Site Genotype1 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype2 AD-pop ED-pop HD-pop XD-pop Total-pop Genotype3 AD-pop ED-pop HD-pop XD-pop Total-pop AD-chi2 ED-chi2 HD-chi2 XD-chi2 Total-chi2 000297 CC 13 19 20 23 75 CG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.013 0.000 0.000 0.003 000552 AA 0 0 0 0 0 AG 0 3 0 0 3 GG 13 17 18 22 70 0.000 0.131 0.000 0.000 0.032 000595 -- 11 20 17 22 70 +- 2 0 1 0 3 ++ 0 0 0 0 0 0.090 0.000 0.015 0.000 0.032 000730 GG 1 0 0 1 2 GT 4 2 1 2 9 TT 15 17 19 17 68 0.930 0.059 0.013 3.951 4.766 000822 AA 0 0 0 0 0 AG 1 7 2 0 10 GG 19 12 18 20 69 0.013 0.969 0.055 0.000 0.361 001018 AA 26 22 22 23 93 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 001104 GG 26 22 22 22 92 GT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 001370 AA 25 22 22 24 93 AG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 001462 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 001464 AA 17 14 19 20 70 AG 10 8 3 4 25 GG 0 0 0 0 0 1.395 1.086 0.118 0.198 2.181 001490 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 001768 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 25 21 22 24 92 0.000 0.012 0.000 0.000 0.003 001801 CC 21 22 22 24 89 CT 2 0 0 0 2 TT 0 0 0 0 0 0.048 0.000 0.000 0.000 0.011 001828 CC 20 22 22 24 88 CT 1 0 0 0 1 TT 0 0 0 0 0 0.012 0.000 0.000 0.000 0.003 001890 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 21 21 22 22 86 0.000 0.012 0.000 0.000 0.003 002044 CC 19 22 21 23 85 CT 1 0 1 0 2 TT 0 0 0 0 0 0.013 0.000 0.012 0.000 0.012 002058 AA 24 22 22 20 88 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.012 0.003 002361 CC 27 22 21 24 94 CG 0 0 1 0 1 GG 0 0 0 0 0 0.000 0.000 0.012 0.000 0.003 002426 CC 25 22 21 24 92 CG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 002854 AA 0 0 0 0 0 AC 2 1 0 0 3 CC 23 18 22 21 84 0.043 0.014 0.000 0.000 0.027 002936 CC 0 0 0 0 0 CT 0 1 0 0 1 TT 25 18 22 21 86 0.000 0.014 0.000 0.000 0.003 076727 AA 24 22 22 23 91 AG 3 0 0 0 3 GG 0 0 0 0 0 0.093 0.000 0.000 0.000 0.025 076761 AA 26 22 22 23 93 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 076942 -- 26 20 17 23 86 +- 0 2 3 0 5 ++ 0 0 0 0 0 0.000 0.050 0.131 0.000 0.073 091478 CC 25 21 22 24 92 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 091505 CC 0 0 0 0 0 CT 3 0 0 0 3 TT 23 21 22 24 90 0.097 0.000 0.000 0.000 0.025 091748 AA 25 21 22 24 92 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 091865 CC 26 21 22 24 93 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 092236 AA 23 22 22 24 91 AG 3 0 0 0 3 GG 0 0 0 0 0 0.097 0.000 0.000 0.000 0.025 092302 AA 6 4 1 1 12 AG 14 9 3 7 33 GG 6 9 18 15 48 0.154 0.414 2.296 0.025 2.539 092403 CC 25 22 22 23 92 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 117602 AA 17 10 19 20 66 AC 9 12 3 4 28 CC 0 0 0 0 0 1.139 3.094 0.118 0.198 2.879 118281 AA 0 0 0 0 0 AC 0 0 1 0 1 CC 24 21 19 24 88 0.000 0.000 0.013 0.000 0.003 118632 AA 0 0 0 0 0 AT 1 7 2 4 14 TT 25 14 19 19 77 0.010 0.840 0.053 0.209 0.632 119023 AA 0 0 0 0 0 AT 0 0 2 0 2 TT 26 21 20 24 91 0.000 0.000 0.050 0.000 0.011 125148 AA 0 0 0 0 0 AG 1 0 1 0 2 GG 25 22 21 24 92 0.010 0.000 0.012 0.000 0.011 125169 AA 0 0 0 0 0 AT 2 0 0 0 2 TT 24 22 22 24 92 0.042 0.000 0.000 0.000 0.011 126024 -- 0 0 0 0 0 +- 0 1 0 0 1 ++ 