Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000297 00000 ------------ C 1.00 1.00 0.97 1.00 1.00 0.99 G 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 000552 00000 ------------ G 1.00 1.00 0.93 1.00 1.00 0.98 A 0.00 0.00 0.07 0.00 0.00 0.02 0000 --- --- --- --- 000595 00000 ------------ - 0.90 0.94 1.00 0.97 1.00 0.98 + 0.10 0.06 0.00 0.03 0.00 0.02 0000 --- --- --- --- 000730 00000 ------------ T 0.77 0.94 0.95 0.97 0.90 0.92 G 0.23 0.06 0.05 0.03 0.10 0.08 0000 --- --- --- --- 000822 00000 ------------ G 1.00 0.94 0.82 0.95 1.00 0.94 A 0.00 0.06 0.18 0.05 0.00 0.06 0000 --- --- --- --- 001018 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001104 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001370 00000 ------------ A 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001462 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001464 00000 ------------ A 0.83 0.79 0.82 0.93 0.92 0.87 G 0.17 0.21 0.18 0.07 0.08 0.13 0000 --- --- --- --- 001490 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001768 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 001801 00000 ------------ C 1.00 0.92 1.00 1.00 1.00 0.99 T 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001828 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001890 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 002044 00043 5' UTR C 1.00 0.96 1.00 0.98 1.00 0.99 T 0.00 0.04 0.00 0.02 0.00 0.01 0000 --- --- --- --- 002058 00057 5' UTR A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 002361 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 002426 00000 ------------ C 0.97 0.96 1.00 1.00 1.00 0.99 G 0.03 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002854 00000 ------------ C 1.00 0.92 0.97 1.00 1.00 0.98 A 0.00 0.08 0.03 0.00 0.00 0.02 0000 --- --- --- --- 002936 00000 ------------ T 1.00 1.00 0.97 1.00 1.00 0.99 C 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 076727 00000 ------------ A 0.93 0.96 1.00 1.00 1.00 0.98 G 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 076761 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 076942 00000 ------------ - 1.00 1.00 0.95 0.93 1.00 0.97 + 0.00 0.00 0.05 0.07 0.00 0.03 0000 --- --- --- --- 091478 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 091505 00000 ------------ T 0.93 0.96 1.00 1.00 1.00 0.98 C 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 091748 00000 ------------ A 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 091865 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 092236 00000 ------------ A 0.89 1.00 1.00 1.00 1.00 0.98 G 0.11 0.00 0.00 0.00 0.00 0.02 0000 --- --- --- --- 092302 00000 ------------ G 0.43 0.58 0.61 0.89 0.80 0.69 A 0.57 0.42 0.39 0.11 0.20 0.31 0000 --- --- --- --- 092403 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 117602 00000 ------------ A 0.79 0.88 0.73 0.93 0.92 0.85 C 0.21 0.12 0.27 0.07 0.08 0.15 0000 --- --- --- --- 118281 00000 ------------ C 1.00 1.00 1.00 0.97 1.00 0.99 A 0.00 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 118632 00000 ------------ T 1.00 0.96 0.83 0.95 0.91 0.92 A 0.00 0.04 0.17 0.05 0.09 0.08 0000 --- --- --- --- 119023 00000 ------------ T 1.00 1.00 1.00 0.95 1.00 0.99 A 0.00 0.00 0.00 0.05 0.00 0.01 0000 --- --- --- --- 125148 00000 ------------ G 1.00 0.96 1.00 0.98 1.00 0.99 A 0.00 0.04 0.00 0.02 0.00 0.01 0000 --- --- --- --- 125169 00000 ------------ T 0.96 0.96 1.00 1.00 1.00 0.99 A 0.04 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 126024 00000 ------------ - 0.00 0.00 0.02 0.00 0.00 0.01 + 1.00 1.00 0.98 