************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 bidxx.phase.inp bidxx.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST bidxx.phase.out_freqs : haplotype frequency estimates bidxx.phase.out_pairs : most likely haplotype pairs for each individual bidxx.phase.out_recom : estimates of recombination parameters bidxx.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 61 Positions of loci: 785 823 1391 1434 2041 3191 3236 23131 23286 23299 23300 26166 26398 26443 26513 26791 26798 27301 28121 28152 28153 28203 28213 28410 31479 32170 32639 32646 32691 32840 33483 33849 33924 34124 34386 34436 35012 36502 36544 36600 36610 36817 36904 37078 37182 37201 37209 37222 37855 38000 38336 38843 39436 39440 39481 39586 40692 40708 40731 41339 42098 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file bidxx.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 AAGCAGGGGCTCCCTACCGGCTCCGGCGAAAGIIGGCAGTCTTGGTAICCTGTCGAGATDI 1.000000 2 AAGCCGGCGTCCCCTACCGGCTCCGGCAAAGAIDGTCAACCTTGATAITCTGCCGACGGDI 1.000000 3 AAGCCGGCGTCCCCTACCGGCTCCGGCGAAAAIIGTTGACTCCGGCADCCTGCCGACGTDI 1.000000 4 AAGCCGGCGTCCCCTACCGGCTCCGGCGAAAAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 5 AAGCCGGCGTCCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 1.000000 6 AAGCCGGCGTCCCCTACCGGCTCCGGCGAAAGIIGTCAACCCTGGTAICTTCTTAAGATDI 1.000000 7 AAGCCGGCGTCCCCTACCAATCCTGGTGCCAGDIGTCGACTCCGGTAICCTGCCGACGTDI 1.000000 8 AAGCCGGCGTCCTGAACCGGCTCCGGCGAAAAIIGTTAGTCTTGGTAICCTGTCGACGTDI 1.000000 9 AAGCCGGCGTCCTGAATCGGCTCCGGCGAAAGIIGGCAGTCTTGGTAICCTGTCGAGATDI 2.000000 10 AAGCCGGCGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 11 AAGCCGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 6.000000 12 AAGCCGGCGTCTCGAATCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 1.000000 13 AAGCCGGCGTCTCGAATCGGCTCCGCCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 14 AAGCCGGCGTCTCGAATCAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 15 AAGCCGGGACTCCCAGCCGACTCCGGCGAAGAIIGTCGACTCCGGCADCCTGCCGACGTDI 2.000000 16 AAGCCGGGACTCCCAGCCGACTCCGGCGAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 17 AACCAGGGACTCCCTACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 2.000000 18 AACCAAACGTCCCCAGCCGACTCCGGCGAAGAIIGTCGACTCCGGCADCCTGCCGACGTDI 1.000000 19 AACCAAACGTCCTGAACCGGCTCCGGCGAAAAIIGTTAGTCTTGGTAICCTGTCGACGTDI 2.000000 20 AACCAAACGTCCTGTACCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 4.000000 21 AACCAAACGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 16.000000 22 AACCAAACGTCTCGAATCGGCTCCGGCAAAGAIDGTCAACCTTGATAITCTGCCGACGGII 1.000000 23 AACCAAACGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 24 AACCAAACGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGCCGTDI 10.000000 25 AACCAAACGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGCCGGDI 1.000000 26 AACCAAACGTCTCGTATCGGCTCCGGCAAAGAIIGTTGACTCCGGCADCCTGCCGACGTDI 2.000000 27 AACCAAAGGCTCCCAGCCGGCTCCGGCGAAAAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 28 AACCAAAGGCTCCCTACCGGCTCCGGCGAAAAIIGTTGACTCCGGCADCCTGCCGACGTDI 1.000000 29 AACCAAAGACTCCCTACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 30 AACCCGGCGTCCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 1.000000 31 AACCCGGCGTCCCCTACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 2.000000 32 AACCCGGCGTCCCGTACCGGCTCCGGTGCCAGDIGGCAGTCTTGGTAICCTGTCGAGGTDI 1.000000 33 AACCCGGCGTCCTGTACCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 34 AACCCGGCGTCTCGAATCGGCTCCGGCAAAAAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 35 AACCCGGCGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 5.000000 36 AACCCGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 4.000000 37 AACCCGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGCCGTDI 2.000000 38 AACCCGGCGTCTCGAATCAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 39 AACCCGGGGTCCCGTACCAATCCTGGCGAAAAIIGTTGACTCCGGCADCCTGCCGACGTDI 1.000000 40 AACCCGGGGCTCCCAGCCGGCTCCGGCGAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 41 AACCCGGGGCTCCCTACCGGCTCCGGCGAAAGIIGGCAGTCCCGGTAICCTGTTGACGTDI 1.000000 42 AACCCGGGGCTCCCTACCGGCTCCGGCGAAAGIIGTCAACCCTGGTAICTTCTTAAGATDI 1.000000 43 AACCCGGGACTCCCTACCGGCTCCGGCAAAGAIDGTCAACCTTGATAITCTGCCGACGGDI 7.000000 44 AACCCGGGACTCCCTACCGGCTCCGGCGAAAAIIGTCAACCCCGGTAICCTGTCGACGTDI 1.000000 45 AACCCGGGACTCCCTACCGGCTCCGGCGAAAAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 46 AACCCGGGACTCCCTACCGGCTCCGGCGAAAAIIGTTAGTCTTGGTAICCTGTCGACGTDI 1.000000 47 AACCCGGGACTCCCTACCAATCCTGGCGAAAAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 48 AACCCGGGACTCCCTACTGGCCCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 49 AACCCGGGACTCCCTACTAATCATACCGAAAAIDGTCAACCTTGATAITCTGCCGACGGDI 2.000000 50 AACCCGGGACTCCGAATCGGCTCCGGCAAAGAIDGTCAACCTTGATAITCTGCCGACGGDI 1.000000 51 AACCCGGGACTCCGAATCGGCTCCGGCGAAGAIDGTCAACCTTGACAITCTGCCGACGGDI 1.000000 52 AACCCGGGACTCCGAGCCGACTCCGGCGAAGAIIGTTGACTCCGGCADCCCGCCGACGTDI 2.000000 53 AACCCGGGACTCTGAATCGGCTCCGGCGAAGAIDGTCAACCTTGATAITCTGCCGACGGDI 1.000000 54 AACCCGGGACTCTGTACCGGCTCCGGTGCCAAIIGTCAACCTCTACADCCTGTCGACGTDI 1.000000 55 AACCCGGGACTTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 56 AACCCGGGACTTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 57 AACCCGAGACTCTGAATCGGCTCCGGCGAAGAIDGTCAACCTTGATAITCTGCCGACGTDI 1.000000 58 AACCCAACGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 59 ACGCCGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGCCGTDI 1.000000 60 ACCCAAACGTCCCCTACCGGCTCCGGTGCCAAIIGTCGACTCCGGCADCCTGCCGACGTDI 1.000000 61 ACCCAAACGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 62 ACCCAAAGACTCCCTACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 63 ACCCCGGCGTCCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 1.000000 64 ACCCCGGGATCCTGTACCGGCTCCGGCGAAAAIIGTCAACCTCGGTAICCTGTCGACGTDI 1.000000 65 ACCCCGGGACTCCCTACCAATCCTGGCGAAAAIDGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 66 ACCTAGGCGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 67 ACCTAGGGGCTCCCTACCGGCTCCGGTGCCAAIIGTCGACTCCGGCADCCTGCCGACGTDI 1.000000 68 GAGCAAACGTCCCCTACCGGCTCCGGCGAAAGIIGGCGACTCTGGTAICTTCTTAAGATDI 1.000000 69 GAGCAAACGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 2.000000 70 GAGCCGGCGTCCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 1.000000 71 GAGCCGGCGTCCCCTACCAATCCTGGTGCCAGDIGTCGACTCCGGTAICCTGCCGACGTDI 3.000000 72 GAGCCGGCGTCCCGTACCAATCCTGGCGAAAAIIGTTGACTCCGGCADCCTGCCGACGTDI 1.000000 73 GAGCCGGCGTCCCGTACCAATCCTGGTGCCAGDIGTCGACTCCGGTAICCTGCCGACGTDI 1.000000 74 GAGCCGGCGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 7.000000 75 GAGCCGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 4.000000 76 GAGCCGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGCCGTDI 1.000000 77 GAGCCGGCGTCTCGAATCGGCTCCACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 78 GAGCCGGGGCTCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGCCDCCTGCCGACGTDI 1.000000 79 GAGCCGGGGCTCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 2.000000 80 GAGCCGGGACTCCCTACCGGCTCCGGCGAAAAIIGTTGACTCCGGCADCCTGCCGACGTDI 2.000000 81 GAGCCGGGACTCCCTACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 82 GAGCCGGGACTCCGAACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 83 GACCAGGCGTCCCCTACCGGCTCCGGCGAAAAIIGTTGACTCCGGCADCCTGCCGAGGTDI 1.000000 84 GACTAGGCGTCTCGAATCGGCTCCGGCAAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 