26 20 22 24 92 0.000 0.012 0.000 0.000 0.003 126118 AA 26 22 14 15 77 AT 0 0 8 9 17 TT 0 0 0 0 0 0.000 0.000 1.086 1.278 0.929 126234 AA 23 22 22 24 91 AG 3 0 0 0 3 GG 0 0 0 0 0 0.097 0.000 0.000 0.000 0.025 126434 AA 0 0 0 0 0 AG 1 6 2 4 13 GG 25 15 20 20 80 0.010 0.583 0.050 0.198 0.525 126890 AA 0 0 0 0 0 AC 0 0 0 1 1 CC 25 22 22 23 92 0.000 0.000 0.000 0.011 0.003 132102 AA 27 21 22 24 94 AC 0 1 0 0 1 CC 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 138691 AA 0 0 0 0 0 AG 0 0 0 2 2 GG 25 22 22 22 91 0.000 0.000 0.000 0.045 0.011 138720 CC 25 22 22 23 92 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 139166 CC 26 22 22 24 94 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 139269 GG 0 0 0 0 0 GT 0 0 0 1 1 TT 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 139367 AA 9 1 1 1 12 AG 16 7 3 7 33 GG 2 14 18 16 50 1.977 0.011 2.296 0.044 2.841 139379 CC 26 22 22 24 94 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 139490 AA 0 1 0 0 1 AG 0 6 2 4 12 GG 25 12 20 19 76 0.000 0.048 0.050 0.209 0.432 139512 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 25 18 22 22 87 0.000 0.014 0.000 0.000 0.003 139552 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 24 19 22 22 87 0.010 0.000 0.000 0.000 0.003 143169 AA 6 9 15 15 45 AG 14 9 4 7 34 GG 4 4 1 1 10 0.734 0.414 0.930 0.025 0.823 143238 AA 22 22 20 23 87 AT 2 0 0 0 2 TT 0 0 0 0 0 0.045 0.000 0.000 0.000 0.011 143338 AA 0 0 0 0 0 AT 8 5 1 0 14 TT 16 17 19 23 75 0.960 0.362 0.013 0.000 0.649 143460 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 25 21 22 23 91 0.000 0.012 0.000 0.000 0.003 143463 CC 25 21 22 24 92 CG 0 1 0 0 1 GG 0 0 0 0 0 0.000 0.012 0.000 0.000 0.003 143508 CC 26 20 22 24 92 CG 0 2 0 0 2 GG 0 0 0 0 0 0.000 0.050 0.000 0.000 0.011 143532 CC 0 0 0 0 0 CT 4 0 1 0 5 TT 22 22 21 24 89 0.181 0.000 0.012 0.000 0.070 143901 CC 0 0 0 0 0 CG 1 0 0 0 1 GG 25 21 22 24 92 0.010 0.000 0.000 0.000 0.003 144142 AA 19 18 19 20 76 AG 6 2 1 3 12 GG 0 0 0 1 1 0.465 0.055 0.013 2.617 0.432 144224 AA 0 0 0 0 0 AG 1 1 0 0 2 GG 25 20 21 24 90 0.010 0.012 0.000 0.000 0.011 144738 CC 24 20 22 24 90 CT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.025 144771 CC 27 19 22 24 92 CT 0 1 0 0 1 TT 0 0 0 0 0 0.000 0.013 0.000 0.000 0.003 144971 CC 25 20 22 24 91 CG 2 0 0 0 2 GG 0 0 0 0 0 0.040 0.000 0.000 0.000 0.011 145058 GG 0 0 0 0 0 GT 3 0 0 0 3 TT 24 20 22 24 90 0.093 0.000 0.000 0.000 0.025 145144 AA 26 20 22 24 92 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 145344 AA 24 21 22 24 91 AG 3 0 0 0 3 GG 0 0 0 0 0 0.093 0.000 0.000 0.000 0.025 145381 CC 26 21 22 24 93 CT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 145578 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 27 21 22 23 93 0.000 0.000 0.000 0.011 0.003 145616 CC 26 21 22 24 93 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 145690 AA 0 0 0 0 0 AG 3 0 0 0 3 GG 24 21 22 24 91 0.093 0.000 0.000 0.000 0.025 145758 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 26 21 22 24 93 0.010 0.000 0.000 0.000 0.003 145777 CC 27 21 22 23 93 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 148315 AA 1 0 0 1 2 AC 7 1 1 3 12 CC 19 20 20 19 78 0.120 0.012 0.012 2.457 2.934 148532 GG 0 0 0 0 0 GT 1 0 0 0 1 TT 26 21 22 24 93 0.010 0.000 0.000 0.000 