BLM Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TGCAAATTGT TTTCAGTAGA ATGCAATTGA TTACTAAGCT GTGGATTTCA
50
TCAGTTCT
G
C
C
A
G
T
T
T
T
T
G
T
A
T
A
T
A
T
T
T
G
T
A
G
T
T
A
T
T
T
C
A
T
T
A
T
T
C
C
T
C
A
100 |
REPEAT
T
T
T
G
A
C
T
A
T
G
T
G
T
G
T
G
G
T
A
C
T
T
T
G
A
A
T
T
T
T
C
C
A
T
T
G
A
A
G
C
A
G
T
T
G
T
A
A
T
C
150
T
T
T
C
T
G
G
A
T
A
T
C
T
C
A
T
T
C
A
T
T
A
A
T
G
A
G
T
T
A
A
A
T
A
A
A
A
T
C
T
C
T
A
A
C
A
T
T
T
A
200
T
T
T
T
A
T
A
T
C
T
G
T
A
T
TATATT TGATATTAAA ATTATTCTTC AACA
G
T
A
G
T
A
250 |
REPEAT
T
A
C
A
G
T
T
A
T
A
T
G
A
A
T
A
A
G
C
T
G
C
A
A
T
T
T
A
T
C
T
A
T
T
C
A
T
C
T
A
T
T
G
G
T
G
G
A
C
A
300
T
C
T
G
G
G
T
T
T
T
T
T
C
C
C
T
T
T
G
G
C
T
A
T
T
A
T
G
A
A
T
A
A
A
G
C
T
G
C
T
A
T
G
A
G
T
C
T
T
T
350 |
var(320):[A:0.01]
|
var(342):[C:0.02]
T
G
G
T
G
A
A
T
A
A
A
G
G
C
A
T
T
C
A
T
T
T
T
T
T
G
G
G
G
T
A
A
A
T
A
T
C
T
A
G
A
A
A
T
G
G
G
A
T
T
400
T
C
T
G
G
G
G
T
A
T
A
G
G
G
T
A
G
G
G
G
T
A
A
A
T
T
T
G
A
T
T
T
C
A
G
T
A
G
A
G
A
C
T
G
A
T
G
T
T
T
450
C
C
A
A
A
G
T
G
G
T
T
G
T
A
C
C
A
T
T
T
T
A
C
A
C
T
C
C
C
A
T
C
A
A
C
A
C
T
G
T
A
T
G
A
G
A
G
T
C
C
500 |
var(455):[C:0.02]
C
A
T
T
T
C
T
G
C
A
T
C
T
T
T
G
C
A
A
C
T
A
A
G
G
G
A
A
T
T
G
T
C
A
G
T
C
T
T
T
T
C
A
T
T
T
C
A
G
C
550
T
A
T
T
C
T
A
T
G
G
A
G
T
G
T
T
T
A
A
T
A
G
T
A
T
C
A
T
A
T
T
T
T
G
G
T
T
T
C
A
A
T
T
T
A
C
C
A
T
A
600
G
A
A
G
A
T
T
T
T
C
A
G
G
A
G
G
G
A
G
G
T
A
A
C
T
T
G
A
A
C
A
G
A
T
T
T
T
T
A
C
A
T
T
T
T
A
GAAA
650
ACTCTTTCTG CGTATTATGT GGAGAATGAT
T
A
T
T
T
G
T
A
T
A
C
C
A
A
A
G
T
T
C
A
700 |
REPEAT
T
A
G
C
A
G
C
A
T
T
A
T
T
C
A
C
A
A
T
A
G
C
C
A
A
A
A
G
G
T
G
G
G
A
A
T
A
A
C
C
A
A
G
C
A
T
C
C
A
T
750
T
T
A
T
A
T
G
G
A
T
G
A
A
T
G
G
A
T
A
A
A
C
A
A
A
A
T
G
T
A
G
T
A
T
A
C
A
T
G
T
A
T
A
A
T
G
G
A
A
T
800
A
T
T
A
T
T
T
A
G
C
C
T
C
A
A
G
A
A
G
G
A
A
G
A
A
A
T
T
C
T
G
A
T
A
C
A
T
G
C
T
A
C
A
A
C
A
T
A
G
A
850
T
G
C
T
C
C
T
T
G
A
A
G
A
C
A
T
T
A
T
G
C