4.000000 85 GACTAGGCGTCTCGAATCGGCTCCGGCAAAGADDGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 86 GACTAGGCGTCTCGAATCGGCTCCGGCGAAAAIIGTTGACTCCGGCADCCTGCCGACGTDI 1.000000 87 GACTAGGCGTCTCGAATCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 1.000000 88 GACTAGGCGTCTCGAATCGGCTCCGGCGAAGAIIGTTGACTCCGGCCDCCTGCCGACGTDI 1.000000 89 GACTAGGGGCTCCCTACCGGCTCCGGCAAAGAIDGTCAACCTTGATAITCTGCCGACGGDI 1.000000 90 GACTAGGGGCTCCCTACCGGCTCCGGCGAAAAIIGGCAGTCCCGGTAICCTGTTGACGTDI 1.000000 91 GACTAGGGGCTCCCTACCGGCTCCGGCGAAAGIIGGCAACCCTGGTAICTTCTTAAGATDI 11.000000 92 GACTAGGGGCTCCCTACTAATCATACCGAAAAIIATCGACTCCTGCADCCCGCTGACGTID 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (66,91) P002: (69,74) P003: (52,60) P004: (9,39) P005: (49,71) P006: (84,42) P007: (21,36) P008: (74,2) P009: (11,43) P010: (10,91) P011: (26,32) P012: (11,85) P013: (33,36) P014: (69,71) P015: (6,30) P016: (61,74) P017: (37,40) P018: (43,45) P019: (25,36) P020: (24,74) P021: (27,27) P022: (21,23) P023: (34,84) P024: (21,63) P025: (75,91) P026: (21,74) P027: (33,49) P028: (82,91) P029: (4,26) P030: (20,79) P031: (41,58) P032: (43,90) P033: (17,62) P034: (21,34) P035: (21,35) P036: (37,79) P037: (7,68) P038: (8,47) P039: (21,24) P040: (43,55) P041: (18,91) P042: (9,44) P043: (13,43) P044: (75,87) P045: (36,78) P046: (35,35) P047: (20,74) P048: (91,91) P049: (21,43) P050: (16,29) P051: (24,80) P052: (20,24) P053: (31,75) P054: (75,84) P055: (24,89) P056: (46,1) P057: (53,57) P058: (19,84) P059: (15,67) P060: (31,11) P061: (51,54) P062: (12,43) P063: (35,88) P064: (50,65) P065: (15,19) P066: (20,24) P067: (21,21) P068: (24,24) P069: (21,24) P070: (76,86) P071: (21,73) P072: (11,35) P073: (56,91) P074: (61,77) P075: (21,74) P076: (21,72) P077: (38,80) P078: (11,55) P079: (14,22) P080: (28,47) P081: (21,92) P082: (11,91) P083: (3,91) P084: (70,91) P085: (10,71) P086: (17,81) P087: (5,48) P088: (83,59) P089: (52,64) P090: (21,24) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 (A) (C) C [T] A G G C G T C T C G A A T C G G C T C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) (A) C T A G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P002 G A G C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I G A G C C G G C G T C T C G A A T C G G C T C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P003 A A [C] C C G G G A C T C C G A G C C G A C T C C G G C G A A G A I I G T T G A C T C C G G C A D C C C G C C G A C G T D I A C C C A A A C G T C C C C T A C C G G C T C C G G T G C C A A I I G T C G A C T C C G G C A D C C T G C C G A C G T D I 0 P004 A A [G] C C G G (C) G T C C T G A A T C G G C T C C G G C G A A A G I I G G C A G T C T T G G T A I C C T G T C G A G A T D I A A [C] C C G G (G) G T C C C [G] T A C C A A T C C T G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I 0 P005 A A [C] C C G G G A C T C C C T A C T A A T C A T A C C G A A A A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I G A G C C G G C G T C C C C T A C C A A T C C T G G T G C C [A] G D I G T C G A C T C C G G T A I C C T G C C G A C G T D I 0 P006 (G) A [C] (T) (A) G G (C) G (T) (C) T C G A A T C G G C T C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I (A) A [C] (C) (C) G G (G) G (C) (T) C C C T A C C G G C T C C G G C G A A A G I I G T C A A C C C T G G T A I C T T C T T A A G A T D I 0 P007 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I (I) G T T G A C T C C G G C C D C C T G C C G A C G T D I A A [C] C C G G C G T C T C G A A T C G G C T C C G G C A A A G A [D] (D) G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P008 (G) A [G] C C G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (A) A [G] C C G G C G T C C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P009 A A (G) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I A A (C) C C G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P010 (A) A (G) (C) (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A (C) (T) (A) G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P011 A A C C (A) (A) (A) C G T C T C G T A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I A A C C (C) (G) (G) C G T C C C G T A C C G G C T C C G G T G C C A [G] D I G G C A G T C T T G G T A I C C T G T C G A G G T D I 0 P012 A A G C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I G A C T A G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P013 A A C C C G G C G T C C T G T A C C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P014 G A G C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I G A G C (C) (G) (G) C G T C C C C T A C C A A T C C T G G T G C C [A] G D I G T C G A C T C C G G T A I C C T G C C G A C G T D I 0 P015 A A (G) C C G G C G T C C C C T A C C G G C T C C G G C G A A A G I I G T C A A C C C T G G T A I C T T C T T A A G A T D I A A (C) C C G G C G T C C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P016 A (C) C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A (D) [D] G T T G A C T C C G G C C D C C T G C C G A C G T D I G (A) G C C G G C G T C T C G A A T C G G C T C C G G C A A A G A (I) I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P017 A A C C C G G C G T C T C G A A T C G G C T C C G G C (A) A A G A [D] [D] G T T G A C T C C G G C C D C C T G C C G (C) C G T D I A A C C C G G G G C T C C C A G C C G G C T C C G G C (G) A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G (A) C G T D I 0 P018 A A [C] C C G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I [A] A [C] C C G G G A C T C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P019 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G (C) C G (G) D I A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G (A) C G (T) D I 0 P020 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A (D) [D] G T T G A C T C C G G C C D C C T G C C G (C) C G T D I G A G C C G G C G T C T C G A A T C G G C T C C G G C A A A G A (I) [I] G T T G A C T C C G G C C D C C T G C C G (A) C G T D I 0 P021 A A C C A A A G G C T C C C A G C C G G C T C C G G C G A A A A I [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A G G C T C C C A G C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P022 A A C C A [A] [A] C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I [A] A C [C] A [A] [A] C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P023 A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A (A) A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I G A C T A G G C G T C T C G A A T C G G C T C C G G C A A A (G) A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P024 A (A) [C] C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A (C) [C] C (C) (G) (G) C G T C C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P025 G A G (C) (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I G A [C] (T) (A) G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P026 (A) A (C) C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A (G) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P027 A A C C C G G C G T C C T G T A C C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C C G G G A C T C C C T A C T A A T C A T A C C G A A A A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P028 G A (G) (C) (C) G G G (A) C T C C (G) (A) A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D G A (C) (T) (A) G G G (G) C T C C (C) (T) A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P029 A A G C C G G C G T C C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C (C) D C C T G C C G A C G T D I A A C C A A A C G T C T C G T A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C (A) D C C T G C C G A C G T D I 0 P030 (A) A (C) C (A) (A) (A) C G T C C T G T A C C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A (G) C (C) (G) (G) G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P031 A A C C C (G) (G) G G C T C C C T A C C G G C T C C G G C G A A A (G) I I G G C A G T C C C G G T A I C C T G T T G A C G T D I A A C C C (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G (A) I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P032 (A) A C (C) (C) G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I (G) A C (T) (A) G G G G C T C C C T A C C G G C T C C G G C G A A A A I I G G C A G T C C C G G T A I C C T G T T G A C G T D I 0 P033 A (A) [C] [C] A G G G A C T C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D A (C) C C A A A G A C T C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D 0 P034 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A (G) A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A (A) A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P035 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P036 (A) A (C) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I (G) A (G) C C G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P037 (A) A G C (C) (G) (G) C G T C C C C T A C C A A T C C T G G T G C C [A] G D I G T C G A C T C C G G T A I C C T G C C G A C G T D I (G) A G C (A) (A) (A) C G T C C C C T A C C G G C T C C G G C G A A A G I I G G C G A C T C T G G T A I C T T C T T A A G A T D I 0 P038 A A (G) C C G G (C) (G) (T) (C) C T G A A C C G G C T C C G G C G A A A A I I G T T A G T C T T G G T A I C C T G T C G A C G T D I A A (C) C C G G (G) (A) (C) (T) C C C T A C C A A T C C T G G C G A A A A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P039 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I 0 P040 A A C C C G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I A A C C C G G G A C T T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P041 A A C C A A A C G T C C C C A G C C G A C T C C G G C G A A G A I I G T C G A C T C C G G C A D C C T G C C G A C G T D I G A C T A G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P042 A A (G) C C G G (C) (G) (T) (C) C T G A A T C G G C T C C G G C G A A A G I I G G C A G T C T T G G T A I C C T G T C G A G A T D I A A (C) C C G G (G) (A) (C) (T) C C C T A C C G G C T C C G G C G A A A A I I G T C A A C C C C G G T A I C C T G [T] C G A C G T D I 0 P043 A A (G) C C G G C G T C T C G A A T C G G C T C C G C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D A A (C) C C G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P044 G A (G) (C) (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G [A] C G T D I G A (C) (T) (A) G G C G T C T C G A A T C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P045 (A) A (C) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A (G) C C G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G C C D C C T G C C G A C G T D I 0 P046 A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C C G G C G T C T C G A A T C G G C T C C G G C A A A [G] A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P047 A A C C (A) (A) (A) C G T C (C) (T) G (T) A (C) C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I G A G C (C) (G) (G) C G T C (T) (C) G (A) A (T) C G G C T C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P048 G A C T A G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I G A C T A G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P049 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C C G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P050 A A (G) C (C) (G) (G) G A C T C C C A G C C G [A] C T C C G G C G A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A (C) C (A) (A) (A) G A C T C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D 0 P051 (A) A (C) C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I (G) A (G) C (C) (G) (G) G A C T C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I 0 P052 A A C C A A A C G T C C T G T A C C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I 0 P053 (A) A (C) C C G G C G T C C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D (G) A (G) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P054 G A (G) (C) (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I G A (C) (T) (A) G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P055 (A) A C (C) A (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I (G) A C (T) A (G) (G) G G C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P056 A A (C) C (C) G G G (A) C T C C C T A C C G G C T C C G G C G A A A A I I G T T A G T C T T G G T A I C C T G T C G A C G T D I A A (G) C (A) G G G (G) C T C C C T A C C G G C T C C G G C G A A A G I I G G C A G T C T T G G T A I C C T G T C G A G A T D I 0 P057 A A C C C G (G) G A C T C T G A A T C G G C T C C G G C G A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I A A [C] C C G (A) G A C T C T G A A T C G G C T C C G G C G A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G T D I 0 P058 (A) A C (C) A (A) (A) C G T C C T G A A C C G G C T C C G G C G A A A A I I G T T A G T C T T G G T A I C C T G T C G A C G T D I (G) A C (T) A (G) (G) C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P059 A A [G] C C G G G A C T C C C A G C C G A C T C C G G C G A A G A I I G T C G A C T C C G G C A D C C T G C C G A C G T D I A C C [T] A G G G G C T C C C T A C C G G C T C C G G T G C C A A I I G T C G A C T C C G G C A D C C T G C C G A C G T D I 0 P060 [A] A [C] C C G G C G T C C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D [A] A [G] C C G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P061 A A C C C G G G A C T C C G A A T C G G C T C C G G C G A A G A I D G T C A A C C T T G A C A I T C T G C C G A C G G D I A A C C C G G G [A] [C] [T] C T G T A C C G G C T C C G G T G C C A A I [I] G T C A A C C T C T A C A D C C T G T C G A C G T D I 0 P062 A A G C C G G C G T C T C G A A T C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I A A C C C G G G A C T C C C T A C C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G D I 0 P063 A A C C C G G C G T C T C G A A T C G G C T C C G G C (A) A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I G A C T A G G C G T C T C G A A T C G G C T C C G G C (G) A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P064 A (A) C C C G G G A C T C C [G] (A) A (T) C G G C T C C G G C [A] A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G [G] D I A (C) C C C G G G A C T C C [C] (T) A (C) C A A T C C T G G C G A A A A I D G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P065 A A (G) C (C) [G] [G] G A C T C C C A G C C G A C T C C G G C G A A G A I I G T C G A C T C C G G C A D C C T G C C G A C G T D I A A (C) C (A) [A] [A] C G T C C T G A A C C G G C T C C G G C G A A A A I I G T T A G T C T T G G T A I C C T G T C G A C G T D I 0 P066 A A C C A A A C G T C C T G T A C C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I 0 P067 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P068 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I 0 P069 