0.00 0.00 0.00 0.06 0000 --- --- --- --- 001141 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001156 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001935 00000 ------------ A 0.81 0.73 1.00 1.00 1.00 0.94 T 0.19 0.27 0.00 0.00 0.00 0.06 0000 --- --- --- --- 001969 00000 ------------ A 1.00 0.95 0.98 1.00 0.98 0.98 G 0.00 0.05 0.02 0.00 0.02 0.02 0000 --- --- --- --- 001975 00000 ------------ G 0.81 0.73 1.00 1.00 1.00 0.94 A 0.19 0.27 0.00 0.00 0.00 0.06 0000 --- --- --- --- 002303 00210 NON-SYN T 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0059 CTG CGG LEU(L) ARG(R) 002395 00302 NON-SYN A 0.39 0.46 0.64 0.50 0.71 0.56 G 0.61 0.54 0.36 0.50 0.29 0.44 0090 ACC GCC THR(T) ALA(A) 002519 00000 ------------ T 0.43 0.46 0.75 0.75 0.69 0.65 C 0.57 0.54 0.25 0.25 0.31 0.35 0000 --- --- --- --- 002605 00000 ------------ G 0.43 0.46 0.75 0.75 0.71 0.65 C 0.57 0.54 0.25 0.25 0.29 0.35 0000 --- --- --- --- 002780 00000 ------------ C 0.75 0.79 1.00 1.00 1.00 0.93 T 0.25 0.21 0.00 0.00 0.00 0.07 0000 --- --- --- --- 003021 00000 ------------ T 0.88 0.92 1.00 1.00 1.00 0.97 C 0.12 0.08 0.00 0.00 0.00 0.03 0000 --- --- --- --- 003083 00000 ------------ T 0.73 0.79 1.00 1.00 1.00 0.94 C 0.27 0.21 0.00 0.00 0.00 0.06 0000 --- --- --- --- 003275 00000 ------------ C 0.73 0.79 1.00 1.00 1.00 0.94 T 0.27 0.21 0.00 0.00 0.00 0.06 0000 --- --- --- --- 003598 00000 ------------ A 0.96 0.92 0.95 0.98 1.00 0.97 T 0.04 0.08 0.05 0.02 0.00 0.03 0000 --- --- --- --- 003633 00000 ------------ - 0.17 0.12 0.00 0.00 0.00 0.04 + 0.83 0.88 1.00 1.00 1.00 0.96 0000 --- --- --- --- 003685 00000 ------------ C 0.96 0.92 0.95 0.98 1.00 0.97 T 0.04 0.08 0.05 0.02 0.00 0.03 0000 --- --- --- --- 004575 00000 ------------ A 0.93 0.92 0.95 0.98 1.00 0.96 G 0.07 0.08 0.05 0.02 0.00 0.04 0000 --- --- --- --- 004796 00000 ------------ T 0.86 0.88 1.00 1.00 1.00 0.96 C 0.14 0.12 0.00 0.00 0.00 0.04 0000 --- --- --- --- 005312 00000 ------------ G 0.75 0.79 1.00 1.00 1.00 0.94 A 0.25 0.21 0.00 0.00 0.00 0.06 0000 --- --- --- --- 005353 00000 ------------ C 1.00 1.00 0.98 0.95 1.00 0.98 T 0.00 0.00 0.02 0.05 0.00 0.02 0000 --- --- --- --- 005496 00000 ------------ T 0.89 0.92 0.91 0.95 0.90 0.91 G 0.11 0.08 0.09 0.05 0.10 0.09 0000 --- --- --- --- 005565 00000 ------------ C 0.86 0.83 0.91 0.93 0.92 0.90 T 0.14 0.17 0.09 0.07 0.08 0.10 0000 --- --- --- --- 005841 00000 ------------ C 1.00 1.00 1.00 0.95 1.00 0.99 G 0.00 0.00 0.00 0.05 0.00 0.01 0000 --- --- --- --- 005891 00000 ------------ C 0.80 0.79 1.00 1.00 1.00 0.95 T 0.20 0.21 0.00 0.00 0.00 0.05 0000 --- --- --- --- 006143 00000 ------------ - 0.59 0.55 0.95 0.97 0.89 0.84 + 0.41 0.45 0.05 0.03 0.11 0.16 0000 --- --- --- --- 006283 00489 NON-SYN G 0.90 0.89 1.00 1.00 1.00 0.98 A 0.10 0.11 0.00 0.00 0.00 0.02 0152 CGT CAT ARG(R) HIS(H) 006566 00000 ------------ A 0.82 0.88 0.98 1.00 0.90 0.93 T 0.18 0.12 0.02 0.00 0.10 0.07 0000 --- --- --- --- 006774 00000 ------------ T 0.90 1.00 0.88 0.87 1.00 0.93 A 0.10 0.00 0.12 0.13 0.00 0.07 0000 --- --- --- --- 006829 00000 ------------ - 0.05 0.00 0.07 0.03 0.00 0.03 + 0.95 1.00 0.93 0.97 1.00 0.97 0000 --- --- --- --- 007501 00635 NON-SYN G 1.00 0.79 1.00 0.95 1.00 0.96 C 0.00 0.21 0.00 0.05 0.00 0.04 0201 GTG CTG VAL(V) LEU(L) 007687 00000 ------------ - 1.00 0.82 1.00 0.95 1.00 0.97 + 0.00 0.18 0.00 0.05 0.00 0.03 0000 --- --- --- --- 007808 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 008066 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008141* 008653 00000 ------------ C 1.00 0.77 1.00 0.95 