************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 bcl2x.phase.inp bcl2x.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST bcl2x.phase.out_freqs : haplotype frequency estimates bcl2x.phase.out_pairs : most likely haplotype pairs for each individual bcl2x.phase.out_recom : estimates of recombination parameters bcl2x.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 90 Number of Loci: 62 Positions of loci: 105 1063 1978 26585 32880 34018 34530 34882 46629 47213 60430 68201 68788 69114 69172 77588 78086 78816 82431 82594 82898 82971 82980 82996 94588 95191 95486 112619 113499 113513 125371 134994 135199 136302 136313 136437 136448 141791 142359 159063 159296 159499 163533 174453 174486 174491 174547 174958 180190 180216 180482 180674 180716 180835 180873 181339 191553 192020 192440 193439 197096 197097 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file bcl2x.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 AATCAIGITGAGTATITTGGTGCITTTGACCGCCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 2 AATCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 3 AATCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGATITDGACGACTGAAGGGATA 1.000000 4 AATCAIGITGAGTATITTTGTCCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 5 AATCAIGICGTGTATITTGGTGCITTTTACAATCGGTAGDGACDCDGGCGTCCGGAGGGATA 1.000000 6 AATCAIGICGTGTATITTTGTCCITTTTACAATCGGTGCIACCICIGGCGTCCGGGGGGATA 1.000000 7 AATCAIGICGTGCCTITTGGTGCITTTTACCGCCGGTAGDGATITDGACGACTGAAGGGATA 1.000000 8 AATCAIGDTGAGTATDGTGGTGCICTTTACCATCGGTGCIACCITDCAAAATCAAAGGAATA 1.000000 9 AATCAIGDTGAGTATITTGGTGCITTTTACAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 10 AATCAIGDTGAGTATITTGGTGCITTTTACAATCGGTGCIACCICIGGCGTCCGGGGGGATA 1.000000 11 AATCAIGDTGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACCGAAAAGGCT 1.000000 12 AATCAIGDTGAGCCTIGCGGTCADTTTTACCGCCGGTAGDGACICIGGCGTCCGGGGGGATA 1.000000 13 AATCAIGDTGTGTATITTTGTCCITTTTACAATCGGTGCIACCICIGGCGTCCGGGGGGATA 2.000000 14 AATCAIGDCGTGTATITTGGTGCITTTTACCGCCGGTGCIACCITDGACGACTGAAGGGATA 1.000000 15 AATCAIGDCGTGTATITTGGTGCITTTTCACGCTCACAGDGCTITDGACGACTGAAGGGATA 1.000000 16 AATCADGDTGTGCCTIGCGGTCADTTTTCAAATTCACGCIACTITDGAAGACCAAAGGGACT 1.000000 17 AATCGIADTGAGTATITTTGTCCITTTTACCGCCGGTAGDGCCDCDGGCGTCCGAAGGAATA 1.000000 18 AATCGIADTGTGTATDGTTGTCCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 19 AATCGIADTGTGTATITTGGTGCITTTTACAATCGGTGCIACTITDGACGACTGAAGGGATA 1.000000 20 AATCGIADTGTGTATITTGGTGCITTTTACAATCGGTGGDGATITDGACGACTGAAGGGATA 1.000000 21 AATCGIADTGTGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 22 AATCGIADTGTGTATITTGGTGCITAATACAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 23 AATCGIADTGTGTATITTTGTCCITTTTACCGCCGGTAGIACCITDGACGACTGAAGGGATA 1.000000 24 AATCGIADTGTGTATITTTGTGCITTTTACCGCCGGTAGIACCITDGACGACTGAAGGGATA 1.000000 25 AATCGIADCGTGTATITTGGTGCICTATACCGCCGGTAGDGCCDCDGGCGTCCGGAGGGATA 1.000000 26 AATCGIADCGTGTATITTGGTGCICAATACCGCCGGTAGDGCTITDCAAAATCAAAGGAATA 1.000000 27 AATCGIADCGTGTATITTGGTGCICAATACCGCCGGTAGDGCTITDGACGACCGAAAGGACT 1.000000 28 AATCGIADCGTGTATITTTGCCCITTTTACAATCGGTGCIACTITDGACGACTGAAGGGATA 1.000000 29 AATTGIADCGTGTATITTTGCCCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 30 AGTCAIGITGAGCCTIGCGGTCADTTTTACCGCCGGTAGDGATITDGACGACTGAAGGGATA 1.000000 31 AGTCAIGITGAGCCTITTTGTCADTTTTACCGCCGGTAGDGCCDCDGGCGTCCGAAGGGATA 1.000000 32 AGTCAIGDTGAGTACDGTGGTGCICAATACAATCGGTAGDGCCICIGGCGTCCGGGGGGATA 1.000000 33 AGTCAIGDTGAGTACDGTGGTGCICAATACCGCCGGTGGIACCICIGGCGTCCGGGGGGATA 1.000000 34 AGTCGIADTGTGTATITTTGCCCITTTTACCGCCGGTAGDGATICIGGCGTCCGGGGGGATA 1.000000 35 AGTCGIADCGTGTATITTGGTGCICAATACCGCCGGTGCIACCITDGACGACTGAAGGGATA 1.000000 36 AGTTAIAITAAGTATITTTGTCCITTTTACCGCCGGTAGIACCITDGACGACTGAAGGGATA 1.000000 37 AGTTAIAITAAGTATITTTGTCCITTTTACCGCCGGTAGDGCTICIGGCGTCCGGGGGGATA 1.000000 38 AGTTAIAITATGTACDGTGATGCITTTTACAACCGGTGCDGATITDCAAAATCAAAAAGGCT 1.000000 39 AGTTAIGITAAGTATIGCGGTCADTTTTACAATCGGTGGIACCICIGGCGTCCGGGGGGATA 1.000000 40 AGTTAIGITGAGTATITTGGTGCITTTTACAATCGGTAGDGCCITDGACGACCGAAGGGGTA 1.000000 41 AGTTAIGITGAGTATITTGGTGCITTTTACAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 42 AGTTAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACCGAAGGAATA 2.000000 43 AGTTAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAAAGGCT 1.000000 44 AGTTAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 45 AGTTAIGITGAGTATITTGGTGCICAATACCGCCGGTGCIACTITDCGAAACCAAAGGAATA 1.000000 46 AGTTAIGITGAGTACDGTGGTGCICAATACAATCGGTGGIACCITDGACGACTGAAGGAATA 1.000000 47 AGTTAIGITGAGTACDGTGGTGCICAATCAAATCGGTAGIACTITDGACGACTGAAGGGATA 1.000000 48 AGTTAIGITGAGTACITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAAAGGCT 1.000000 49 AGTTAIGICGTGTATDGTTGCCCITTTTACAATTCACAGDGCTICIGGCGTCCGGGGGGATA 1.000000 50 AGTTAIGICGTGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 51 AGTTAIGICGTGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAAAGGCT 1.000000 52 AGTTAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGATA 2.000000 53 AGTTAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGCCICIGGCGTCCGGGGGAATA 2.000000 54 AGTTAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDCAAAATCAAAGGAATA 1.000000 55 AGTTAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 2.000000 56 AGTTAIGICGTGTATITTTGCCCITTTGACAATCGGTAGDGCCITDGACGACCGAAGGGGTA 1.000000 57 AGTTAIGICGTGTATITTTGCCCITTTTACAATCGGTAGDGCCICIGGCGTCCGGGGGGATA 1.000000 58 AGTTAIGDTGAGTATITTGGTGCITTTGACAATCGGTAGDGATDCDGGCGTCCGGAGGGATA 1.000000 59 AGTTAIGDTGAGTATITTGGTGCITTTTACAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 60 AGTTAIGDTGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGGTA 1.000000 61 AGTTAIGDTGAGTATITTGGTGCITTTTCAAATCGGTGCIACCICIGGCGTCCGGGGGGATA 1.000000 62 AGTTAIGDTGAGTATITTTGCCCITTTTACCGCCGGTAGDGATDCDGGCGTCCGGAGGGATA 1.000000 63 AGTTAIGDTGAGTACDGTGGTGCICAATACAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 64 AGTTAIGDTGAGTACDGTTGTCCITTTTCAAATCGGTAGDGCTITDGACGACTGAAGGGGTA 1.000000 65 AGTTAIGDTGAATACDGTGATGCITTTTACCGCCGGTAGDGCCDCDGGCGTCCGGAGGGATA 1.000000 66 AGTTAIGDTGTGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 67 AGTTGIADTGAGTACDGTGGTGCICAATACAATCGGTGGIACCICIGGCGTCCGGGGGGATA 1.000000 68 AGTTGIADTGTGTATITTGGTGCITTTTACAATCGGTGCIACTITDGACGACTGAAGGGATA 1.000000 69 AGTTGIADCGTGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDCAAAATCAAAGGAATA 1.000000 70 AGTTGIADCGTGTATITTGGTGCITTTTACCGCCGGTGCIACCITDGACGACTGAAGGGATA 1.000000 71 AGTTGIADCGTGTATITTTGCCCITTTTACCGCCGGTAGDGATDCDGACGTCCGGAGGGATA 1.000000 72 AGTTGIADCGTGTACDGTGGTGCICAATACAATCGGTAGDGATDCDGACGTCCGGAGGGATA 1.000000 73 CAGCAIAITAAGTATIGCGGTCAITTTTACCGCCGGTAGDGCTITDGACGACCGAAGGAATA 1.000000 74 CAGCAIAITAAGTATITTGGTGCITTTTCCCATCGGTGCIACCICIGGCGTCCGGGGGGATA 1.000000 75 CAGCAIAITAAGTATITTTGTCCITTTTACCGCCGGTAGDGCCDCDGGCGTCCGAAGGGATA 1.000000 76 CAGCAIAITAAGTACDGTGATGCITTTTACAATTCACAGDGCTDCDGGCGTCCGGAAGGATA 1.000000 77 CAGCAIAITAAATACDGTGATGCITTTTACCGCCGGTGCIGCTITDCAAAATCAAAGGGATA 1.000000 78 CAGCAIAITGAGTATITTTGTCCITTTTACCACTCACGCIACTITDGACGACTGAAGGAATA 1.000000 79 CAGCAIAITGAATACDGTGATGCITTTTACAATTGACAGDGCTITDGACGACTGGAGGAATA 1.000000 80 CAGCAIAITGAATACDGTGATGCITTTTACAATTCATGGIACTITDGACGACTGAAGGGATA 1.000000 81 CAGCAIAITGAATACDGTGATGCITTTTACCGCCGGTGCIACTITDGACGACTGAAAAGGCT 1.000000 82 CAGCAIAITGAATACDGTGATGCITTTTACCGCCGGTGGIACTITDGACGACTGAAGGGATA 1.000000 83 CAGCAIAITGAATACDGTGATGCITTTTCAAATCGGTACDGCCITDGACGACTGAAGGGGTA 1.000000 84 CAGCAIAITGAATACDGTTGTCCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGGTA 1.000000 85 CAGCAIADTGTGTATITTGGTGCITTTTACAATCGGTAGDGCTDCDGGCGTCCGAAGGGATA 1.000000 86 CAGCAIGITGAGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 87 CAGCAIGITGAGTATITTGGTGCITTTTACAATTCACGCIACCITDGACGACTGAAGGGATA 1.000000 88 CAGCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDCAAAATCAAAGGAATA 1.000000 89 CAGCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 90 CAGCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGGTA 2.000000 91 CAGCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAAAGGCT 1.000000 92 CAGCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 2.000000 93 CAGCAIGITGAGTATITTGGTGCITTTTACCGCCGGTGGDGCTITDGACGACCGAAAAGGCT 1.000000 94 CAGCAIGITGAGTATITTTGTCCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 95 CAGCAIGITGAGTACDGTGGTGCICAATACAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 96 CAGCAIGITGAGTACDGTGGTGCICAATACCGCCGGTGCIACTITDCGAAACCAAAGGAATA 1.000000 97 CAGCAIGITGAGCCTIGCGGTCADTTTTACCGCCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 98 CAGCAIGITGAATACDGTGATGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGGTA 1.000000 99 CAGCAIGITGTGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 100 CAGCAIGITGTGTATITTGGTGCITTTTACCGCCGGTAGDGACITDCAAAATCAAAAAGGCT 1.000000 101 CAGCAIGICGTGTATITTGGTGCITTTTACAATCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 102 CAGCAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGATITDCAAAATCAAAAAGGCT 2.000000 103 CAGCAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGATITDGACGACTGAAAAGGCT 1.000000 104 CAGCAIGICGTGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGGTA 1.000000 105 CAGCAIGICGTGTATITTGGTGCITTTTACCGCCGGTGCIACCITDCAAAATCAAAGGAATA 1.000000 106 CAGCAIGICGTGTATITTTGTCCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 107 CAGCAIGICGTGTATITTTGTCCITTTTACAATCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 108 CAGCAIGICGTGTATITTTGTCCITTTTACAATTCACGGIGCTITDGACGACCGAAGGGATA 1.000000 109 CAGCAIGICGTGTATITTTGTCCITTTTACAATTCACGGIGCTITDGACGACCGAAGGAATA 1.000000 110 CAGCAIGICGTGTATITTTGTCCITTTTACCACCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 111 CAGCAIGICGTGTATITTTGTCCITTTTACCGCCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 112 CAGCAIGICGTGTATITTTGTCCITTTTACCGCCGGTAGDGATITDCGAAACCAAAGGAATA 1.000000 113 CAGCAIGICGTGTATITTTGTCCITTTTACCGCCGGTAGDGATITDGACGACTGAAGGAATA 1.000000 114 CAGCAIGICGTGTATITTTGTCCITTTTCAAATCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 115 CAGCAIGICGTGTATITTTGTCCICTTTACAATCGGTAGDGCTITDGACGACTGAAGGAATA 1.000000 116 CAGCAIGICGTGTATITTTGCCCITTTGACCGCCGGTAGDGATICIGGCGTCCGGGGGGATA 1.000000 117 CAGCAIGDTAAGTATITTTGTCCITTTTACCGCCGGTAGDGCCITDCAAAATCAAAGGAATA 1.000000 118 CAGCAIGDTATGTATDGTGGTGCICAATACAATTCACGCIACCITDGAAGACCAAAAAGGCT 1.000000 119 CAGCAIGDTGAGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 2.000000 120 CAGCAIGDTGAGTATITTGGTGCITTTGACAATCGGTAGDGCCITDGAAGACCAAAGGGGTA 1.000000 121 CAGCAIGDTGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 122 CAGCAIGDTGAGTACDGTGGTGCICAATACAACCGGTGCIACCICIGGCGTCCGGGGGAATA 1.000000 123 CAGCAIGDTGAGCCTIGCGGTCAITTTTACCGCCGGTAGDGCCICIGGCGTCCGGGGGAATA 1.000000 124 CAGCAIGDTGAGCCTIGCGGTCADTTTTACCGCCGGTAGIGCTICIGGCGTCCGGGGGGATA 1.000000 125 CAGCAIGDTGAGCCTIGCGGTCADTTTTACCGCCGGTAGDGATITDGACGACTGAAGGGATA 1.000000 126 CAGCAIGDTGAGCCTIGCGGTCADTTTTACCGCCGGTAGDGACDCDGGCGTCCGGAGGGATA 1.000000 127 CAGCAIGDTGAGCCTIGCGGTCADTTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 128 CAGCAIGDTGTGTATITTTGCCCITTTTACAATCGGTGCIACTITDGACGACTGAAGGGATA 1.000000 129 CAGCAIGDTGTGTACDGTGGTGCICAATACAATCGGTGCIACCICIGGCGTCCGGGGGGATA 2.000000 130 CAGCAIGDTGTGTACDGTGGTGCICAATACAATCGGTGCIACCICIGGCGTCCGGGGGAATA 1.000000 131 CAGCAIGDTGTGCCTDGTGATGCITTTTACAATCGGTAGDGCTITDGACGACCGAAAAGGCT 1.000000 132 CAGCAIGDTGTGCCTDGTGATGCITTTTCAAATTCACGGIACTITDGAAGACCAAAGGGACT 1.000000 133 CAGCAIGDTGTGCCTIGCGGTCADTTTTACCACCGGTGCIACTDCDGGCGTCCGAAGGGATA 1.000000 134 CAGCAIGDTGTATACDGTGATGCITTTTACAATTCACAGDGCTICIGGCGACTGAAGGGATA 1.000000 135 CAGCAIGDTGTATACDGTGATGCITTTTACCACCGGTGGDGCTITDGACGACTGAAGGGGTA 1.000000 136 CAGCAIGDTGTATACDGTGATGCITTTTACCACCGGTGGDGCTITDGACGACTGAAAAGGCT 1.000000 137 CAGCAIGDTGTACCTIGCGGTGCITTTTACCGCCGGTGCIGCTITDGACGACCGAAGAGGCT 1.000000 138 CAGCADGDTGAGTATDGTGATGCITTTTACCACCGGTGCIACTITDCAAAATCAAAGGAATA 1.000000 139 CAGCADGDTGAGTATITTTGTCCITTTTACAATCGGTGCIACTDCDGGCGTCCGGAGGGATA 1.000000 140 CAGCADGDTGAGTATITTTGTCCITTTTACCGCCGGTGGIACTITDGACGACTGAAGGGATA 1.000000 141 CAGCADGDTGTGTATDGTTGTCCITTTTACCACCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 142 CAGCADGDTGTGTATITTGGTGCITATTACAATTCACAGDGCTICIGGCGACTGAAGGGATA 1.000000 143 CAGCADGDTGTGTACDGTGGTGCICAATACAACCGGTGCIACCICIGGCGACTGAAGGGATA 1.000000 144 CAGCADGDTGTGCCTIGCGGTCADTTTTACCACCGGTGCIACTITDGACGACTGAAAGGGCT 1.000000 145 CAGCADGDCGTGTATITTTGTCCITTTTACCACTCACGCIACTITDGACGACTGAAGAGGCT 1.000000 146 CAGCGIADTAAGTATDGTTGTCCITTTTACCACCGGTGGDGCTITDGACGACTGAAGGGGTA 1.000000 147 CAGCGIADTAAGTATITTGGTGCITTTTACAACCGGTGCIACCICIGGCGTCCGGGGGAATA 1.000000 148 CAGCGIADTAAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 149 CAGCGIADTAAGTATITTTGTGCITTTTCAAATCGGTAGIACTITDGACGACTGAAGGGATA 2.000000 150 CAGCGIADTGAGTATITTGGTGCITTTTACCGCCGGTAGDGCTITDCAAAATCAAAGGAATA 1.000000 151 CAGCGIADTGTGTATDGTTGTCCITTTTACAATTCACAGDGCTDCDGGCGTCCGGAAGGATA 1.000000 152 CAGCGIADTGTGTATDGTTGTCCITTTTCAAATTCATGGIACTITDGACGACTGAAGGGATA 1.000000 153 CAGCGIADTGTATATITTTGTCCITTTGACAATCGGTGCIACCITDCAAAATCAAAGGAATA 1.000000 154 CAGCGIADTGTATACDGTGATGCITTTTACCACCGGTACDGCTITDGACGACTGAAGGGATA 1.000000 155 CAGCGIADTGTATACDGTGATGCITTTTACCACCGGTAGDGCTITDGACGACTGAAGGGATA 1.000000 156 CAGCGIADTGTATACDGTGATGCITTTTACCGCCGGTAGDGCCDCDGGCGTCCGGAGGGATA 2.000000 157 CAGCGIADCGTGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 158 CAGCGIADCGTGTATITTGGTGCITTTTACAATCGGTGCIACCITDGACGACTGAAGGGATA 1.000000 159 CAGCGIADCGTGTACDGTGGTGCICAATACCGCCGGTAGDGCTDCDGGCGTCCGGAGGGATA 1.000000 160 CAGCGIADCGTGTACDGTGGTGCICAATACCGCCGGTGCIACTITDCGAAACCAAAGGAATA 1.000000 161 CAGCGIADCGTATACDGTGATGCITTTTACCACCGATGCIACTDCDGGCGTCCGAAGGGATA 1.000000 162 CAGTAIGITGAATACDGTGATGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 163 