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I 0 P070 G A (G) (C) (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I G A (C) (T) (A) G G C G T C T C G A A T C G G C T C C G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I 0 P071 (A) A (C) C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A (G) C (C) (G) (G) C G T C C C G T A C C A A T C C T G G T G C C A G D I G T C G A C T C C G G T A I C C T G C C G A C G T D I 0 P072 A A (G) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A [D] [D] G T T G A C T C C G G C C D C C T G C C G A C G T D I A A (C) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P073 A A [C] C (C) G G G A C T T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I [G] A C [T] (A) G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P074 (A) (C) [C] C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) (A) [G] C (C) (G) (G) C G T C T C G A A T C G G C T C C A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D 0 P075 (A) A (C) C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A (G) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P076 (A) A [C] C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A [G] C (C) (G) (G) C G T C C C G T A C C [A] [A] [T] [C] C [T] G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I 0 P077 (A) A (C) C C G G (C) (G) T C T C G A A T C A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D (G) A (G) C C G G (G) (A) [C] [T] C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I 0 P078 A A (G) C C G G C G T C T C G A A T C G G C T C C G G C A A A G A (D) [D] G T T G A C T C C G G C C D C C T G C C G A C G T D I A A (C) C C G G G A C T T C G A A T C G G C T C C G G C A A A G A (I) [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P079 A A (G) C (C) (G) (G) C G T C T C G A A T C A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D A A (C) C (A) (A) (A) C G T C T C G A A T C G G C T C C G G C A A A G A I D G T C A A C C T T G A T A I T C T G C C G A C G G I I 0 P080 A A C C (A) (A) (A) G (G) C T C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C (A) D C C T G C C G A C G T D I A A C C (C) (G) (G) G (A) C T C C C T A C C A A T C C T G G C G A A A A I I G T T G A C T C C G G C (C) D C C T G C C G A C G T D I 0 P081 (A) A C (C) A (A) (A) (C) G (T) (C) T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A C (T) A (G) (G) (G) G (C) (T) C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D 0 P082 [A] A [G] C (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G A C G T D I G A C [T] (A) G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P083 (A) A (G) (C) (C) G G (C) G (T) (C) C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A C G T D I (G) A (C) (T) (A) G G (G) G (C) (T) C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P084 G A (G) (C) (C) G G C G T C C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I G A (C) (T) (A) G G G G C T C C C T A C C G G C T C C G G C G A A A G I I G G C A A C C C T G G T A I C T T C T T A A G A T D I 0 P085 (A) A G C C G G C G T C T C G A A T C G G C T C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I (G) A G C C G G C G T C C C C T A C C A A T C C T G G T G C C [A] G D I G T C G A C T C C G G T A I C C T G C C G A C G T D I 0 P086 A A C C (A) G G G A C T C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D G A G C (C) G G G A C T C C C T A C T A A T C A T A C C G A A A A I I A T C G A C T C C T G C A D C C C G C T G A C G T I D 0 P087 A A (G) C C G G C G T C C C C T A C C G G C (T) C C G G C G A A A G I I G [G] C A A C C C T G G T A I C T T C T T A A G A T D I A A (C) C C G G G A C T C C C T A C T G G C (C) C C G G C A A A G A [I] [I] G T T G A C T C C G G C C D C C T G C C G A C G T D I 0 P088 (G) (A) [C] [C] (A) G G C G T C C C C T A C C G G C T C C G G C G A A A A I I G T T G A C T C C G G C A D C C T G C C G A (G) G T D I (A) (C) [G] [C] (C) G G C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C (C) G T D I 0 P089 A A [C] C C G G G A C T C C G A G C C G A C T C C G G C G A A G A I I G T T G A C T C C G G C A D C C C G C C G A C G T D I A C C C [C] G G G A T C C T G T A C C G G C T C C G G C G A A A A I I G T C A A C C T C [G] [G] [T] A I C C T G T C G A C G T D I 0 P090 A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A I I G T T G A C T C C G G C C D C C T G C C G A C G T D I A A C C A A A C G T C T C G A A T C G G C T C C G G C A A A G A D D G T T G A C T C C G G C C D C C T G C C G C C G T D I END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 (A) (C) ? ? = = = ? ? ? ? T = G A = T = = = = ? = = = = = A = = ? ? ? ? = T T ? = = T = C = = C C D = C = G C C G = C G = = = (G) (A) ? ? = = = ? ? ? ? C = C T = C = = = = ? = = = = = G = = ? ? ? ? = G C ? = = C = T = = T A I = T = C T T A = G A = = = 0 P002 = = = = A A A = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = C G G = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = ? ? ? = = = = = = 0 P003 = A ? ? ? G G G A C T = = ? A G = = ? ? ? ? ? ? = = C = A A G = = = = = T ? = = = = = = = = = = = = C = = = = = = = = = = = C ? ? ? A A C G T C = = ? T A = = ? ? ? ? ? ? = = T = C C A = = = = = C ? = = = = = = = = = = = = T = = = = = = = = = = 0 P004 = = ? = ? = = (C) = = = = ? ? ? = T = G G C T = C = = = = = = = G ? = = G C ? G T C T T = = T = I ? ? = = T = = = G A = = = = = ? = ? = = (G) = = = = ? ? ? = C = A A T C = T = = = = = = = A ? = = T T ? A C T C C = = C = D ? ? = = C = = = C G = = = 0 P005 A = ? = = = = G A C T = = = = = = T = = = = A = A C C = A A ? ? I ? = = = ? = = C T T = A = = = ? = = = = = = = = = G = = G = ? = = = = C G T C = = = = = = C = = = = C = G G T = C C ? ? D ? = = = ? = = T C C = G = = = ? = = = = = = = = = T = = 0 P006 (G) = ? (T) (A) = = (C) = (T) (C) T = G A = T = = = = = = = = = = A = = G A ? ? = = T ? = = T = C = = C C D = C = G C C G = C G = = = (A) = ? (C) (C) = = (G) = (C) (T) C = C T = C = = = = = = = = = = G = = A G ? ? = = C ? = = C = T = = T A I = T = C T T A = G A = = = 0 P007 = = ? = ? A A = = = = = = = = = = = = = = = = = = = = = = = ? ? ? (I) = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? G G = = = = = = = = = = = = = = = = = = = = = = = ? ? ? (D) = = = ? = = = = = = = = = = = = = = = = = = = = = = = 0 P008 (G) = ? = = = = = ? ? ? T = G A = T = = = = = = = = = = = = = = = ? I = = T ? = = T C C = G C C D C = = = = = = = = = T ? = (A) = ? = = = = = ? ? ? C = C T = C = = = = = = = = = = = = = = = ? D = = C ? = = C T T = A T A I T = = = = = = = = = G ? = 0 P009 = = (G) = = = = C G T C ? ? ? A = T = = = = = = = = = = = = = ? ? D ? ? ? T G = = T C C ? ? ? ? D ? ? = = ? ? ? = = = T ? = = = (C) = = = = G A C T ? ? ? T = C = = = = = = = = = = = = = ? ? I ? ? ? C A = = C T T ? ? ? ? I ? ? = = ? ? ? = = = G ? = 0 P010 (A) = (G) (C) (C) = = C = T C T = ? A = T = = = = = = = ? ? ? ? ? = G A = = = T T G = = T = C = = C C D = C = G C C G = C G = = = (G) = (C) (T) (A) = = G = C T C = ? T = C = = = = = = = ? ? ? ? ? = A G = = = G C A = = C = T = = T A I = T = C T T A = G A = = = 0 P011 = = = = (A) (A) (A) = = = = T = = = = T = = = = = = = = = C A A A ? ? I ? = T T G A C T C C = = C = D ? ? = = C = = = C = = = = = = = = (C) (G) (G) = = = = C = = = = C = = = = = = = = = T G C C ? ? D ? = G C A G T C T T = = T = I ? ? = = T = = = G = = = = 0 P012 A = G C C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = G = C T