1.00 1.00 0.99 0000 --- --- --- --- 126118 00000 ------------ A 1.00 1.00 1.00 0.82 0.81 0.91 T 0.00 0.00 0.00 0.18 0.19 0.09 0000 --- --- --- --- 126234 00000 ------------ A 0.96 0.92 1.00 1.00 1.00 0.98 G 0.04 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 126434 00000 ------------ G 1.00 0.96 0.86 0.95 0.92 0.93 A 0.00 0.04 0.14 0.05 0.08 0.07 0000 --- --- --- --- 126890 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 132102 00000 ------------ A 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 138691 00000 ------------ G 1.00 1.00 1.00 1.00 0.96 0.99 A 0.00 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 138720 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 139166 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 139269 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 139367 00000 ------------ G 0.50 0.21 0.80 0.89 0.81 0.70 A 0.50 0.79 0.20 0.11 0.19 0.30 0000 --- --- --- --- 139379 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 139490 00000 ------------ G 1.00 1.00 0.79 0.95 0.91 0.92 A 0.00 0.00 0.21 0.05 0.09 0.08 0000 --- --- --- --- 139512 00000 ------------ G 1.00 1.00 0.97 1.00 1.00 0.99 A 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 139552 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 143169 00000 ------------ A 0.42 0.68 0.61 0.85 0.80 0.70 G 0.58 0.32 0.39 0.15 0.20 0.30 0000 --- --- --- --- 143238 00000 ------------ A 0.92 1.00 1.00 1.00 1.00 0.99 T 0.08 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 143338 00000 ------------ T 0.77 0.91 0.89 0.97 1.00 0.92 A 0.23 0.09 0.11 0.03 0.00 0.08 0000 --- --- --- --- 143460 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 143463 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 G 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 143508 00000 ------------ C 1.00 1.00 0.95 1.00 1.00 0.99 G 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 143532 00000 ------------ T 0.93 0.92 1.00 0.98 1.00 0.97 C 0.07 0.08 0.00 0.02 0.00 0.03 0000 --- --- --- --- 143901 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 144142 00000 ------------ A 0.81 0.96 0.95 0.97 0.90 0.92 G 0.19 0.04 0.05 0.03 0.10 0.08 0000 --- --- --- --- 144224 00000 ------------ G 1.00 0.96 0.98 1.00 1.00 0.99 A 0.00 0.04 0.02 0.00 0.00 0.01 0000 --- --- --- --- 144738 00000 ------------ C 0.97 0.92 1.00 1.00 1.00 0.98 T 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 144771 00000 ------------ C 1.00 1.00 0.97 1.00 1.00 0.99 T 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 144971 00000 ------------ C 0.93 1.00 1.00 1.00 1.00 0.99 G 0.07 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 145058 00000 ------------ T 0.97 0.92 1.00 1.00 1.00 0.98 G 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 145144 01444 SYNON A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0461 CAA CAG GLN(Q) GLN(Q) 145344 00000 ------------ A 1.00 0.88 1.00 1.00 1.00 0.98 G 0.00 0.12 0.00 0.00 0.00 0.02 0000 --- --- --- --- 145381 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 145578 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 145616 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 145690 00000 ------------ G 0.97 0.92 1.00 1.00 1.00 0.98 A 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 145758 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 145777 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 148315 00000 ------------ C 0.80 0.88 0.98 0.98 0.89 0.91 A 0.20 0.12 0.02 0.02 0.11 0.09 0000 --- --- --- --- 148532 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 