Site Allele1 Total-pop Allele2 Total-pop 000096 A 2 G 168 000461 A 1 G 169 000595 G 6 T 164 000603 A 4 G 166 000691 A 4 C 164 000785 G 50 A 118 000788 G 1 A 169 000823 C 10 A 160 000830 A 1 G 169 000831 A 1 C 169 000936 A 1 G 135 001281 A 3 G 121 001340 T 5 G 123 001391 G 41 C 89 001434 T 19 C 129 001442 A 1 G 147 001515 C 2 T 146 001872 G 1 C 179 001893 + 1 - 179 002041 A 75 C 97 002047 C 1 G 173 002078 G 2 C 172 002222 T 1 C 169 002283 T 4 G 172 002434 C 3 T 173 002637 T 1 C 179 002692 T 1 C 179 003050 A 4 G 168 003191 A 47 G 127 003236 A 48 G 126 003428 T 1 C 161 003468 A 1 G 173 003481 C 1 A 175 003607 T 7 A 169 003751 - 3 + 171 003893 T 1 C 155 004061 T 1 G 171 004064 A 1 G 171 004227 A 3 G 165 023023 C 1 G 177 023105 G 1 A 177 023131 G 63 C 115 023132 A 1 G 177 023191 T 2 C 176 023284 C 1 T 173 023286 A 36 G 138 023299 C 57 T 111 023300 T 57 C 111 026166 T 76 C 76 026167 A 1 G 151 026357 A 1 C 145 026398 T 13 C 135 026433 T 1 C 107 026443 C 47 G 83 026494 T 1 C 89 026513 T 66 A 98 026791 G 9 A 171 026798 C 87 T 93 026880 C 1 T 179 026883 G 1 A 179 027124 G 1 C 163 027174 + 1 - 163 027207 - 1 + 161 027301 T 12 C 158 027398 T 1 C 173 027505 T 1 G 177 027598 T 3 A 173 027613 A 1 G 175 028121 A 17 G 129 028152 A 17 G 127 028153 T 17 C 127 028203 C 19 T 131 028213 A 11 C 141 028410 T 17 C 133 031479 A 14 G 160 031524 A 8 G 166 031603 T 8 C 164 031771 C 1 G 173 031809 T 2 C 172 031904 T 4 C 172 032018 A 8 C 170 032065 T 1 C 175 032090 C 8 T 164 032170 C 14 G 156 032396 T 1 C 173 032403 G 8 A 166 032555 C 8 T 160 032639 T 9 C 161 032646 G 78 A 92 032691 C 9 A 161 032781 C 1 G 173 032821 C 2 G 172 032840 C 9 A 163 032885 A 2 T 168 033093 A 2 G 172 033291 T 2 C 168 033483 A 56 G 66 033534 T 1 G 101 033757 A 1 G 103 033849 G 20 A 94 033924 - 33 + 99 034124 - 19 + 75 034386 A 13 G 151 034436 G 24 T 138 034645 T 6 C 156 034750 T 3 A 161 034799 C 1 T 159 034803 C 6 T 150 034930 T 6 A 162 034948 C 6 G 164 035012 C 62 T 102 035023 G 1 A 165 036502 A 41 G 111 036544 G 9 A 165 036600 T 9 C 165 036610 C 50 T 124 036817 T 25 C 153 036895 A 1 G 177 036904 T 46 C 132 037078 T 14 G 160 037181 T 1 C 173 037182 A 16 G 158 037201 T 51 C 123 037209 A 82 C 92 037222 + 52 - 122 037747 T 4 C 144 037855 T 12 C 132 037881 A 2 C 142 037967 - 2 + 148 038000 T 20 C 130 038336 C 13 T 153 038490 A 1 G 169 038556 T 1 C 165 038843 C 22 G 156 038867 A 1 G 177 038889 C 1 T 177 038906 A 2 G 176 038983 - 1 + 163 039075 C 1 A 179 039304 T 1 C 167 039436 T 30 C 132 039440 T 34 C 124 039481 A 20 G 138 039537 A 6 G 148 039586 C 15 A 159 039787 G 1 A 171 039897 G 2 T 158 040692 G 23 C 135 040700 + 2 - 162 040708 A 22 G 142 040731 G 14 T 146 040758 G 2 A 160 040861 T 1 C 143 040962 G 7 A 141 041288 G 2 A 136 041339 + 11 - 123 041379 - 3 + 139 041788 T 1 A 155 042094 - 3 + 149 042098 - 12 + 150 042224 A 1 G 167 042225 T 1 C 167 042231 A 2 G 166 Note: Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001893: GGGGCGGGCC 003751: ACAAGGATG 027174: G 027207: tcc 033924: tgggggg 034124: tcc 037222: AGA 037967: CG 038983: actgagatcgcaccactgcactttagcctgggcgacagagcaagactccatctcaaaaaaaaggtgtaatgtgaaccaaaacgagtagtcaaaaaagggggggaactgtctgaaatcttttccagagcacatctgtcccataaccaggtattacaagtcacagtctaaaggctgggcatggtggctcaagcctgtaatcccagcgatttgggaagcagaagcagtgggattgcttgaggccaggagtttgagacaaaactgagcaacatggcgagaccctgtctctaaaaaatttataaaaataattagctgagggccaggcgcggtggctcacgcctgtaatcccagcactttgggaggccaaggcaggcggatcatgaagtcaggagttcaagaccagcctggccaagatggtgaaaccccgtttctactaaaaatacaaaaaaaattagcCgggtgtggtggcgggcgcctgtaatcccagctactcaggaggctGaggcaggagaatcgcttgaaccctggtggcagaggttgcagtga 040700: TGGAG 041339: ATCT 041379: A 042094: cttt 042098: aa