A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = 0 P013 = = = = = = = = = = = C T = T = C = = = = = = = = = = = = = ? ? I ? = = = ? ? ? ? = = = = = = = ? ? = = ? ? ? = = = = = = = = = = = = = = = = = T C = A = T = = = = = = = = = = = = = ? ? D ? = = = ? ? ? ? = = = = = = = ? ? = = ? ? ? = = = = = = 0 P014 = = = = (A) (A) (A) = = = = ? ? ? ? = T = ? ? ? ? ? ? = = C A A A ? ? I ? = = T ? ? ? ? = = = = C C D ? ? = = ? ? ? = = = = = = = = = = (C) (G) (G) = = = = ? ? ? ? = C = ? ? ? ? ? ? = = T G C C ? ? D ? = = C ? ? ? ? = = = = T A I ? ? = = ? ? ? = = = = = = 0 P015 = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = T ? = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = G ? = = = = = = = = = = = = = = = = = = = = = = = = 0 P016 A (C) ? ? A A A = = = = = = = = = = = = = = = = = = = = = = = ? ? (D) ? = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = G (A) ? ? C G G = = = = = = = = = = = = = = = = = = = = = = = ? ? (I) ? = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = 0 P017 = = = = = = = C = T C T = G = A T = = = = = = = = = = (A) = = = = ? ? = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = G = C T C = C = G C = = = = = = = = = = (G) = = = = ? ? = = = = = = = = = = = = = = = = = = = = = (A) = = = = = 0 P018 ? ? ? ? = = = = = = = = = = = = = = ? ? ? ? ? = = = = A = = G = = D = = C A = = C T T = A T A I T = = = = = = = = = G ? = ? ? ? ? = = = = = = = = = = = = = = ? ? ? ? ? = = = = G = = A = = I = = T G = = T C C = G C C D C = = = = = = = = = T ? = 0 P019 = = = = A A A = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = (C) = = (G) ? = = = = = C G G = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = (A) = = (T) ? = 0 P020 A = ? = A A A = = = = = = = = = = = = = = = = = = = = = = = ? ? (D) ? = = = = = = = = = = = = = = = = = = = = = (C) = = = = = G = ? = C G G = = = = = = = = = = = = = = = = = = = = = = = ? ? (I) ? = = = = = = = = = = = = = = = = = = = = = (A) = = = = = 0 P021 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P022 ? ? ? ? = ? ? = = = = ? ? ? ? = = = = = = = = = ? ? = = = = ? ? I ? = = = = = = = = = = = = = = ? ? = = = = = = ? ? ? ? = ? ? ? ? = ? ? = = = = ? ? ? ? = = = = = = = = = ? ? = = = = ? ? D ? = = = = = = = = = = = = = = ? ? = = = = = = ? ? ? ? = 0 P023 A = = C C = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? G = = T A = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0 P024 = (A) ? ? (A) (A) (A) = = = = T = G A = T = = = = = = = = = = A = = G A ? = = T T G = = T = C = = C C D = C = G C C G = C G = = = = (C) ? ? (C) (G) (G) = = = = C = C T = C = = = = = = = = = = G = = A G ? = = G C A = = C = T = = T A I = T = C T T A = G A = = = 0 P025 = = ? (C) (C) = = C = T C T = G A = T = ? ? ? = ? ? = = = A = = ? A D ? = T T G = = T = C = = C C ? = C = G C C G = C G = ? = = = ? (T) (A) = = G = C T C = C T = C = ? ? ? = ? ? = = = G = = ? G I ? = G C A = = C = T = = T A ? = T = C T T A = G A = ? = 0 P026 (A) = (C) = A A A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = (G) = C G G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P027 = = = = = = = C G T C = T G = = = C ? G C T C C G G = A = = G = = I = = T G = = T C C = G C C D ? ? = = = = = = = = T ? = = = = = = = = G A C T = C C = = = T ? A T C A T A C = G = = A = = D = = C A = = C T T = A T A I ? ? = = = = = = = = G ? = 0 P028 = = (G) (C) (C) = = = (A) = = = = (G) (A) = = T A A T C A T A C = = = = = A = = A T = G = = T = C T = C = D = C C G C = G = C G = I D = = (C) (T) (A) = = = (G) = = = = (C) (T) = = C G G C T C C G G = = = = = G = = G G = A = = C = T G = T = I = T T C T = A = G A = D I 0 P029 = = G = C G G = = = = C = C = = C = ? ? ? ? ? ? = = = G = = ? = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = C = A A A = = = = T = G = = T = ? ? ? ? ? ? = = = A = = ? = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = 0 P030 (A) = (C) = (A) (A) (A) C = T C ? ? ? ? = = = = = = = = = = = = A = = G A = = = T T G = = T = C = = C C D = C = G C C G = C G = ? = (G) = (G) = (C) (G) (G) G = C T ? ? ? ? = = = = = = = = = = = = G = = A G = = = G C A = = C = T = = T A I = T = C T T A = G A = ? = 0 P031 = = = = = (G) (G) G = C T C = C T = C = = = = = = = = = = G = = A (G) = = = G C A G T C = = = = T A I ? ? = = T T = = = = = = = = = = = = (A) (A) C = T C T = G A = T = = = = = = = = = = A = = G (A) = = = T T G A C T = = = = C C D ? ? = = C C = = = = = = = 0 P032 (A) = = (C) (C) = = = A = = ? ? ? = = = = = = = = = = = = = A = = G = = D = T = = A C = T T = A = = = T = = = C C = = = = G = = (G) = = (T) (A) = = = G = = ? ? ? = = = = = = = = = = = = = G = = A = = I = G = = G T = C C = G = = = C = = = T T = = = = T = = 0 P033 ? (A) ? ? = G G = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? (C) ? ? = A A = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P034 = = = = A A A = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = C G G = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0 P035 = = = = A A A = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G G = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P036 (A) = (C) = = = = C = T C T = G A = T = = = = = = = = = = A = = ? ? D ? = T T G = = T = C = = C C D = C = G C C G C ? G = = = (G) = (G) = = = = G = C T C = C T = C = = = = = = = = = = G = = ? ? I ? = G C A = = C = T = = T A I = T = C T T A A ? A = = = 0 P037 (A) = = = (C) (G) (G) = = = = = = = = = = = ? ? ? ? ? ? = = T = C C ? ? D ? = T = = = = = = C = = = = = = C = G ? ? ? ? C G = = = (G) = = = (A) (A) (A) = = = = = = = = = = = ? ? ? ? ? ? = = C = A A ? ? I ? = G = = = = = = T = = = = = = T = C ? ? ? ? G A = = = 0 P038 = = (G) = = = = (C) (G) (T) (C) = T ? ? = = = G G C T = C = = = = = = = = = = = = = A G T C T T = = T A I ? ? = = T = = = = = = = = = = (C) = = = = (G) (A) (C) (T) = C ? ? = = = A A T C = T = = = = = = = = = = = = = G A C T C C = = C C D ? ? = = C = = = = = = = = 0 P039 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? I ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? D ? = = = = = = = = = = = = = = = = = = = = = C = = = = = 0 P040 = = = = = = = = = = = C = C T = C = = = = = = = = = = = = = = = = D = = C A = = C T T = A T A I T = = = = = = = = = G ? ? = = = = = = = = = = = T = G A = T = = = = = = = = = = = = = = = = I = = T G = = T C C = G C C D C = = = = = = = = = T ? ? 