0.003 148625 CC 27 21 22 23 93 CG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 148798 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 21 22 24 93 0.010 0.000 0.000 0.000 0.003 148813 CC 0 0 0 0 0 CG 0 4 0 0 4 GG 27 17 22 24 90 0.000 0.233 0.000 0.000 0.044 148842 AA 13 21 21 24 79 AG 14 0 1 0 15 GG 0 0 0 0 0 3.308 0.000 0.012 0.000 0.707 149399 GG 0 0 0 0 0 GT 1 0 0 0 1 TT 26 22 22 24 94 0.010 0.000 0.000 0.000 0.003 149480 CC 0 0 0 0 0 CT 0 0 0 1 1 TT 27 22 22 23 94 0.000 0.000 0.000 0.011 0.003 149563 AA 4 0 0 0 4 AT 13 8 4 4 29 TT 10 14 18 20 62 0.005 1.086 0.220 0.198 0.068 149564 AA 24 22 22 24 92 AT 3 0 0 0 3 TT 0 0 0 0 0 0.093 0.000 0.000 0.000 0.024 149633 CC 27 14 20 20 81 CT 0 8 2 4 14 TT 0 0 0 0 0 0.000 1.086 0.050 0.198 0.601 149995 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 26 22 22 23 93 0.010 0.000 0.000 0.000 0.003 150099 AA 16 22 21 24 83 AT 11 0 1 0 12 TT 0 0 0 0 0 1.767 0.000 0.012 0.000 0.432 150311 AA 26 22 22 24 94 AT 1 0 0 0 1 TT 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 150468 CC 12 11 19 20 62 CG 13 7 3 4 27 GG 2 0 0 0 2 0.364 1.049 0.118 0.198 0.225 172446 AA 0 0 0 0 0 AT 4 0 1 0 5 TT 23 21 21 24 89 0.173 0.000 0.012 0.000 0.070 173111 CC 21 22 22 24 89 CT 6 0 0 0 6 TT 0 0 0 0 0 0.422 0.000 0.000 0.000 0.101 173602 AA 23 22 20 22 87 AG 4 0 1 0 5 GG 0 0 0 0 0 0.173 0.000 0.012 0.000 0.072 173650 AA 0 0 0 0 0 AT 1 0 0 0 1 TT 26 22 21 22 91 0.010 0.000 0.000 0.000 0.003 177419 AA 2 14 18 16 50 AG 16 7 3 7 33 GG 9 1 1 1 12 1.977 0.011 2.296 0.044 2.841 177498 CC 8 1 2 1 12 CG 16 7 2 7 32 GG 2 12 17 15 46 2.340 0.000 7.843 0.025 2.617 177640 AA 0 0 0 0 0 AG 1 0 0 0 1 GG 25 20 21 23 89 0.010 0.000 0.000 0.000 0.003 187163 AA 27 22 22 23 94 AG 0 0 0 1 1 GG 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 187240 CC 15 22 20 23 80 CT 11 0 1 0 12 TT 0 0 0 0 0 1.872 0.000 0.012 0.000 0.448 187254 AA 24 22 21 23 90 AC 2 0 0 0 2 CC 0 0 0 0 0 0.042 0.000 0.000 0.000 0.011 191492 CC 8 1 1 1 11 CT 12 7 6 5 30 TT 4 12 11 15 42 0.020 0.000 0.023 0.429 2.123 191719 CC 0 0 0 0 0 CT 1 0 0 0 1 TT 24 21 19 21 85 0.010 0.000 0.000 0.000 0.003 191724 AA 25 13 17 21 76 AG 0 8 2 0 10 GG 0 0 0 0 0 0.000 1.163 0.059 0.000 0.328 191789 AA 26 19 19 21 85 AG 0 2 0 0 2 GG 0 0 0 0 0 0.000 0.053 0.000 0.000 0.012 192800 AA 0 0 0 0 0 AG 10 0 1 0 11 GG 14 19 20 24 77 1.662 0.000 0.012 0.000 0.391 192998 CC 26 20 21 23 90 CT 0 0 0 1 1 TT 0 0 0 0 0 0.000 0.000 0.000 0.011 0.003 193131 AA 0 0 0 0 0 AG 0 0 0 1 1 GG 26 20 21 23 90 0.000 0.000 0.000 0.011 0.003 193200 CC 0 0 0 0 0 CT 2 0 0 0 2 TT 24 20 21 24 89 0.042 0.000 0.000 0.000 0.011 193269 AA 0 0 0 0 0 AG 0 1 0 0 1 GG 26 19 21 24 90 0.000 0.013 0.000 0.000 0.003 193314 AA 25 20 21 24 90 AG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 193421 -- 0 0 0 1 1 +- 8 0 4 3 15 ++ 18 19 17 20 74 0.860 0.000 0.233 2.617 0.059 193493 AA 25 19 20 24 88 AG 1 0 1 0 2 GG 0 0 0 0 0 0.010 0.000 0.012 0.000 0.011 193676 AA 25 17 19 24 85 AG 1 2 2 0 5 GG 0 0 0 0 0 0.010 0.059 0.053 0.000 0.073 193808 CC 25 19 21 24 89 CG 1 0 0 0 1 GG 0 0 0 0 0 0.010 0.000 0.000 0.000 0.003 Note: AD: African_Descent ED: European_Descent HD: Hispanic_Descent XD: Asian_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000595: T 076942: ttt 126024: t 193421: t