1.00 0.96 G 0.00 0.23 0.00 0.05 0.00 0.04 0000 --- --- --- --- 008707 00000 ------------ T 1.00 0.77 1.00 0.95 1.00 0.96 C 0.00 0.23 0.00 0.05 0.00 0.04 0000 --- --- --- --- 008826 00000 ------------ A 0.93 0.86 1.00 1.00 0.96 0.96 T 0.07 0.14 0.00 0.00 0.04 0.04 0000 --- --- --- --- 008908 00000 ------------ T 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008944 00000 ------------ A 1.00 0.95 1.00 1.00 1.00 0.99 C 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009008 00000 ------------ C 0.83 0.91 0.90 0.95 1.00 0.93 T 0.17 0.09 0.10 0.05 0.00 0.07 0000 --- --- --- --- 009137 00733 SYNON T 0.82 0.86 1.00 1.00 1.00 0.96 C 0.18 0.14 0.00 0.00 0.00 0.04 0233 GCT GCC ALA(A) ALA(A) 009283 00879 NON-SYN G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0282 CGC CAC ARG(R) HIS(H) 009385 00000 ------------ G 0.86 0.92 0.90 0.95 1.00 0.94 A 0.14 0.08 0.10 0.05 0.00 0.06 0000 --- --- --- --- 009468 00000 ------------ A 0.96 0.96 1.00 1.00 1.00 0.99 T 0.04 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009728 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 009810 00000 ------------ C 1.00 1.00 1.00 0.95 1.00 0.99 T 0.00 0.00 0.00 0.05 0.00 0.01 0000 --- --- --- --- 010199 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010374 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010386 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010622 00986 NON-SYN G 0.43 0.58 0.57 0.25 0.75 0.52 C 0.57 0.42 0.43 0.75 0.25 0.48 0318 GTC CTC VAL(V) LEU(L) 010679 01043 NON-SYN G 0.93 1.00 1.00 0.98 1.00 0.98 A 0.07 0.00 0.00 0.02 0.00 0.02 0337 GAG AAG GLU(E) LYS(K) 010748 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 010889 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 010897 00000 ------------ C 1.00 0.80 1.00 0.95 1.00 0.97 T 0.00 0.20 0.00 0.05 0.00 0.03 0000 --- --- --- --- 011070 00000 ------------ T 0.85 0.95 0.91 0.91 1.00 0.93 C 0.15 0.05 0.09 0.09 0.00 0.07 0000 --- --- --- --- 011099 00000 ------------ T 0.69 0.65 0.66 0.36 0.75 0.62 C 0.31 0.35 0.34 0.64 0.25 0.38 0000 --- --- --- --- 011230 00000 ------------ C 0.92 0.82 1.00 1.00 0.96 0.96 G 0.08 0.18 0.00 0.00 0.04 0.04 0000 --- --- --- --- 011249 00000 ------------ G 1.00 0.86 1.00 1.00 0.96 0.97 A 0.00 0.14 0.00 0.00 0.04 0.03 0000 --- --- --- --- 011267 00000 ------------ G 0.96 0.95 1.00 1.00 1.00 0.99 A 0.04 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011297 00000 ------------ C 0.96 1.00 1.00 0.98 1.00 0.99 T 0.04 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 011422 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 011468 00000 ------------ A 1.00 0.88 1.00 1.00 0.96 0.97 T 0.00 0.12 0.00 0.00 0.04 0.03 0000 --- --- --- --- 011522 00000 ------------ G 0.93 0.83 1.00 1.00 0.96 0.96 A 0.07 0.17 0.00 0.00 0.04 0.04 0000 --- --- --- --- 011566 00000 ------------ T 0.93 1.00 1.00 0.97 1.00 0.98 C 0.07 0.00 0.00 0.03 0.00 0.02 0000 --- --- --- --- 011669 00000 ------------ A 0.93 0.88 0.67 0.40 0.74 0.69 T 0.07 0.12 0.33 0.60 0.26 0.31 0000 --- --- --- --- 011757 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 011802 00000 ------------ G 1.00 0.79 1.00 0.95 1.00 0.96 C 0.00 0.21 0.00 0.05 0.00 0.04 0000 --- --- --- --- 012096 00000 ------------ G 0.95 0.96 1.00 1.00 1.00 0.99 A 0.05 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012112 01084 SYNON T 1.00 0.96 1.00 0.95 1.00 0.98 C 0.00 0.04 0.00 0.05 0.00 0.02 0350 CAT CAC HIS(H) HIS(H) 012158 01130 NON-SYN G 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0366 GAA CAA GLU(E) GLN(Q) 012496 00000 ------------ A 1.00 0.82 1.00 1.00 1.00 0.98 G 0.00 0.18 0.00 0.00 0.00 0.02 0000 --- --- --- --- 012539 00000 ------------ G 1.00 0.77 1.00 0.95 1.00 0.96 A 0.00 0.23 0.00 0.05 0.00 0.04 0000 --- --- --- --- 012699 00000 ------------ A 0.97 0.95 1.00 1.00 1.00 0.99 G 0.03 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012727 00000 ------------ A 1.00 0.75 1.00 0.95 1.00 0.96 G 0.00 0.25 0.00 0.05 0.00 0.04 0000 --- --- --- --- 013384 00000 ------------ A 1.00 0.79 1.00 0.95 1.00 0.96 G 0.00 0.21 0.00 0.05 0.00 0.04 0000 --- --- --- --- 013443 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 013460 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013512 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 013587 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 013722 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 013869 00000 ------------ T 0.80 1.00 0.43 0.80 0.32 0.62 A 0.20 0.00 0.57 0.20 0.68 0.38 0000 --- --- --- --- 013913 00000 ------------ G 1.00 0.77 1.00 0.95 1.00 0.96 A 0.00 0.23 0.00 0.05 0.00 0.04 0000 --- --- --- --- 013946 00000 ------------ T 0.87 0.95 0.91 0.91 1.00 0.93 A 0.13 0.05 0.09 0.09 0.00 0.07 0000 --- --- --- --- 014284 00000 ------------ G 0.67 0.77 0.43 0.80 0.27 0.56 A 0.33 0.23 0.57 0.20 0.73 0.44 0000 --- --- --- --- 014321 00000 ------------ C 1.00 1.00 1.00 0.84 1.00 0.96 A 0.00 0.00 0.00 0.16 0.00 0.04 0000 --- --- --- --- 014379 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014551 00000 ------------ - 0.07 0.14 0.00 0.00 0.04 0.04 + 0.93 0.86 1.00 1.00 0.96 0.96 0000 --- --- --- --- 014711 00000 ------------ G 0.97 0.96 1.00 1.00 1.00 0.99 A 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014872 00000 ------------ C 0.92 0.83 1.00 1.00 0.96 0.96 G 0.08 0.17 0.00 0.00 0.04 0.04 0000 --- --- --- --- 014874 00000 ------------ G 1.00 0.79 1.00 0.95 1.00 0.96 T 0.00 0.21 0.00 0.05 0.00 0.04 0000 --- --- --- --- 014892 00000 ------------ A 1.00 0.88 1.00 1.00 0.96 0.97 G 0.00 0.12 0.00 0.00 0.04 0.03 0000 --- --- --- --- 014940 00000 ------------ A 1.00 1.00 0.93 1.00 1.00 0.98 G 0.00 0.00 0.07 0.00 0.00 0.02 0000 --- --- --- --- 014955 00000 ------------ - 0.00 0.04 0.00 0.00 0.00 0.01 + 1.00 0.96 1.00 1.00 1.00 0.99 0000 --- --- --- --- 015161 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 015364 00000 ------------ T 1.00 0.92 1.00 1.00 0.95 0.98 A 0.00 0.08 0.00 0.00 0.05 0.02 0000 --- --- --- --- 015435 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 015445 00000 ------------ G 0.85 0.92 0.93 0.91 1.00 0.93 T 0.15 0.08 0.07 0.09 0.00 0.07 0000 --- --- --- --- 015579 00000 ------------ C 1.00 0.79 1.00 0.95 1.00 0.96 G 0.00 0.21 0.00 0.05 0.00 0.04 0000 --- --- --- --- 016781 00000 ------------ C 0.30 0.59 0.57 0.25 0.76 0.54 T 0.70 0.41 0.43 0.75 0.24 0.46 0000 --- --- --- --- 016793 00000 ------------ T 1.00 0.79 1.00 0.95 1.00 0.96 C 0.00 0.21 0.00 0.05 0.00 0.04 0000 --- --- --- --- 016802 00000 ------------ G 1.00 0.92 1.00 1.00 0.96 0.98 A 0.00 0.08 0.00 0.00 0.04 0.02 0000 --- --- --- --- 016927 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 017276 00000 ------------ A 1.00 1.00 1.00 1.00 0.90 0.97 G 0.00 0.00 0.00 0.00 0.10 0.03 0000 --- --- --- --- 017296 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 003633: A 006143: TC 006829: TTTTTT 007687: CGTGTG 014551: C 014955: CA The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele3 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq 008141 A 0.11 0.21 0.00 0.00 0.02 0.05 C 0.11 0.17 0.00 0.00 0.02 0.04 G 0.79 0.62 1.00 1.00 0.95 0.91