148625 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 148798 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 148813 00000 ------------ G 1.00 1.00 0.90 1.00 1.00 0.98 C 0.00 0.00 0.10 0.00 0.00 0.02 0000 --- --- --- --- 148842 00000 ------------ A 0.83 0.62 1.00 0.98 1.00 0.92 G 0.17 0.38 0.00 0.02 0.00 0.08 0000 --- --- --- --- 149399 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 149480 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 149563 00000 ------------ T 0.70 0.50 0.82 0.91 0.92 0.81 A 0.30 0.50 0.18 0.09 0.08 0.19 0000 --- --- --- --- 149564 00000 ------------ A 0.97 0.92 1.00 1.00 1.00 0.98 T 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 149633 00000 ------------ C 1.00 1.00 0.82 0.95 0.92 0.93 T 0.00 0.00 0.18 0.05 0.08 0.07 0000 --- --- --- --- 149995 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 150099 00000 ------------ A 0.83 0.75 1.00 0.98 1.00 0.94 T 0.17 0.25 0.00 0.02 0.00 0.06 0000 --- --- --- --- 150311 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 150468 00000 ------------ C 0.80 0.54 0.81 0.93 0.92 0.83 G 0.20 0.46 0.19 0.07 0.08 0.17 0000 --- --- --- --- 172446 00000 ------------ T 0.93 0.92 1.00 0.98 1.00 0.97 A 0.07 0.08 0.00 0.02 0.00 0.03 0000 --- --- --- --- 173111 00000 ------------ C 0.83 0.96 1.00 1.00 1.00 0.97 T 0.17 0.04 0.00 0.00 0.00 0.03 0000 --- --- --- --- 173602 00000 ------------ A 0.93 0.92 1.00 0.98 1.00 0.97 G 0.07 0.08 0.00 0.02 0.00 0.03 0000 --- --- --- --- 173650 00000 ------------ T 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 177419 01990 SYNON A 0.50 0.21 0.80 0.89 0.81 0.70 G 0.50 0.79 0.20 0.11 0.19 0.30 0643 GGA GGG GLY(G) GLY(G) 177498 00000 ------------ G 0.50 0.23 0.78 0.86 0.80 0.69 C 0.50 0.77 0.23 0.14 0.20 0.31 0000 --- --- --- --- 177640 00000 ------------ G 1.00 0.95 1.00 1.00 1.00 0.99 A 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 187163 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 187240 00000 ------------ C 0.83 0.73 1.00 0.98 1.00 0.93 T 0.17 0.27 0.00 0.02 0.00 0.07 0000 --- --- --- --- 187254 00000 ------------ A 1.00 0.91 1.00 1.00 1.00 0.99 C 0.00 0.09 0.00 0.00 0.00 0.01 0000 --- --- --- --- 191492 00000 ------------ T 0.58 0.23 0.78 0.78 0.83 0.69 C 0.42 0.77 0.23 0.22 0.17 0.31 0000 --- --- --- --- 191719 00000 ------------ T 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 191724 00000 ------------ A 1.00 1.00 0.81 0.95 1.00 0.94 G 0.00 0.00 0.19 0.05 0.00 0.06 0000 --- --- --- --- 191789 00000 ------------ A 1.00 1.00 0.95 1.00 1.00 0.99 G 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 192800 00000 ------------ G 0.82 0.75 1.00 0.98 1.00 0.94 A 0.18 0.25 0.00 0.02 0.00 0.06 0000 --- --- --- --- 192998 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 193131 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 193200 00000 ------------ T 0.97 0.95 1.00 1.00 1.00 0.99 C 0.03 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 193269 00000 ------------ G 1.00 1.00 0.97 1.00 1.00 0.99 A 0.00 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 193314 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 193421 00000 ------------ - 0.17 0.14 0.00 0.10 0.10 0.09 + 0.83 0.86 1.00 0.90 0.90 0.91 0000 --- --- --- --- 193493 00000 ------------ A 1.00 0.95 1.00 0.98 1.00 0.99 G 0.00 0.05 0.00 0.02 0.00 0.01 0000 --- --- --- --- 193676 00000 ------------ A 1.00 0.95 0.95 0.95 1.00 0.97 G 0.00 0.05 0.05 0.05 0.00 0.03 0000 --- --- --- --- 193808 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000595: T 076942: TTT 126024: T 193421: T