T
A
A
G
T
G
A
A
A
T
A
A
G
C
C
A
A
T
C
A
G
A
A
A
A
G
A
G
C
900 |
var(852):[C:0.06]
A
A
T
T
A
T
T
G
T
A
T
G
A
T
T
C
A
A
T
T
T
A
T
A
T
G
C
G
G
T
A
C
C
T
C
G
C
A
C
T
T
A
C
A
G
A
C
A
G
A
950
A
A
G
T
G
C
A
A
T
A
T
C
G
G
C
T
A
T
A
A
G
G
G
G
T
T
G
T
G
A
G
A
A
A
C
G
G
G
T
A
A
C
G
G
G
G
A
G
T
T
1000
A
C
T
G
T
G
T
A
A
C
A
G
G
C
A
G
A
T
T
T
T
C
T
A
T
T
T
G
G
G
A
T
A
A
T
G
A
A
A
A
A
G
T
T
C
T
G
G
A
G
1050
A
T
G
G
A
T
A
G
T
G
G
T
G
A
T
G
G
T
T
T
C
A
C
A
A
C
A
A
T
G
T
G
A
A
T
G
T
A
C
T
T
A
A
T
G
C
C
A
G
T
1100
G
A
A
C
T
G
T
A
C
A
C
T
T
A
A
A
A
A
T
G
G
T
G
A
A
T
T
T
T
A
T
G
T
T
A
G
A
T
A
G
A
T
T
T
T
A
T
C
A
C
1150
A
CACACAAAG AGGAGGGAGG GCGGGAGGGA AGGAGAGAGG GAAGGAAGTA
1200
GAGAGGGGAG AAGAGAGGAA GAAAGGAAAG AAAG
T
A
A
G
A
T
C
T
G
G
C
A
T
C
A
C
1250 |
var(1235):[:0.03]
|
REPEAT
A
G
G
G
C
C
C
A
C
A
T
T
C
C
C
G
C
G
T
G
T
C
A
G
C
A
A
T
A
G
G
C
T
G
A
A
A
C
A
G
A
A
G
C
A
TGGTT
1300
TCTCACGTGT CCATGGAGGC ATCTGAGTGT GTGCCCACTT TC
C
CGGTTCA
1350 |
var(1343):[T:0.01]
ATGACAATTT GCACCTGCTC GTGTAGAGGG GTACGGGTGA AACAGAGACC
1400
AGTATTATTA AGGGGATGGA GAGGAGAGAC CGCCAAAACA TCGCAGAGAC
1450
ACACCGTCGG AGCCAAGA
G
A ATGGGGTGCA GACGCCTGGC TTGGCCTGTG
1500 |
var(1469):[C:0.02]
GGAACTGGCA AGTCTCAGCT CTCAAACGCC CGGGCTTTTC AACCCGCCAC
1550
AGCCGGGTTC CAGCTGCCTA CTTCCTTTAA AGCCTTCACC GACTC
T
AAAA
1600 |
var(1596):[G:0.04]
CACCAAAAAC AAAGACCCAA CTAGCTCCGG AAGCCCGAGA TGTAACCGTA
1650
GTCATCTGAC CCTCCCGTCC GGACTCTGAT TGGGCTTTGG AGATACGCGT
1700
CCCTCCCGGC GCTGTACGGC GACCCCGCCC CAGCAGCCTG AGGGGGCGGG
1750
AACAGATGTC CGAGTGCGAC AGTATTGGTC GGCTTCCCCA GGAAGCAGCC
1800
AATCGGAATA GGCAAGCTTC CGGCGGGAAG TGAGCCAGGG CTTG
G
C
G
C
G
G
1850 | Exon 1 |
UTR
C
G
G
C
C
G
T
G
G
T
T
G
C
G
G
C
G
C
G
G
G
A
A
G
T
T
T
G
G
A
T
C
C
T
G
G
T
T
C
C
G
T
C
C
G
C
T
A
G
G
1900
A
G
T
C
T
G
C
G
T
G
C
G
A
G
GTGAGT ACCGCGCGCG TAACTACGGG TCGGTCCGCA
1950
TTGATCTAGC CCTGCTCTGG CGGCCCG
G
CC CGGAGCTGGA GGCCGCTCGG