CAGTAIGDTGAGCCTIGCGGTCADTTTTACCACCGGTAGDGCCICIGGCGTCCGGGAGGATA 1.000000 164 CAGTGIADTGTGTATITTGGTGCITTTTACAATCGGTGCIACTITDGACGACTGAAGGGATA 1.000000 165 CAGTGIADCGTGTATITTGGTGCITTTTACCGCCGGTAGDGATITDGACGACTGAAGGGATA 1.000000 166 CGGCAIGICGTGTATDGTGGTGCICAATACAATTCACGCIACCITDGAAGACCAAAAAGGCT 1.000000 167 CGTCAIGITGAGTATITTGGTGCITTTTACCGCCGGTAGDGCCITDGACGACTGAAGGGATA 1.000000 168 CGTTAIGICGTGTATITTGGTGCITTTGACAATCGGTAGDGATITDCAAAATCAAAGGAATA 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY P001: (99,147) P002: (45,64) P003: (49,132) P004: (77,84) P005: (116,1) P006: (3,141) P007: (55,88) P008: (70,35) P009: (42,105) P010: (18,51) P011: (155,166) P012: (42,90) P013: (27,44) P014: (96,122) P015: (15,72) P016: (10,124) P017: (138,120) P018: (118,148) P019: (7,39) P020: (33,62) P021: (82,135) P022: (14,25) P023: (65,71) P024: (5,149) P025: (31,73) P026: (28,123) P027: (74,167) P028: (8,106) P029: (134,137) P030: (98,109) P031: (21,67) P032: (131,136) P033: (4,90) P034: (23,36) P035: (54,95) P036: (13,128) P037: (63,117) P038: (78,151) P039: (26,68) P040: (52,91) P041: (76,156) P042: (145,101) P043: (56,86) P044: (48,162) P045: (46,115) P046: (112,168) P047: (121,130) P048: (103,158) P049: (125,127) P050: (153,154) P051: (2,17) P052: (9,100) P053: (52,60) P054: (129,159) P055: (22,89) P056: (79,140) P057: (87,161) P058: (41,164) P059: (16,139) P060: (69,110) P061: (38,108) P062: (58,94) P063: (50,156) P064: (142,143) P065: (81,83) P066: (32,66) P067: (13,114) P068: (24,165) P069: (20,59) P070: (6,19) P071: (57,107) P072: (113,126) P073: (47,111) P074: (37,119) P075: (12,61) P076: (129,160) P077: (11,92) P078: (150,102) P079: (30,93) P080: (80,85) P081: (55,102) P082: (97,104) P083: (40,119) P084: (43,92) P085: (53,157) P086: (53,152) P087: (146,149) P088: (75,163) P089: (133,144) P090: (29,34) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 P001 C A G C (A) I (G) (I) [T] (G) (T) G T A T I T T G G T G C I T T T G A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A C A G C (G) I (A) (D) [T] (A) (A) G T A T I T T G G T G C I T T T T A C A A C C G G T G C I A C C I C I G G C G T C C G G G G G [A] A T A 0 P002 A [G] T [T] A I G I T G A G T A T [I] [T] T G G T G C I C A A T A C C G C C G G T G [C] I A C T I T D C G A A A C C A A A G G A A T A A G T [T] A I G D T G A G T A C [D] [G] T T G T C C I T T T T C A [A] [A] [T] [C] [G] [G] [T] A G D G C [T] I T D G A C G A C T G A A G G G G T A 0 P003 (A) (G) (T) [T] A I G I C G T G T A T D G T T G C C C I T T T T A C A A T T C A C A G D G C [T] I C I G G C G T C C G G G G G G A T A (C) (A) (G) C A I G D T G T G C C T D G T G A T G C I T T T T C A A A T T C A C G G I [A] C T I T D G A A G A C C A A A G G G A C T 0 P004 C A G C A I A I T A A A T A C D G T (G) (A) T (G) C I T T T T A C C G C C G G T G C I G C T I T D C A A A A T C A A A G G G (A) T A C A G C A I A I T G A A T A C D G T (T) (G) T (C) C I T T T T A C C G C C G G T A G D G C T I T D G A C G A C T G A A G G G (G) T A 0 P005 (C) [A] (G) [C] A I G I (C) G (T) G T A T I T T (T) G (C) [C] C I T T T G A C C G C C G G T A G D G A T I C I G G C G T C C G G G G G G A T A (A) [A] (T) [C] A I G I (T) G (A) G T A T I T T (G) G (T) [G] C I T T T G A C C G C C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P006 (A) [A] (T) [C] A (I) G (I) T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G A T I T D G A C G A C T G A A G G G A T A (C) [A] (G) C A (D) G (D) T G [T] G T A T D G T T G T C C I T T T T A C C A C C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P007 (A) [G] (T) (T) A I G I (C) G (T) G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C (C) I T D (G) A (C) (G) A (C) (T) (G) A A G G (G) A T A (C) [A] (G) (C) A I G I (T) G (A) G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C (T) I T D (C) A (A) (A) A (T) (C) (A) A A G G (A) A T A 0 P008 A [G] T [T] G I A D C G T G T A T I T T G G T G C I T T T T A C C G C C G G T G C I A C C I T D G A C G A C T G A A G G G A T A A [G] T [C] G I A D C G T G T A T I T T G G T G C I C A A T A C C G C C G G T G C I A C C I T D G A C G A C T G A A G G G A T A 0 P009 A G T T A I G I (T) G (A) G T A T I T T G G T G C I T T T T A C C G C C G G T (A) (G) (D) (G) C (T) I T D G A C G A C C G A A G G [A] A T A C A G C A I G I (C) G (T) G T A T I T T G G T G C I T T T T A C C G C C G G T (G) (C) (I) (A) C (C) I T D C A A A A T C A A A G G [A] A T A 0 P010 A (A) T [C] (G) I (A) (D) [T] G T G T A T (D) (G) T (T) G T (C) C I T T T T A C C G C C G G T A G D G [C] (C) I T D G A C G A C