BLVRA Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
A
A
T
T
C
T
G
C
T
C
T
C
A
A
G
G
A
C
A
T
G
G
A
G
G
G
C
C
C
C
T
C
T
C
A
C
A
G
G
C
T
T
T
C
C
C
A
A
A
G
50 |
NOT SCANNED
C
T
C
C
T
C
T
G
G
G
T
G
T
A
C
T
G
G
T
C
T
G
A
C
T
C
A
G
C
A
A
G
T
G
A
A
C
A
T
C
T
G
T
G
G
T
T
T
T
G
100 |
REPEAT
C
C
T
A
G
C
C
A
G
C
A
T
C
C
C
T
T
C
T
C
C
T
A
G
C
A
G
C
A
G
C
A
C
T
C
A
G
C
A
T
G
T
C
C
T
T
T
T
G
G
150
G
G
A
A
T
C
A
C
T
C
T
T
T
T
C
T
C
T
T
G
T
G
G
T
T
T
A
T
T
T
A
A
A
G
T
G
A
C
T
G
C
A
C
A
A
T
C
A
G
A
200
C
C
C
C
A
G
A
G
T
T
T
G
G
C
T
T
A
T
G
T
C
C
T
A
G
G
C
C
T
T
G
C
C
A
G
T
G
A
A
A
A
T
A
T
G
G
T
A
C
C
250
T
C
A
T
C
A
G
T
G
G
C
A
G
T
T
A
T
T
T
T
T
C
C
G
A
G
A
A
A
G
G
A
C
A
T
A
T
C
A
T
G
A
C
C
C
A
A
G
G
G
300 |
var(274):[A:0.01]
G
C
AGCAGCAG GGAGGGGTGG ATGGAAGAGA CAGATAACAA ACAATAAGCT
350
AAATAAACAA ATTCAGTCAG GAGCTAAAGA AATAAGTCAT T
C
AGGAGT
G
G
400 |
var(392):[G:0.01]
|
REPEAT
G
G
C
A
G
G
T
G
G
C
A
A
T
T
T
C
A
A
A
T
G
G
A
G
T
G
G
T
T
A
G
G
G
T
A
G
T
T
C
T
C
A
A
T
G
A
G
G
C
A
450
G
C
A
T
T
T
G
A
G
A
A
A
A
T
A
T
C
A
G
G
A
A
G
A
G
T
G
A
G
A
A
G
T
A
G
T
C
G
A
G
C
A
T
T
C
C
A
A
A
C
500
A
G
A
C
A
G
G
A
G
C
C
T
G
T
G
C
A
A
A
G
A
C
C
C
T
G
C
A
G
C
A
G
A
G
C
C
C
T
G
T
C
T
G
C
C
T
T
G
C
A
550 |
var(530):[A:0.01]
T
A
A
G
A
A
A
T
A
G
C
A
G
G
G
A
G
G
C
C
A
G
A
G
T
G
A
C
T
G
G
A
G
C
A
G
A
G
T
G
A
G
C
C
A
G
T
G
G
G
600
G
A
G
G
C
A
G
T
A
G
C
A
G
A
T
G
A
G
G
T
T
G
T
A
G
G
G
G
T
A
A
C
A
G
A
G
G
A
G
C
A
G
A
T
C
A
G
G
C
A
650
G
G
G
C
T
T
T
G
G
G
T
T
T
T
A
C
T
C
T
G
A
G
T
T
T
G
G
G
A
A
A
C
C
A
C
T
G
G
G
A
A
G
G
T
T
T
T
G
G
G
700
C
A
G
A
G
G
A
G
G
A
A
T
T
T
G
A
T
C
T
G
G
C
T
T
T
C
T
T
T
T
T
T
T
A
A
G
G
T
C
A
C
T
C
T
G
G
C
T
G
C
750
T
T
T
A
T
G
G
G
G
A
C
A
G
G
C
T
G
C
A
G
G
G
A
T
A
T
C
A
G
G
G
A
A
G
A
G
A
C
C
A
C
T
G
T
C
A
T
G
A
C
800
C
C
A
G
G
T
A
G
C
A
G
A
T
G
A
T
G
G
A
G
G
C
A
G
A
G
G
T
A
A
G
A
A
G
T
G
G
T
C
A
G
G
C
T
C
T
G
G
G
T
850
A
T
G
C
T
A
G
G
G
A
G
A
T
C
C
A
A
C
C
A
A
C
A
G
A
A
T
T
T
T
T
G
G
G
C
C
C
T
G
G
A
G
G
T
G
G
G
A
T
G
900
T
G
A
G
A
G
A
A
A
G
G
T
T
T
C
T
G
A
A
A
C
A
G
C
A
A
G
G
T
T
T
C
T
G
G
C
C
T
T
G
A
C
A
A
C
T
G
G
A
A
950