2000 |
var(1978):[T:0.01]
GTTCTTCCGT TTCCTGCACT GGTTCGCCTC GGCCCGCTGA GTCCTCTAGT
2050
CTGGCCAACA TCCTGGGAGG ACAGCAGATA CATAAATACG TTCC
C
A
A
A
T
G
2100 |
REPEAT
G
G
G
A
A
A
C
A
G
A
G
G
C
C
C
G
G
G
G
C
G
G
G
G
G
C
G
A
A
C
T
C
T
G
C
C
A
A
G
G
T
C
T
C
C
C
G
G
G
G
2150
C
G
T
C
G
G
A
G
G
C
C
G
A
G
C
A
T
G
G
G
C
T
A
G
G
A
C
C
T
G
G
CATGTT
G
TT GCCCATATAC
2200 |
var(2188):[C:0.13]
TCCAGTGC
G
T AACATGATGC CCTGCACAGA GTAATCCCAG CCCAGACCTC
2250 |
var(2209):[C:0.13]
TGGCACTACT ACCTCCGTGT CCCTCCTGAG GAACAACGAA AACACTTTGT
2300
ACTTTTTCTG TGGCCTTCCA TAATCACGAG CTGGGCTAC
T
C
T
T
G
T
T
T
T
T
G
2350 |
NOT SCANNED
|
REPEAT
A
G
T
G
T
C
T
A
C
T
G
T
G
T
G
C
C
A
T
G
T
T
C
C
T
G
G
C
A
C
C
C
T
T
G
A
T
C
T
T
A
C
A
A
C
T
G
T
A
G
2400
C
T
T
T
A
C
G
A
T
A
T
C
C
C
A
G
C
A
A
A
G
C
G
A
A
G
T
G
C
T
T
A
A
G
A
A
T
A
C
T
G
C
A
T
C
A
G
A
T
T
2450 |
REPEAT
G
C
T
T
G
G
G
T
T
C
G
A
A
T
T
C
T
G
G
C
T
C
C
T
T
C
A
C
A
T
T
T
A
G
C
T
C
T
G
T
G
T
C
T
A
C
T
G
C
A
2500
C
G
T
T
A
C
T
G
A
A
A
C
A
C
T
A
A
G
T
G
T
C
T
T
G
G
T
T
T
T
C
G
T
C
T
G
T
C
A
T
A
T
G
G
G
G
G
A
A
A
2550
T
G
G
T
C
T
C
T
T
C
T
A
C
T
T
C
C
T
G
G
C
G
T
T
T
T
T
G
T
T
A
G
G
A
T
T
A
A
A
C
G
A
C
T
T
A
A
T
A
T
2600
A
T
G
C
A
A
T
A
A
T
A
A
A
T
G
C
T
T
C
G
A
A
G
G
C
T
A
C
C
T
G
T
T
A
C
A
T
A
G
T
A
C
A
C
A
G
T
A
A
G
2650
G
G
T
T
C
T
G
T
T
A
T
C
A
T
T
A
C
C
C
A
G
A
G
A
A
G
C
G
G
A
T
G
A
A
A
T
T
G
T
C
C
C
C
A
T
T
T
T
A
G
2700 |
REPEAT
A
C
A
T
G
G
A
G
A
A
T
C
T
G
A
A
G
T
A
C
A
A
A
G
A
G
G
T
T
G
T
C
T
C
C
G
T
A
C
A
G
A
A
A
G
A
G
C
A
T
2750
T
T
G
G
T
G
A
T
T
A
A
G
T
G
C
T
A
G
A
G
A
T
A
C
A
G
G
A
T
T
T
G
A
A
C
T
A
A
G
C
G
C
C
T
G
A
T
T
T
T
2800
A
A
A
G
T
A
T
G
T
C
C
C
A
C
A
A
C
A
T
T
A
G
G
C
T
T
T
C
T
C
C
T
A
T
A
G
C
C
C
T
C
A
C
C
T
G
T
C
C
T
2850
T
A
G
G
T
C
A
C
A
C
A
G
A
A
C
T
T
T
A
G
G
T
A
C
C
T
C
A
T
G
G
C
G
T
G
A
G
A
T
G
G
A
G
C
A
G
G
T
G
A
2900
C
T
G
A
C
A
G
C
T
C
C
T
T
G
T
G
C
C
A
C
C
C
A