T G A A (G) (G) G (A) (T) (A) A (G) T [T] (A) I (G) (I) [C] G T G T A T (I) (T) T (G) G T (G) C I T T T G A C A A T C G G T A G D G A (T) I T D C A A A A T C A A A (A) (A) G (G) (C) (T) 0 P011 C (A) G C (G) I (A) [D] (T) G T A T A C D G T G A T G C I T T T T A C C A C C G G T A G D G C T I T D G A C G A C T G A A G G G A T A C (G) G C (A) I (G) [I] (C) G T G T A T D G T G G T G C I C A A T A C A A T T C A C G C I A C C I T D G A A G A C C A A A A A G G C T 0 P012 A G T T A I G I T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G [C] T I T D G A C G A C (C) G A A G G (A) (A) T A C A G C A I G I T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G [C] T I T D G A C G A C (T) G A A G G (G) (G) T A 0 P013 A (A) T C G I A D [C] G T G T A T I T T G G T G C I [C] A A T A C [C] [G] C C G G T A G D G C (T) I T D G A C G A C (C) G A A (A) G G A (C) (T) A (G) T [T] A I G I [T] G [A] G T A T I T T G G T G C I T T T T A C [C] [G] C C G G T A G D G C (C) I T D G A C G A C (T) G A A (G) G G A (T) (A) 0 P014 C A G C A I G (I) T G A G T A C D G T G G T G C I C A A T A C C G C C G G T G [C] I A C T I T D C G A A A C C A A A G G A A T A C A G C A I G (D) T G A G T A C D G T G G T G C I C A A T A C A A C C G G T G C I A C C I C I G G C G T C C G G G G G A A T A 0 P015 A A T (C) (A) I (G) D C G T G T A T I T T G G T G C I T T T T C A C G C T C A C A G D G C T I T D G A C G A C T G A A G G G A T A A [G] T (T) (G) I (A) D C G T G T A C D G T G G T G C I C A A T A C A A T C G G T A G D G A T D [C] D G A C G T C C G G A G G G A T A 0 P016 (A) [A] (T) [C] A I G D T G [A] G T A T I T T G G T G C I T T T T A C A A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A (C) A (G) C A I G D T G A G C C T I G C G G T C A D T T T T A C C G C C G G T A G I G C [T] I C I G G C G T C C G G G G G G A T A 0 P017 C A G C A (D) G D T G A G T A [T] (D) (G) T G (A) T G C I T T T (T) A C [C] A (C) C G G T (G) (C) (I) (A) C (T) I T D (C) A A (A) A (T) C A A A G G (A) (A) T A C A G C A (I) G D T G A G T A T (I) (T) T G (G) T G C I T T T (G) A C A A (T) C G G T (A) (G) (D) (G) C (C) I T D (G) A A (G) A (C) C A A A G G (G) (G) T A 0 P018 C A G C (A) I (G) D T A (T) G T A [T] D G T G G T G C I C A A T A C A A T T C A C G C I A C C I T D G A A G A C C A A A A A G G C T C A G C (G) I (A) D T A (A) G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C T I T D G A C G A C T G A A G G G A T A 0 P019 A (A) T (C) A I G I [C] G T G C C T I T T G G T G C I T T T T A C C G C C G G T A G D G A T I T D G A C G A C T G A A G G G A T A A (G) T (T) A I G I T A A G T A T I G C G G T C A D T T T T A C A A T C G G T G G I A C C I C I G G C G T C C G G G G G G A T A 0 P020 A G T (C) A I G D T G A G T A C D G T G G T G C I C A A T A C C G C C G G T (G) G (I) (A) (C) (C) (I) C [I] G G C G T C C G G (G) G G G A T A A G T (T) A I G D T G A G T A T I T T T G C C C I T T T T A C C G C C G G T (A) G (D) (G) (A) (T) (D) C [D] G G C G T C C G G (A) G G G A T A 0 P021 C A G C A I (A) [I] T G (A) A T A C D G T G A T G C I T T T T A C C G C C G G T G G I A C T I T D G A C G A C T G A A G G G A T A C A G C A I (G) [D] T G (T) A T A C D G T G A T G C I T T T T A C C A C C G G T G G D G C T I T D G A C G A C T G A A G G G G T A 0 P022 A A T C A I G D C G T G T A T I T T G G T G C I T T T T A C C G C C G G T G C I A C C I T D G A C G A C T G A A G G G A T A A A T C G I A D C G T G T A T I T T G G T G C I C T A T A C C G C C G G T A G D G C C D C D G G C G T C C G G A G G G A T A 0 P023 A G T T A I G D T G A A T A C D G T G A T G C I T T T T A C C G C C G G T A G D G C C D C D G G C G T C C G G A G G G A T A A G T T G I A D C G T G T A T I T T T G C C C I T T T T A C C G C C G G T A G D G A T D [C] D G A C G T C C G G A G G G A T A 0 P024 (A) A (T) C A I G I [C] G T G T A T I T T G G T G C I T T T T A C A A T C G G T A G D G A C D C D G G C G T C C G G A G G G A T A (C) A (G) C G I A D [T] A A G T A T I T T T G T G C I T T T T C A A A T C G G T A G I A C T I T D G A C G A C T G A A G G G A T A 0 P025 (A) (G) (T) C A I G I T G [A] G C C T I T T T G T C A D T T T T A C C G C C G G T A G D G C C D C D G G C G T C C G A A G G G A T A (C) (A) (G) C A I A I T A A G T A T I G C G G T C A I T T T T A C C G C C G G T A G D G C T I T D G A C G A C C G A A G G A A T A 0 P026 (A) A (T) C (G) I (A) D (C) G (T) G T A T I (T) (T) (T) G (C) C (C) I T T T T A C (A) (A) (T) C G G T (G) (C) (I) (A) C (T) I (T) (D) G (A) C G (A) C (T) G (A) (A) G G (G) A T A (C) A (G) C (A) I (G) D (T) G (A) G C C T I (G) (C) (G) G (T) C (A) I T T T T A C (C) (G) (C) C G G T (A) (G) (D) (G) C (C) I (C) (I) G (G) C G (T) C (C) G (G) (G) G G (A) A T A 0 P027 C (A) (G) C A I A I T A A G T A T I T T G G T G C I T T T T (C) C C A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A C (G) (T) C A I G I T G A G T A T I T T G G T G C I T T T T (A) C C G C C G G T A G D G C C I T D G A C G A C T G A A G G G A T A 0 P028 (A) A (T) C A I G (D) (T) G (A) G T A T (D) (G) T (G) G T (G) C I (C) T T T A C C A T C G G T G C I A C C I T D C A A A A T C A A A G G A A T A (C) A (G) C A I G (I) (C) G (T) G T A T (I) (T) T (T) G T (C) C I (T) T T G A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P029 C A G C A I G D T G [T] A T A C D G T G A T G C I T T T T A C A A T T C A C A G D G C T [I] C [I] G G C G A C T G A A G G G A T A C A G C A I G D T G [T] A C C T I G C G G T G C I T T T T A C C G C C G G T G C I G C T I T D G A C G A C C G A A G A G G C T 0 P030 C A G C A I G I (T) G [A] (A) T A [C] (D) (G) T (G) (A) T (G) C I T T T T A C C G C C G G T A G D G C C I T D G A C G A C (T) G A A G G (G) (G) T A C A G C A I G I (C) G [T] (G) T A [T] (I) (T) T (T) (G) T (C) C I T T T T A C A A T T C A C G G I G C T I T D G A C G A C (C) G A A G G (A) (A) T A 0 P031 A (A) T (C) G I A D T G (T) G T A (T) (I) (T) T G G T G C I (T) T (T) T A C (C) (G) (C) C G G T A G D G C C I (T) (D) G (A) C G (A) C (T) G (A) (A) G G G A T A A (G) T (T) G I A D T G (A) G T A (C) (D) (G) T G G T G C I (C) [A] (A) T A C (A) (A) (T) C G G T G G I A C C I (C) (I) G (G) C G (T) C (C) G (G) (G) G G G A T A 0 P032 C A G C A I G D T G T (G) (C) (C) (T) D G T G A T G C I T T T T A C (A) A (T) C G G T (A) G D G C T I T D G A C G A C (C) G A A A A G G C T C A G C A I G D T G T (A) (T) (A) (C) D G T G A T G C I T T T T A C (C) A (C) C G G T (G) G D G C T I T D G A C G A C (T) G A A A A G G C T 0 P033 (A) A (T) C A I G I T G A G T A T I T T (T) G T (C) C I T T T T A C C G C C G G T A G D G [C] (C) I T D G A C G A C T G A A G G G (A) T A (C) A (G) C A I G I T G A G T A T I T T (G) G T (G) C I T T T T A C C G C C G G T A G D G [C] (T) I T D G A C G A C T G A A G G G (G) T A 0 P034 A A T C G I A D [T] G [T] G T A T I T T T G T C C I T T T T A C C G C C G G T A G I A C C I T D G A C G A C T G A A G G G A T A A G T T A I A I T A A G T A T I T T T G T C C I T T T T A C C G C C G G T A G I A C C I T D G A C G A C T G A A G G G A T A 0 P035 (A) (G) (T) (T) A I G I (C) G (T) G T A (T) (I) (T) T G G T G C I (T) (T) (T) T A C (C) (G) (C) C G G T A G D G C C I T D (C) A (A) (A) A (T) (C) (A) A A G G (A) A T A (C) (A) (G) (C) A I G I (T) G (A) G T A (C) (D) (G) T G G T G C I (C) (A) (A) T A C (A) (A) (T) C G G T A G D G C C I T D (G) A (C) (G) A (C) (T) (G) A A G G (G) A T A 0 P036 (A) A (T) C A I G D T G T G T A T I T T T G (T) C C I T T T T A C A A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A (C) A (G) C A I G D T G T G T A T I T T T G (C) C C I T T T T A C A A T C G G T G C I A C T I T D G A C G A C T G A A G G G A T A 0 P037 (A) (G) (T) (T) A I G D T (G) A G T A (C) (D) (G) T (G) G T (G) C I (C) (A) (A) T A C (A) (A) (T) C G G T A G D G C C I T D [G] A (C) (G) A C [T] [G] A A G G (G) A T A (C) (A) (G) (C) A I G D T (A) [A] G T A (T) (I) (T) T (T) G T (C) C I (T) (T) (T) T A C (C) (G) (C) C G G T A G D G C C I T D C A (A) (A) A [T] C A A A G G (A) A T A 0 P038 C A G C (A) I A (I) T G [A] G T A T I T T T G T C C I T T T T A C C A C T C A C G C I A C T I T D G A C G A C T G A A G G A A T A C A G C (G) I A (D) T G [T] G T A T D G T T G T C C I T T T T A C A A T T C A C A G D G C T D C D G G C G T C C G G A A G G A T A 0 P039 A (A) T (C) G I A D (C) G T G T A T I T T G G T G C I (C) (A) (A) T A C (C) (G) (C) C G G T (A) (G) (D) (G) C T I T D (C) A (A) (A) A (T) (C) (A) A A G G (A) A T A A (G) T (T) G I A D (T) G T G T A T I T T G G T G C I (T) (T) (T) T A C (A) (A) (T) C G G T (G) (C) (I) (A) C T I T D (G) A (C) (G) A (C) (T) (G) A A G G (G) A T A 0 P040 [A] (G) (T) (T) A I G I (C) G [T] G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C T I T D G A C G A C T G A A (G) (G) G (A) T A [C] (A) (G) (C) A I G I (T) G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C T I T D G A C G A C T G A A (A) (A) G (G) [C] [T] 0 P041 C A G C A I A I T A [A] G T A C D G T G [A] T G C I T T T T A C A A T T C A C A G D G C T D C D G G C G T C C G G A A G G A T A C A G C G I A D [T] G T A T A C D G T G A T G C I T T T T A C C G C C G G T A G D G [C] [C] D C D G G C G T C C G [G] A G G G A T A 0 P042 C A G C A (D) G (D) C G T