G
A
T
G
G
A
G
T
T
G
C
C
A
T
C
G
A
G
A
T
G
G
T
G
A
T
G
C
T
A
T
G
G
G
G
A
A
G
A
G
A
T
C
A
G
G
G
G
C
A
1000
C
A
G
A
T
T
T
G
G
A
T
G
T
G
T
T
G
A
G
A
T
T
G
A
A
A
T
G
T
A
T
T
T
T
A
G
A
G
A
T
C
C
A
A
G
A
G
G
A
G
1050
G
T
A
T
T
A
A
G
G
A
G
G
C
A
G
C
T
G
G
A
T
A
G
A
G
G
A
G
T
A
T
G
G
A
G
T
T
C
A
G
G
A
G
G
C
A
G
G
T
C
1100
C
C
G
C
C
T
G
G
A
G
A
T
A
A
A
A
A
T
T
C AAAGCCAAGC CTTCTCTCT
C
TGCACTCAAC
1150 |
var(1140):[T:0.15]
AAAACCTCAC TTAAACAGGC TTGTCAGGTC ATGGAATACG GTACTAGAAC
1200
TCTTTGTTGG GGAAAATGCC AGTCAACCTT ACCCGTCAGA ACG
C
TGCCTT
1250 |
var(1244):[A:0.01]
TAAGATCAGA GATCTCTTTC CTTCAGCCTA ATCCACCCCT CTCCCTGTTT
1300
TCTCCCCTAG CCCCACTAGG CTAGAAGCTC CCTGGCTTCT CCCACATCAG
1350
G
ATCCCCAAC AAACCCATTC CCAGGTGGAT AAGAGCCCAG GCAGTTCCCT
1400 |
var(1351):[A:0.09]
AGACCACGTT CACTACTTCC TAGCTACCCA AGAGCAGGAC ATCGCAGACA
1450
CCGGCCTCCT GGAATATTCC CTCCGCTCCT CACATTTACA GGAAGGACTC
1500
AGGTAAGCCT CGGCGCCAGT TCAGTCGGCC CGGGGCCACT AAATACCAAT
1550
GGGATCCAGT GGGTTCTA
C
G TGGTGAGTGG GGGGCGGATA AGAGAGATGC
1600 |
var(1569):[T:0.02]
GACACCCCCC GGGCCTGCCC CCCCCACGCC GGGGCCAGGC ACACCGTGAG
1650
GGGGCCAGGC ACACCGTGAG
G
GGGCCCAGC CACTTCCATA CGCCCTCCGG
1700 |
var(1671):[T:0.01]
TCGGCCGGCA CCCACCACCC ACCCCTCGCC ACCAAGCTGG
G
T
G
CAGAGAA
1750 |
var(1741):[T:0.01]
|
var(1743):[C:0.01]
CAGGGCAGGC GCACGGACGG TTCTTACGGC CCCAGGCGCC AGACCCAGGG
1800
CACAGAGGCC AGGATCTCAC GCGCGACCGC ACGAGGCCGG GACCCT
C
CCT
1850 |
var(1847):[T:0.01]
CCCCTTCCGT CCACTCCCTT CCCCACCGCC TCCGGTCCCC TCCCGGTCTC
1900
CGCCACCCCG CTTCGGGGCC CCCGCCCCCC AGCCGGGCAG CCAATCGGAG
1950
CTGGGATC
C
C
G
C
C
C
C
G
G
T
C
C
G
C
A
A
A
G
C
C
G
G
T
G
G
C
G
C
C
C
G
G
A
G
G
C
T
G
C
A
C
G
2000 | Exon 1 |
UTR
|
var(1979):[T:0.09]
G
A
G
A
G
C
G
G
T
G
C
C
C
G
C
G
T
C
A
G
GTGAGGCGCG CGCGGGGAAC
G
GGGGTCGCG
2050 |
var(2041):[A:0.01]
CGCAGGGGAG CGGGGGTCGC GCGCGGCTTC CATAGAGC
G
C TAGGGCCTGA
2100 |
var(2089):[A:0.01]
GCTCGAAGCC CCAGGCCCGC AGGAGGCCCG GGCCCGCGGC CGCCAGAGCC
2150
GGGAC
A
CAGC CTGGGCGCCG CCTGCCCCGC CCCGCCCCGC CCGGGCCCGG
2200 |
var(2156):[G:0.26]
AGTGAGGACG CGGTCGGAGG CCCAGCAGCG CGGGTCCCGG CAAGGGGCTT