0 P041 A = = C = A A C = T C = = = A G = = ? ? ? ? ? ? = = = = = = G A = = = T = ? = = T = C = = C = D = C ? G C C G = C G = = = G = = T = G G G = C T = = = T A = = ? ? ? ? ? ? = = = = = = A G = = = G = ? = = C = T = = T = I = T ? C T T A = G A = = = 0 P042 = = (G) = = = = (C) (G) (T) (C) = T G A = T = = = = = = = = ? = = = = = G = = = G = = G T = T T = = = = = = = = = ? ? ? ? ? ? ? ? = = = (C) = = = = (G) (A) (C) (T) = C C T = C = = = = = = = = ? = = = = = A = = = T = = A C = C C = = = = = = = = = ? ? ? ? ? ? ? ? = 0 P043 = = (G) = = = = C G T C T = G A = T = = = = = = = = C = G = = A = ? ? A = = G = = T C C T G C = D C = ? = = T = = = = T ? D = = (C) = = = = G A C T C = C T = C = = = = = = = = G = A = = G = ? ? G = = A = = C T T G A T = I T = ? = = C = = = = G ? I 0 P044 = = (G) (C) (C) = = = = = = = = = = = = = = = = = = = = = = A = = G ? D ? = T T G = = T = C = = C C D = C = G ? ? ? ? ? ? ? = = = = (C) (T) (A) = = = = = = = = = = = = = = = = = = = = = = G = = A ? I ? = G C A = = C = T = = T A I = T = C ? ? ? ? ? ? ? = = 0 P045 (A) = (C) = = = = C = T C T = G A = T = = = = = = = = ? = A = = ? ? D ? = ? T G = = T = C = = = = = = = = = = = = = = = = = = (G) = (G) = = = = G = C T C = C T = C = = = = = = = = ? = G = = ? ? I ? = ? C A = = C = T = = = = = = = = = = = = = = = = = = 0 P046 = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P047 A = C = (A) (A) (A) = = = = (C) (T) ? (T) = (C) = = = = = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = G = G = (C) (G) (G) = = = = (T) (C) ? (A) = (T) = = = = = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = 0 P048 = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P049 = = = = A A A C G T C T = G A = T ? = = = = = = = = = = = = = = = I = = T G = = T C C = G C C D C = = = = = = = = = T ? = = = = = C G G G A C T C = C T = C ? = = = = = = = = = = = = = = = D = = C A = = C T T = A T A I T = = = = = = = = = G ? = 0 P050 = = (G) = (C) (G) (G) = = = = = = = A G = C G ? ? T C ? G G = = = = G = = = G = T = = = = = = G = = C = = = T = = ? ? = ? ? ? ? ? = = (C) = (A) (A) (A) = = = = = = = T A = T A ? ? C A ? A C = = = = A = = = A = C = = = = = = T = = A = = = C = = ? ? = ? ? ? ? ? 0 P051 (A) = (C) = (A) (A) (A) C G T C T = G A = T = ? = = = = = = = = A = = ? ? D ? = = = = = = = = = = = = C = = = = = = = = C = = = = = (G) = (G) = (C) (G) (G) G A C T C = C T = C = ? = = = = = = = = G = = ? ? I ? = = = = = = = = = = = = A = = = = = = = = A = = = = = 0 P052 = = = = = = = = = = = C T = T = C = = = = = = = = = = = = = ? ? I ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = T C = A = T = = = = = = = = = = = = = ? ? D ? = = = = = = = = = = = = = = = = = = = = = C = = = = = 0 P053 (A) = (C) = = = = = = = = C = C T = C T A A T C A T A C = G = = ? ? I ? A = C = = = = = = T = = A = = = C = = T = = = = = I D (G) = (G) = = = = = = = = T = G A = T C G G C T C C G G = A = = ? ? D ? G = T = = = = = = G = = C = = = T = = C = = = = = D I 0 P054 = = (G) (C) (C) = = = = = = = = ? = = = = = = = = = = = = = = = = ? ? D ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) (T) (A) = = = = = = = = ? = = = = = = = = = = = = = = = = ? ? I ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P055 (A) = = (C) = (A) (A) C = T C ? ? ? A = T = = = = = = = = = = = = = ? ? D ? = = T G = = T C C = G C C D C = = = = = = C = = T ? = (G) = = (T) = (G) (G) G = C T ? ? ? T = C = = = = = = = = = = = = = ? ? I ? = = C A = = C T T = A T A I T = = = = = = A = = G ? = 0 P056 = = (C) = (C) = = = (A) = = ? ? ? = = = = = = = = = = = = = = = = = A = = = T T = = = = = = = = = = = = = = = = = = = C G = = = = = (G) = (A) = = = (G) = = ? ? ? = = = = = = = = = = = = = = = = = G = = = G C = = = = = = = = = = = = = = = = = = = G A = = = 0 P057 = = ? ? = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = ? ? = = = G ? = = = ? ? = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = ? ? = = = T ? = 0 P058 (A) = = (C) = (A) (A) = = = = C T = = = C = ? ? ? ? ? ? = = = G = = A = = = ? ? = ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = ? ? ? ? ? (G) = = (T) = (G) (G) = = = = T C = = = T = ? ? ? ? ? ? = = = A = = G = = = ? ? = ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = ? ? ? ? ? 0 P059 = A ? ? C = = = A = = = = = A G = = ? ? ? ? ? ? = = C = A A G = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = C ? ? A = = = G = = = = = T A = = ? ? ? ? ? ? = = T = C C A = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? 0 P060 ? ? ? ? = = = = = = = C = C T = C T A A T C A T A C = G = = ? ? I ? A = C = = = = = = T = = A = = = C = = T = = = = = I D ? ? ? ? = = = = = = = T = G A = T C G G C T C C G G = A = = ? ? D ? G = T = = = = = = G = = C = = = T = = C = = = = = D I 0 P061 = = = = = = = = ? ? ? = C = A = T = ? ? ? ? ? ? = = C = A A G = ? ? ? ? ? = = = = = T G = = = I ? = = = C = = = = = G ? = = = = = = = = = ? ? ? = T = T = C = ? ? ? ? ? ? = = T = C C A = ? ? ? ? ? = = = = = C T = = = D ? = = = T = = = = = T ? = 0 P062 = = G = = = = C G T C ? ? ? ? = T = = = = = = = ? = = G = = A G = I = G = = = = = C = = G = = = C T = C T T A = ? ? ? ? = = = C = = = = G A C T ? ? ? ? = C = = = = = = = ? = = A = = G A = D = T = = = = = T = = A = = = T C = G C C G = ? ? ? ? = 0 P063 A = = C C = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? G = = T A = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0 P064 = (A) ? ? = = = = = = = = = ? (A) = (T) = G G C T = C = = ? ? ? ? G = = = = = C A = = C T T = A T A I T = = = = = = = ? = ? ? = = (C) ? ? = = = = = = = = = ? (T) = (C) = A A T C = T = = ? ? ? ? A = = = = = T G = = T C C = G C C D C = = = = = = = ? = ? ? = 0 P065 = = (G) = (C) ? ? G A C T = C C = G = = ? ? ? ? = ? = = = = = = G = ? = = = C G A C T C C = = C = D ? ? = = C = = = = = = = = = = (C) = (A) ? ? C G T C = T G = A = = ? ? ? ? = ? = = = = = = A = ? = = = T A G T C T T = = T = I ? ? = = T = = = = = = = = 0 P066 = = = = = = = = = = = C T = T = C = = ? ? = = = = = = = = = = = I ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = T C = A = T = = ? ? = = = = = = = = = = = D ? = = = = = = = = = = = = = = = = = = = = = C = = = = = 0 P067 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P068 = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P069 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? I ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? D ? = = = = = = = = = = = = = = = = = = = = = C = = = = = 0 P070 = = (G) (C) (C) = = = = = = = = ? = = = = = = = = = = = = = A = = G = D ? = = = = = = = = = = = = C = = = = = = = = C = = = = ? = = (C) (T) (A) = = = = = = = = ? = = = = = = = = = = = = = G = = A = I ? = = = = = = = = = = = = A = = = = = = = = A = = = = ? 0 P071 (A) = (C) = (A) (A) (A) = = = = T = = A = T = G G C T = C = = C A A A G ? I ? = = T = = = = = = = = C C D ? ? = = = = = = = = = = = (G) = (G) = (C) (G) (G) = = = = C = = T = C = A A T C = T = = T G C C A ? D ? = = C = = = = = = = = T A I ? ? = = = = = = = = = = = 0 P072 = = (G) = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P073 ? ? ? ? (C) ? ? = A = = ? ? ? A = T = = = = = = = = = = A = = G ? D ? = T T G = = T = C = = C C D ? ? = G C C G = C G = ? = ? ? ? ? (A) ? ? = G = = ? ? ? T = C = = = = = = = = = = G = = A ? I ? = G C A = = C = T = = T A I ? ? = C T T A = G A = ? = 0 P074 (A) (C) ? ? (A) (A) (A) = = = = = = = = = = ? = = = = = = G G = A = = ? ? D ? G = T = = = = = = G = = C = = = T = = C = = = = = D I (G) (A) ? ? (C) (G) (G) = = = = = = = = = = ? = = = = = = A C = G = = ? ? I ? A = C = = = = = = T = = A = = = C = = T = = = = = I D 0 P075 (A) = (C) = A A A = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = (G) = C G G = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P076 (A) = ? = (A) (A) (A) = = = = T = = A = T ? ? ? ? ? ? ? = = = A = = G = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = (G) = ? = (C) (G) (G) = = = = C = = T = C ? ? ? ? ? ? ? = = = G = = A = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = 0 P077 (A) = (C) = = = = (C) (G) ? ? T = G A = T = A A T C A T A C = = = = = = ? = A = C = = = = = = T = = = = = = ? = = T = = = = = ? D (G) = (G) = = = = (G) (A) ? ? C = C T = C = G G C T C C G G = = = = = = ? = G = T = = = = = = G = = = = = = ? = = C = = = = = ? I 0 P078 = = (G) = = = = C G T C ? ? ? = = = = = = = = = = = = = = = = = ? (D) ? = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = (C) = = = = G A C T ? ? ? = = = = = = = = = = = = = = = = = ? (I) ? = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? 