T
G
C
A
G
A
T
A
A
A
T
A
A
C
A
C
T
G
G
T
G
T
G
T
C
A
C
2950
T
G
T
C
A
A
G
A
T
T
A
A
G
G
G
A
C
A
G
G
A
A
T
T
C
G
A
G
A
G
A
C
T
G
C
A
T
G
A
G
A
G
A
T
C
A
G
A
A
G
3000
A
T
G
A
A
G
A
A
G
C
G
G
G
T
A
G
G
C
A
A
A
A
G
T
A
T
T
C
T
G
T
T
T
G
G
G
G
A
A
T
A
G
T
A
A
A
T
A
G
A
3050
A
T
T
A
A
T
T
A
A
A
T
C
A
A
C
A
T
T
T
T
G
T
T
A
G
C
T
G
G
G
C
T
G
C
T
T
A
T
A
C
T
G
T
C
A
G
A
C
A
G
3100
T
A
G
C
T
T
A
T
A
A
T
C
T
A
C
T
G
G
G
A
A
G
A
A
A
T
G
A
A
A
T
T
T
C
T
G
G
G
T
C
C
T
G
T
G
T
C
A
C
T
3150
T
T
C
A
A
T
G
C
C
A
C
T
C
A
C
C
A
T
G
A
C
A
G
G
T
A
C
C
T
T
A
T
A
A
G
T
A
T
A
G
T
T
T
A
C
A
G
T
C
C
3200
T
A
T
C
A
G
T
A
A
C
C
T
G
G
A
G
A
A
G
T
A
G
T
T
A
T
T
T
C
C
T
T
C
G
T
T
T
T
A
C
T
G
A
G
G
A
A
A
C
C
3250
A
A
G
A
G
T
T
A
A
A
A
A
A
T
C
A
G
G
A
A
A
A
G
T
G
T
T
A
G
A
T
G
T
G
C
A
G
T
A
G
A
A
C
A
T
C
A
T
C
A
3300
T
G
C
T
G
G
G
A
A
G
T
T
C
T
A
C
A
C
A
T
C
C
G
C
T
T
C
A
G
G
A
C
A
G
G
T
G
G
T
A
T
T
A
C
C
T
A
T
G
A
3350
G
C
A
G
G
A
A
G
G
G
A
A
G
G
G
A
A
A
A
A
G
G
T
A
A
G
G
G
G
A
A
T
G
A
G
T
G
A
T
A
G
T
T
T
A
T
T
G
T
T
3400
T
T
G
A
T
T
T
T
T
A
A
A
T
T
T
T
T
A
T
C
T
G
T
T
T
T
T
T
C
C
T
T
T
T
T
C
A
T
A
G
T
C
A
T
T
C
C
T
G
G
3450
A
A
T
G
A
G
T
G
A
G
T
T
T
G
T
T
T
T
T
G
T
T
T
T
T
G
T
T
T
T
T
G
G
G
G
G
A
T
G
G
A
G
T
C
T
C
G
C
T
C
3500 |
REPEAT
T
G
T
C
G
C
C
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
C
G
C
G
A
T
C
T
T
G
G
C
T
C
A
C
T
G
C
A
A
G
C
T
C
3550
C
G
C
C
T
C
C
C
G
G
G
T
T
C
A
T
G
C
C
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
C
C
C
A
A
A
T
A
G
C
T
G
G
3600
G
A
C
T
A
C
A
G
G
C
A
C
C
C
A
C
C
A
C
C
A
C
G
C
C
C
A
G
C
T
A
A
T
T
T
T
T
T
G
T
A
T
T
T
T
T
A
G
T
A
3650
G
A
G
A
C
G
G
G
G
T
T
T
C
A
C
T
G
T
G
T
T
A
G
C
C
A
G
G
A
T
G
G
T
C
T
C
G
A
T
C
T
C
C
T
G
A
C
C
T
C
3700
G
T
G
A
T
C
C
G
C
C
T
G
C
C
T
C
C
G
C
C
T
C
C
C
A
A
G
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
G
A
G
C
C
A
3750
C
C
G
C
G
C
C
C
G
G
C
C
A
T
G
A
G
T
G
A
G