G T A T I T T (T) G T (C) C I T T T T A C C A C T C A C G C I A C T I T D G A C G A C T G A A G A G G C T C A G C A (I) G (I) C G T G T A T I T T (G) G T (G) C I T T T T A C A A T C G G T A G D G [C] T I T D G A C G A C T G A A G G G A T A 0 P043 A G T T A I G I [C] G (T) G T A T I T T (T) G (C) (C) C I T T T G A C A A T C G G T A G D G C C I T D G A C G A C C G A A G G G G T A C A G C A I G I [T] G (A) G T A T I T T (G) G (T) (G) C I T T T G A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P044 (A) (G) (T) T A I G I T G A (G) T A C (I) (T) T G (G) T G C I T T T T A C C G C C G G T A G D G C C I T D G A C G A C T G A A (A) (A) G (G) (C) (T) (C) (A) (G) T A I G I T G A (A) T A C (D) (G) T G (A) T G C I T T T T A C C G C C G G T A G D G C C I T D G A C G A C T G A A (G) (G) G (A) (T) (A) 0 P045 (A) (G) (T) (T) A I G I (T) G [A] G T A C D G T G G T G C I C A A T A C A A T C G G T (G) G (I) (A) C (C) I T D G A C G A C T G A A G G A A T A (C) (A) (G) (C) A I G I (C) G [T] G T A T I T T T G T C C I C T T T A C A A T C G G T (A) G (D) (G) C (T) I T D G A C G A C T G A A G G A A T A 0 P046 C (A) (G) (C) A I G I C G T G T A T I T T (T) G T (C) C I T T T T A C C G C C G G T A G D G A T I T D C (G) A A A (C) C A A A G G A A T A C (G) (T) (T) A I G I C G T G T A T I T T (G) G T (G) C I T T T G A C A A T C G G T A G D G A T I T D C (A) A A A (T) C A A A G G A A T A 0 P047 C A G C A I G D T G (A) G T A (T) (I) (T) T G G T G C I T (T) (T) T A C [C] (G) (C) C G G T (A) (G) (D) (G) C (T) I (T) (D) G (A) C G (A) C (T) G (A) (A) G G (G) A T A C A G C A I G D T G (T) G T A (C) (D) (G) T G G T G C I [C] (A) (A) T A C A (A) (T) C G G T (G) (C) (I) (A) C (C) I (C) (I) G (G) C G (T) C (C) G (G) (G) G G (A) A T A 0 P048 C A G C (A) I (G) (I) C G T G T A T I T T G G T G C I T T T T A C C G C C G G T A G (D) (G) (A) (T) I T D G A C G A C T G A A A A G G C T C A G C (G) I (A) (D) C G T G T A T I T T G G T G C I T T T T A C A A T C G G T [G] [C] (I) (A) (C) (C) I T D G A C G A C T G A A G G G A T A 0 P049 [C] A G C A I G D T G A G C C T I G C G G T C A D T T T T A C C G C C G G T A G D G [A] T I T D G A C G A C T G A A G G G A T A [C] A G C A I G D T G A G C C T I G C G G T C A D T T T T A C C G C C G G T A G [D] G [C] C I T D G A C G A C T G A A G G G A T A 0 P050 C A G C G I A D T G T A T A (T) (I) (T) T (T) (G) T (C) C I T T T (G) A C (A) A (T) C G G T (G) C (I) (A) C (C) I T D C A A A A T C A A A G G A A T A C A G C G I A D T G T A T A (C) (D) (G) T (G) (A) T (G) C I T T T (T) A C (C) A (C) C G G T (A) C (D) (G) C (T) I T D G A C G A C T G A A G G G A T A 0 P051 A A T C (A) I (G) (I) T G [A] G T A T I T T (G) G T (G) C I T T T T A C C G C C G G T A G D G (A) (T) I T D C A A A A T C A A A G G A A T A A A T C (G) I (A) (D) T G [A] G T A T I T T (T) G T (C) C I T T T T A C C G C C G G T A G D G (C) (C) D C D G G C G T C C G A A G G A A T A 0 P052 [A] A (T) C A I G (D) [T] G (A) G T A T I T T G G T G C I T T T T A C (A) (A) (T) C G G T A G D G (C) C I T D G A C G A C T G A A G G G A T A [C] A (G) C A I G (I) [T] G (T) G T A T I T T G G T G C I T T T T A C (C) (G) (C) C G G T A G D G (A) C I T D C A A A A T C A A A A A G G C T 0 P053 A G T T A I G (I) [C] G T G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G [C] T I T D G A C G A C T G A A G G G (A) T A A G T T A I G (D) T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G [C] T I T D G A C G A C T G A A G G G (G) T A 0 P054 C A G C (A) I (G) D (T) G [T] G T A C D G T G G T G C I C A A T A C (A) (A) (T) C G G T (G) (C) (I) (A) C (C) I C I G G C G T C C G G G G G G A T A C A G C (G) I (A) D (C) G [T] G T A C D G T G G T G C I C A A T A C (C) (G) (C) C G G T (A) (G) (D) (G) C (T) D C D G G C G T C C G G A G G G A T A 0 P055 A A T C G I A D [T] G T G T A T I T T G G T G C I T (A) (A) T A C (A) (A) (T) C G G T A G D G C (C) I T D G A C G A C T G A A G G G A T A C A G C A I G I T G A G T A T I T T G G T G C I T (T) (T) T A C (C) (G) (C) C G G T A G D G C (T) I T D G A C G A C T G A A G G G A T A 0 P056 C A G C A (I) (A) (I) T G [A] A T A C D G T G A T G C I T T T T A C A A T T G A C A G D G C T I T D G A C G A C T G G A G G A A T A C A G C A (D) (G) (D) T G [A] G T A T I T T T G T C C I T T T T A C C G C C G G T G G I A C T I T D G A C G A C T G A A G G G A T A 0 P057 C A G C A I G I T G A G T A T I T T G G T G C I T T T T A C A A [T] T C A C G C I A C C I T D G A C G A C T G A A G G G A T A C A G C G I A D C G T A T A C D G T G A T G C I T T T T A C [C] A C C G A T G C I A C T D C D G G C G