0 P079 = = (G) = (C) (G) (G) = = = = = = = = = = ? A A T C A T A C = G = ? A = = I A = = G = = T C C T G C = D C = C = = T = = = = T = D = = (C) = (A) (A) (A) = = = = = = = = = = ? G G C T C C G G = A = ? G = = D G = = A = = C T T G A T = I T = T = = C = = = = G = I 0 P080 = = = = (A) (A) (A) = (G) = = ? ? ? ? = = = G G C T = C = = = = = = = = ? = = = = = = = = = = = = = (A) = = = = = = = = = ? = = = = = = = = (C) (G) (G) = (A) = = ? ? ? ? = = = A A T C = T = = = = = = = = ? = = = = = = = = = = = = = (C) = = = = = = = = = ? = = = = 0 P081 (A) = = (C) = (A) (A) (C) = (T) (C) T = G A = T C G G C T C C G ? ? ? ? ? G = = = G = T = = = = = = G = = C = = = T = = C = = = = = D I (G) = = (T) = (G) (G) (G) = (C) (T) C = C T = C T A A T C A T A ? ? ? ? ? A = = = A = C = = = = = = T = = A = = = C = = T = = = = = I D 0 P082 ? ? ? ? (C) = = C = ? ? T = G A = T = = = = = = = = = = A = = ? ? D ? = T T ? = = T = C = = C C D ? ? = G C C G = C G = = = ? ? ? ? (A) = = G = ? ? C = C T = C = = = = = = = = = = G = = ? ? I ? = G C ? = = C = T = = T A I ? ? = C T T A = G A = = = 0 P083 (A) = (G) (C) (C) = = (C) = (T) (C) = ? ? = = = = = = = = = = = = = = = = = A ? ? ? ? ? ? = = T = C = = C = D = C = G C C G = C G = = = (G) = (C) (T) (A) = = (G) = (C) (T) = ? ? = = = = = = = = = = = = = = = = = G ? ? ? ? ? ? = = C = T = = T = I = T = C T T A = G A = = = 0 P084 = = (G) (C) (C) = = C = T C ? ? ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = (C) (T) (A) = = G = C T ? ? ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = 0 P085 (A) = = = = = = = = = = T = G A = T = G G C T = C = = C A A A ? ? ? ? ? ? ? = = = = = = = = C C D ? ? = = = = = = = = = = = (G) = = = = = = = = = = C = C T = C = A A T C = T = = T G C C ? ? ? ? ? ? ? = = = = = = = = T A I ? ? = = = = = = = = = = = 0 P086 A = C = (A) = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = G = (C) = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P087 = = (G) = = = = C G T C = = = = = = C = = = (T) = = = = ? ? ? ? A G ? ? ? ? ? ? = = C = T = = T A ? = T ? C T T A = G A = = = = = (C) = = = = G A C T = = = = = = T = = = (C) = = = = ? ? ? ? G A ? ? ? ? ? ? = = T = C = = C C ? = C ? G C C G = C G = = = 0 P088 (G) (A) ? ? (A) = = = = ? ? C = C T = C = = = = = = = = = = G = = A ? ? ? = = ? = = = = = = = = = A = = = ? = = = = A (G) = = = = (A) (C) ? ? (C) = = = = ? ? T = G A = T = = = = = = = = = = A = = G ? ? ? = = ? = = = = = = = = = C = = = ? = = = = C (C) = = = = 0 P089 = A ? ? ? = = = = C T = C = A G = = ? ? ? ? ? ? = = = = = = G = = = = = T G = = T C = ? ? ? ? D ? = C = C = = = = = = ? = = C ? ? ? = = = = T C = T = T A = = ? ? ? ? ? ? = = = = = = A = = = = = C A = = C T = ? ? ? ? I ? = T = T = = = = = = ? = 0 P090 = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? I ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? D ? = = = = = = = = = = = = = = = = = = = = = C = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS 0.83 0.83 ? ? = = = ? ? ? ? 1.00 = 1.00 1.00 = 1.00 = = = = ? = = = = = 1.00 = = ? ? ? ? = 1.00 1.00 ? = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = ? ? ? = = = = = = = 1.00 ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 = = ? 1.00 1.00 = = ? ? ? ? ? ? = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 ? = = = = = = = = = = = = 1.00 = = = = = = = = = = = = ? = ? = = 0.60 = = = = ? ? ? = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = 1.00 ? = = 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 ? ? = = 1.00 = = = 1.00 1.00 = = = 0.93 = ? = = = = 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 ? ? 1.00 ? = = = ? = = 1.00 1.00 1.00 = 1.00 = = = ? = = = = = = = = = 1.00 = = 0.51 = ? 0.50 0.50 = = 0.53 = 0.53 0.53 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = 1.00 1.00 ? ? = = 1.00 ? = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = ? = ? 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? ? ? 0.72 = = = ? = = = = = = = = = = = = = = = = = = = = = = = 0.52 = ? = = = = = ? ? ? 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = ? 1.00 = = 1.00 ? = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 ? = = = 0.83 = = = = 0.97 0.97 0.97 0.97 ? ? ? 1.00 = 1.00 = = = = = = = = = = = = = ? ? 1.00 ? ? ? 1.00 1.00 = = 1.00 1.00 1.00 ? ? ? ? 1.00 ? ? = = ? ? ? = = = 1.00 ? = 0.84 = 0.86 0.87 0.87 = = 0.96 = 0.96 0.96 0.99 = ? 0.99 = 0.99 = = = = = = = ? ? ? ? ? = 1.00 1.00 = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = = = 0.78 0.78 0.78 = = = = 0.97 = = = = 0.97 = = = = = = = = = 1.00 1.00 1.00 1.00 ? ? 1.00 ? = 1.00 1.00 0.92 0.92 0.92 0.92 0.92 0.92 = = 0.92 = 0.92 ? ? = = 0.92 = = = 1.00 = = = = 0.98 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = ? ? 0.95 ? = = = ? ? ? ? = = = = = = = ? ? = = ? ? ? = = = = = = = = = = 0.65 0.65 0.65 = = = = ? ? ? ? = 1.00 = ? ? ? ? ? ? = = 1.00 1.00 1.00 1.00 ? ? 1.00 ? = = 1.00 ? ? ? ? = = = = 1.00 1.00 1.00 ? ? = = ? ? ? = = = = = = = = 0.54 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = 1.00 ? = = = = = = = = = = = = = = = = = = = = = = = = 0.93 0.89 ? ? 0.99 0.99 0.99 = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.87 ? = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = 0.96 = 0.96 0.96 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = 0.89 = = = = ? ? = = = = = = = = = = = = = = = = = = = = = 0.54 = = = = = ? ? ? ? = = = = = = = = = = = = = = ? ? ? ? ? = = = = 1.00 = = 1.00 = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 ? = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = 0.82 = = 0.82 ? = 0.96 = ? = 0.92 0.92 0.92 = = = = = = = = = = = = = = = = = = = = = = = ? ? 0.67 ? = = = = = = = = = = = = = = = = = = = = = 0.68 = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = ? ? = = = = ? ? ? ? = = = = = = = = = ? ? = = = = ? ? 1.00 ? = = = = = = = = = = = = = = ? ? = = = = = = ? ? ? ? = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 0.69 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.55 ? ? 0.55 0.55 0.55 = = = = 0.99 = 0.99 0.99 = 0.99 = = = = = = = = = = 1.00 = = 1.00 1.00 ? = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = ? 0.84 0.84 = = 0.99 = 0.99 0.99 1.00 = 1.00 1.00 = 1.00 = ? ? ? = ? ? = = = 1.00 = = ? 1.00 1.00 ? = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 ? = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = ? = 0.80 = 0.81 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 ? ? = = = = = = = = 1.00 ? = = = 0.73 0.73 0.73 = = = 0.88 = = = = 0.71 0.69 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = 0.92 = 0.91 0.91 0.91 = = = = 1.00 = 1.00 = = 1.00 = ? ? ? ? ? ? = = = 1.00 = = ? = = = = = = = = = = = = = = = 0.64 = = = = = = = = = = = = = = 0.79 = 0.80 = 0.79 0.79 0.79 0.99 = 0.99 0.99 ? ? ? ? = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = ? = = = = = = 0.75 0.75 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = 1.00 0.74 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 ? ? = = 1.00 1.00 = = = = = = = 0.62 = = 0.62 0.62 = = = 0.90 = = ? ? ? = = = = = = = = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 1.00 = = = = 1.00 = = ? 0.58 ? ? = 1.00 1.00 = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = 0.76 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = 1.00 1.00 1.00 = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 = 0.55 = = = = 0.97 = 0.97 0.97 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = ? ? 