2250
TCTCAACTAC ACAAAAGACA GTCTAAAAAA TTAAGTCTCC ATTTCGGTTA
2300
AGACTGCCCG TAGTTTCGGT TTTTATGTAG ACCCAAGAGG GCAGGCTCGG
2350
CGTCCGCGTG CCGCGTAGTC CGGCGGCTCC AGGAGCGCGA GCGGCTGGGC
2400
CCGGGCGTAG CCACCGCAGG GCCGCTAGCT CGGCCGGGAC CCGCCTGGGA
2450
TGCCCTGGGG TCTGCTCCGC TGGGGCGAAT CCTGAGGCGC CAC
G
C
G
A
G
G
C
2500 |
REPEAT
A
C
T
T
G
G
C
C
T
C
T
C
C
T
A
G
C
C
C
C
G
C
T
T
T
C
G
T
T
T
T
T
G
G
A
A
A
C
T
G
G
A
A
A
C
T
A
T
C
A
2550
C
T
T
A
T
T
T
C
G
T
A
G
A
C
G
G
T
G
T
G
A
G
G
G
T
T
A
C
A
T
G
A
C
A
G
T
G
T
T
C
T
G
T
A
A
A
G
T
G
C
2600
A
C
T
C
T
A
C
A
T
A
T
G
A
A
G
T
G
C
T
C
A
G
A
A
A
T
A
T
G
G
C
T
A
A
T
A
ATGA GGGTATTTAT
2650 |
var(2602):[T:0.01]
AAACTACTTA AATTATAAAA AGAATGAGAC ATCAGACTTA CAGTTTTGGA
2700
TACTAATTTT TTTCACTTAA CGTTCATTAT GTGATAGGAG TTTTCCATCC
2750
T
A
TTATACC
G
C
T
G
T
G
C
G
A
T
C
T
G
A
T
C
T
T
G
G
G
C
A
C
G
T
T
A
A
C
C
A
A
C
C
T
C
T
T
G
T
2800 |
var(2752):[G:0.01]
|
REPEAT
T
G
C
C
T
C
G
A
T
T
T
T
C
T
C
A
C
C
T
G
T
A
A
A
A
G
T
G
G
G
G
G
T
A
A
T
C
A
T
A
A
T
G
C
T
T
A
C
T
T
2850
A
G
T
A
G
G
A
T
A
G
C
C
C
T
G
A
A
G
A
A
T
A
A
G
T
G
A
C
T
T
A
G
C
G
A
A
C
A
T
A
A
A
T
A
G
C
T
T
A
C
2900
A
A
T
A
G
G
G
T
T
T
T
C
A
G
C
A
T
G
G
G
A
A
G
G
A
T
T
C
A
G
T
A
A
A
T
G
T
T
A
G
C
T
G
T
C
A
T
CAT
2950
CACCACCTAC AAAGGAAGCA ATACTGTGCT GAAAGTTTTT CCATCATTAA
3000
TGTAATTTCT ATAGTACGAT TCCCAAGAAG ATATTAAAAT TA
T
GGAAATA
3050 |
var(3043):[C:0.01]
AAGGTATTGG TATATTCCTA ATTATTTCCT AAAAGATTGT ATTGATAAAT
3100
ATGCTCATCC TTCCCTTAAC GGGATGCATT CCAGAAAAAC
A
A
G
T
C
A
A
A
T
G
3150 |
REPEAT
T
T
A
G
A
C
A
A
A
G
T
A
T
C
A
G
A
A
G
G
G
A
A
A
T
T
C
T
G
T
A
G
C
C
A
G
A
G
A
G
C
T
A
A
A
A
A
T
T
A
3200 |
NOT SCANNED
C
A
A
T
A
G
G
G
T
C
T
C
T
A
A
T
T
A
T
A
C
T
T
C
A
A
C
T
T
T
T
T
T
A
G
G
A
A
T
A
A
T
T
C
T
C
A
G
T
G
3250
T
G
T
T
T
T
C
C
C
A
C
A
T
T
T
C
A
T
A
T
G
T
A
A
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
C
3300 |
REPEAT
A
G
A
G
C
C
T
C
G
C
C
C
T
G
T
C
A
C
C
A
G
G
C
T
G
G
A
G
T
A
C
A
G
T
G
G
C
G
C
G
A
T
C
T
C
G
G
C
T
C
3350
A
C
T
G
C
A
A
C
T
T
C
C
A
C
C
T
G
C
T
G
G
G
T
T
C
A
A
G
C
A
A
T
T
C
T
T
C
T
G
A
C
C
T
C
A
G
G
T