1.00 ? = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = = 0.59 = = = 0.65 0.65 0.65 = = = = = = = = = = = ? ? ? ? ? ? = = 1.00 = 1.00 1.00 ? ? 1.00 ? = 1.00 = = = = = = 1.00 = = = = = = 1.00 = 1.00 ? ? ? ? 1.00 1.00 = = = = = 0.78 = = = = 0.87 0.87 0.87 0.87 = 1.00 ? ? = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 ? ? = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? 1.00 ? = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 ? ? 0.96 = = 0.96 = 0.96 0.96 0.96 = 0.96 0.96 = = = 1.00 1.00 = = ? ? ? ? ? ? = = = = = = 1.00 1.00 = = = 1.00 = ? = = 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = 0.55 = = = = 0.81 0.81 0.81 0.81 = 0.91 0.91 0.94 = 0.94 = = = = = = = = ? = = = = = 1.00 = = = 1.00 = = 1.00 1.00 = 1.00 1.00 = = = = = = = = = ? ? ? ? ? ? ? ? = = = 0.78 = = = = 0.95 0.95 0.95 0.95 0.95 = 0.95 0.95 = 0.95 = = = = = = = = 1.00 = 1.00 = = 1.00 = ? ? 1.00 = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = ? = = 1.00 = = = = 1.00 ? 1.00 = = 0.55 0.55 0.55 = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 ? 1.00 ? = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 ? ? ? ? ? ? ? = = 0.56 = 0.56 = = = = 0.99 = 0.99 0.99 1.00 = 1.00 1.00 = 1.00 = = = = = = = = ? = 1.00 = = ? ? 1.00 ? = ? 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? ? = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.96 = 0.96 = 0.88 0.88 0.88 = = = = 0.83 0.83 ? 0.83 = 0.83 = = = = = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.90 0.90 0.90 0.99 0.99 0.99 0.99 1.00 = 1.00 1.00 = 1.00 ? = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = 1.00 ? = = = 0.68 = 0.68 0.68 0.68 = = = = = = = 1.00 1.00 = 1.00 1.00 ? ? 1.00 1.00 ? 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = = 1.00 = = ? ? = ? ? ? ? ? 0.84 = 0.84 = 0.87 0.87 0.87 0.94 0.94 0.94 0.94 0.99 = 0.99 0.99 = 0.99 = ? = = = = = = = = 0.99 = = ? ? 0.99 ? = = = = = = = = = = = = 0.99 = = = = = = = = 0.99 = = = = = = = = = = = = = = = = 0.97 0.97 = 0.97 = 0.97 = = = = = = = = = = = = = ? ? 1.00 ? = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = 0.56 = 0.56 = = = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = ? ? 1.00 ? 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = = 1.00 = = 1.00 = = = = = 1.00 1.00 = = 0.55 0.55 0.55 = = = = = = = = ? = = = = = = = = = = = = = = = = ? ? 1.00 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.90 = = 0.90 = 0.90 0.90 0.94 = 0.94 0.94 ? ? ? 0.99 = 0.99 = = = = = = = = = = = = = ? ? 1.00 ? = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = 1.00 ? = = = 0.52 = 0.51 = = = 0.57 = = ? ? ? = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = ? ? = = 0.58 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = ? ? = = = 0.95 ? = 0.55 = = 0.55 = 0.55 0.55 = = = = 1.00 1.00 = = = 1.00 = ? ? ? ? ? ? = = = 1.00 = = 1.00 = = = ? ? = ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? = ? ? ? ? ? = 1.00 ? ? 1.00 = = = 0.99 = = = = = 1.00 1.00 = = ? ? ? ? ? ? = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? ? ? ? ? = = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = ? ? 1.00 ? 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = = 1.00 = = 1.00 = = = = = 1.00 1.00 = = = = = = = = ? ? ? = 1.00 = 1.00 = 1.00 = ? ? ? ? ? ? = = 1.00 = 1.00 1.00 1.00 = ? ? ? ? ? = = = = = 1.00 1.00 = = = 1.00 ? = = = 1.00 = = = = = 1.00 ? = = = 1.00 = = = = 1.00 1.00 1.00 1.00 ? ? ? ? = 1.00 = = = = = = = ? = = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = ? ? ? ? = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 0.52 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.59 ? ? = = = = = = = = = ? 0.64 = 0.64 = 1.00 1.00 1.00 1.00 = 1.00 = = ? ? ? ? 1.00 = = = = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = ? = ? ? = = = 0.53 = 0.53 ? ? 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = ? ? ? ? = ? = = = = = = 1.00 = ? = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 ? ? = = 1.00 = = = = = = = = = = = = = = = = = = = 0.97 0.97 = 0.97 = 0.97 = = ? ? = = = = = = = = = = = 1.00 ? = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 ? = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = 0.52 0.52 0.52 = = = = = = = = ? = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 ? = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = ? 0.79 = 0.79 = 0.70 0.70 0.70 = = = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 ? 1.00 ? = = 1.00 = = = = = = = = 1.00 1.00 1.00 ? ? = = = = = = = = = = = = = 0.81 = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? 0.87 ? ? = 0.97 = = ? ? ? 1.00 = 1.00 = = = = = = = = = = 1.00 = = 1.00 ? 1.00 ? = 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 1.00 1.00 ? ? = 1.00 1.00 1.00 1.00 = 1.00 1.00 = ? = 0.55 0.64 ? ? 0.57 0.57 0.57 = = = = = = = = = = ? = = = = = = 1.00 1.00 = 1.00 = = ? ? 1.00 ? 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = = 1.00 = = 1.00 = = = = = 1.00 1.00 0.83 = 0.83 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 = ? = 0.62 0.62 0.62 = = = = 1.00 = = 1.00 = 1.00 ? ? ? ? ? ? ? = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = 0.80 = 0.79 = = = = 0.81 0.81 ? ? 0.90 = 0.90 0.90 = 0.90 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = ? = 1.00 = 1.00 = = = = = = 1.00 = = = = = = ? = = 1.00 = = = = = ? 1.00 = = 0.73 = = = = 1.00 1.00 1.00 1.00 ? ? ? = = = = = = = = = = = = = = = = = ? 0.60 ? = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = 0.56 = 0.58 0.58 0.58 = = = = = = = = = = ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = ? 1.00 = = 1.00 1.00 = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = 1.00 = = = = 0.67 0.67 0.67 = 0.76 = = ? ? ? ? = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = ? = = = = = = = = = = = = = 0.72 = = = = = = = = = ? = = = = 0.78 = = 0.78 = 0.78 0.78 0.85 = 0.85 0.85 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? ? ? 1.00 = = = 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = = 1.00 = = 1.00 = = = = = 1.00 1.00 ? ? ? ? 0.89 = = 1.00 = ? ? 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = ? ? 1.00 ? = 1.00 1.00 ? = = 1.00 = 1.00 = = 1.00 1.00 1.00 ? ? = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 0.80 = 0.83 0.83 0.83 = = 0.87 = 0.87 0.87 = ? ? = = = = = = = = = = = = = = = = = 1.00 ? ? ? ? ? ? = = 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = = 0.85 0.85 0.85 = = 1.00 = 1.00 1.00 ? ? ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = 0.83 = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 ? ? ? ? ? ? ? = = = = = = = = 1.00 1.00 1.00 ? ? = = = = = = = = = = = 0.95 = 1.00 = 0.77 = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.73 = = = = 0.95 0.95 0.95 0.95 = = = = = = 0.98 = = = 0.53 = = = = ? ? ? ? 1.00 1.00 ? ? ? ? ? ? = = 1.00 = 1.00 = = 1.00 1.00 ? = 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 0.57 0.57 ? ? 0.53 = = = = ? ? 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = 1.00 ? ? ? = = ? = = = = = = = = = 1.00 = = = ? = = = = 1.00 0.59 = = = = = 1.00 ? ? ? = = = = 1.00 1.00 = 1.00 = 1.00 1.00 = = ? ? ? ? ? ? = = = = = = 1.00 = = = = = 1.00 1.00 = = 1.00 1.00 = ? ? ? ? 1.00 ? = 1.00 = 1.00 = = = = = = ? = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 ? = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = END PHASEPROBS