G
A
3400 |
REPEAT
T
C
C
A
C
C
C
G
C
C
T
C
G
G
C
C
T
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A
T
T
A
T
A
A
C
A
G
G
C
G
T
G
G
C
A
T
3450
G
A
G
T
C
A
C
C
G
C
G
C
C
C
G
G
C
C
G
A
T
C
T
T
T
A
C
T
T
T
T
T
T
A
T
T
C
T
T
T
G
T
A
C
C
C
C
C
T
G
3500
C
C
T
A
T
C
C
A
G
T
T
A
G
C
A
T
G
T
G
A
T
T
A
A
A
G
T
C
A
A
A
G
A
T
T
T
G
C
C
A
C
T
T
T
G
G
G
C
C
A
3550 |
REPEAT
C
A
T
C
T
A
T
T
A
A
T
T
T
T
C
A
T
C
T
T
T
G
T
T
A
T
A
A
T
T
G
T
A
T
T
T
A
G
T
T
T
T
T
G
A
T
C
T
A
C
3600
A
C
T
G
C
T
T
A
T
T
A
C
T
C
C
C
A
G
T
C
A
T
T
T
T
T
T
C
T
A
G
A
A
C
T
G
A
A
A
A
T
C
T
G
G
T
A
A
A
A
3650
T
A
C
T
C
A
A
A
A
T
T
G
C
A
C
T
G
A
C
T
T
C
T
A
T
G
T
A
G
A
G
G
C
G
A
C
A
C
T
C
C
A
T
C
A
G
A
A
C
C
3700
G
T
G
G
G
C
T
G
A
C
A
G
G
G
A
A
T
C
C
C
A
C
T
G
T
G
C
A
G
G
A
G
C
T
G
C
G
C
G
C
A
T
T
T
T
C
A
T
T
T
3750
C
T
G
A
T
T
C
T
C
T
T
T
G
G
C
G
T
A
T
C
C
A
G
G
A
C
T
C
T
G
A
T
G
A
C
A
T
G
A
T
C
A
T
A
T
A
T
T
T
A
3800
T
C
A
G
T
A
G
T
A
A
C
A
G
G
T
T
G
G
G
C
C
A
T
T
T
G
T
T
T
T
T
T
G
T
G
G
T
A
A
A
T
C
A
T
A
T
A
T
T
T
3850
A
A
G
A
T
T
T
T
A
G
A
A
A
T
A
A
G
T
T
G
A
T
A
G
C
C
A
T
G
T
A
T
T
T
T
G
G
A
A
T
T
T
G
A
A
A
A
A
G
A
3900
C
A
T
T
G
C
A
T
T
A
C
T
C
A
G
C
T
T
C
A
A
A
T
T
A
A
G
C
T
T
T
A
A
T
C
A
A
A
T
A
G
T
G
A
A
A
C
T
T
T
3950
C
C
A
T
T
A
A
T
G
G
A
C
A
G
T
G
T
A
T
A
C
C
T
T
T
T
T
G
T
G
T
A
T
T
T
A
A
A
A
A
A
A
A
A
A
A
C
A
C
T
4000
G
A
A
T
A
T
A
G
T
G
C
C
T
T
T
G
T
G
A
C
A
G
G
G
G
A
G
C
T
T
A
G
T
T
C
C
T
G
A
C
A
A
T
G
T
C
C
T
C
T
4050
T
G
A
G
T
C
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
T
G
G
A
G
T
C
T
C
A
C
T
G
T
G
T
C
G
C
C
C
A
G
G
4100 |
REPEAT
C
T
G
G
A
G
T
G
C
A
G
T
G
G
C
G
C
C
A
T
C
T
T
G
G
C
T
C
A
C
T
G
C
A
A
C
C
T
C
C
G
C
C
C
C
C
T
G
G
G
4150
T
T
C
A
A
G
T
G
A
T
T
C
T
C
A
T
T
C
C
T
C
A
G
C
T
T
C
C
T
A
A
G
T
A
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
4200
C
G
C
A
C
C
A
C
C
A
T
G
A
C
C
A
G
C
T
A
A
T
T
T
T
T
A
T
A
C
T
T
T
T
A
G
T
A
G
A
G
A
C
A
G
G
G
T
T
T
4250
T
G
C
C
A
T
G
T
T
G
G
C
T
A
G
G
T
T
G
G
T
C
T
C
G
A
A
C
T
C
C
T
G
A
C
C
T
C
A
A
G
T
A
A
T
C
C
A
C
C
4300
C
A
C
C
A
T
G
G
C
C
T
C
C
C
C
A
A
A
G
T
G
C
T
G
G
G
A