T C C G A A G G G A T A 0 P058 A (G) (T) T (A) I (G) (I) T G (A) G T A T I T T G G T G C I T T T T A C A A T C G G T (A) (G) (D) (G) C (C) I T D G A C G A C T G A A G G G A T A [C] (A) (G) T (G) I (A) (D) [T] G (T) G T A T I T T G G T G C I T T T T A C A A T C G G T (G) (C) (I) (A) C (T) I T D G A C G A C T G A A G G G A T A 0 P059 [A] A (T) C A D G D T G (T) G (C) (C) T I (G) (C) (G) G T C (A) (D) T T T T (C) (A) A A T (T) (C) (A) (C) G C I A C T I T D G A A G A C C A A A G G G A C T [C] A (G) C A D G D T G (A) G (T) (A) T I (T) (T) (T) G T C (C) (I) T T T T (A) (C) A A T (C) (G) (G) (T) G C I A C T D C D G G C G T C C G G A G G G A T A 0 P060 (A) (G) (T) (T) (G) I (A) (D) [C] G T G T A T I T T (G) G T (G) C I T T T T A C C (G) C C G G T A G D G C (C) I T D C A A A A T C A A A G G A A T A (C) (A) (G) (C) (A) I (G) (I) [C] G T G T A T I T T (T) G T (C) C I T T T T A C C (A) C C G G T A G D G C (T) I T D G A C G A C T G A A G G G A T A 0 P061 (A) (G) (T) (T) A I (A) I [T] (A) T [G] T A (C) (D) (G) T (G) (A) T (G) C I T T T T A C A A C C G G T G C D G A T I T D C A A A A T C A A A (A) (A) G (G) (C) (T) (C) (A) (G) (C) A I (G) I [C] (G) T G T A (T) (I) (T) T (T) (G) T (C) C I T T T T A C A A T T C A C G G I G C T I T D G A C G A C C G A A (G) (G) G (A) (T) (A) 0 P062 A G T T A I G D T G A G T A T I T T G G T G C I T T T G A C A A T C G G T A G D G A T D C D G G C G T C C G G A G G G A T A C A G C A I G I T G A G T A T I T T T G T C C I T T T G A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P063 (A) (G) (T) (T) (A) I (G) (I) (C) G T (G) T A (T) (I) (T) T G (G) T G C I T T T G A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A (C) (A) (G) (C) (G) I (A) (D) (T) G T (A) T A (C) (D) (G) T G (A) T G C I T T T T A C C G C C G G T A G D G C C D C D G G C G T C C G G A G G G A T A 0 P064 C A G C A D G D T G T G T A T I T T G G T G C I T A T T A C A A T T C A C A G D G C T [I] C [I] G G C G A C T G A A G G G A T A C A G C A D G D T G T G T A C D G T G G T G C I C A A T A C A A C C G G T G C I A C C I C I G G C G A C T G A A G G G A T A 0 P065 C A G C A I A I T [G] A A T A C D G T G A T G C I T T T T (A) (C) (C) (G) (C) C G G T (G) C I [A] C [T] I T D G A C G A C T G A A (A) (A) G G (C) (T) C A G C A I A I T [G] A A T A C D G T G A T G C I T T T T (C) (A) (A) (A) (T) C G G T (A) C [D] [G] C [C] I T D G A C G A C T G A A (G) (G) G G (T) (A) 0 P066 A G T (C) A I G D T G (A) G T A (C) (D) (G) T G G T G C I (C) (A) (A) T A C (A) (A) (T) C G G T A G D G C (C) I (C) (I) G (G) C G (T) C (C) G (G) (G) G G G A T A A G T (T) A I G D T G (T) G T A (T) (I) (T) T G G T G C I (T) (T) (T) T A C (C) (G) (C) C G G T A G D G C (T) I (T) (D) G (A) C G (A) C (T) G (A) (A) G G G A T A 0 P067 [A] A (T) C A I G (D) (T) G [T] G T A T I T T T G T C C I T T T T (A) (C) A A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A [C] A (G) C A I G (I) (C) G [T] G T A T I T T T G T C C I T T T T (C) (A) A A T C G G T A G [D] [G] C C I T D G A C G A C T G A A G G G A T A 0 P068 (A) A (T) (C) G I A D (T) G T G T A T I T T (T) G T G C I T T T T A C C G C C G G T A G (I) (A) (C) (C) I T D G A C G A C T G A A G G G A T A (C) A (G) (T) G I A D (C) G T G T A T I T T (G) G T G C I T T T T A C C G C C G G T A G (D) (G) (A) (T) I T D G A C G A C T G A A G G G A T A 0 P069 A (A) T C [G] I A D T G (T) G T A T I T T G G T G C I T T T T A C A A T C G G T (G) [G] D G (A) (T) I T D G A C G A C T G A A G G G A T A A (G) T [T] A I G D T G (A) G T A T I T T G G T G C I T T T T A C A A T C G G T (A) [G] D G (C) (C) I T D G A C G A C T G A A G G G A T A 0 P070 A A T C (A) I (G) (I) [C] G T G T A T I T T (T) G T (C) C I T T T T A C A A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A A A T C (G) I (A) (D) [T] G T G T A T I T T (G) G T (G) C I T T T T A C A A T C G G T G C I A C T I T D G A C G A C T G A A G G G A T A 0 P071 (A) (G) (T) (T) A I G I C G T G T A T I T T T G (C) C C I T T T T A C A A T C G G T A G D G C (C) I C I G G C G T C C G G G G G G A T A (C) (A) (G) (C) A I G I C G T G T A T I T T T G (T) C C I T T T T A C A A T C G G T A G D G C (T) I T D G A C G A C T G A A G G G A T A 0 P072 C A G C A I G I C G T G T A T I T T T G T C C I T T T T A C C G C C G G T A G D G A (T) (I) [T] D G (A) C G (A) C (T) G (A) A G G (A) A T A C A G C A I G D T G A G C C T I G C G G T C A D T T T T A C C G C C G G T A G D G A (C) (D) [C] D G (G) C G (T) C (C) G (G) A G G (G) A T A 0 P073 (A) [G] (T) (T) A I G I (T) G [A] G T A (C) (D) (G) T (G) G T (G) C I (C) (A) (A) T C A A A T C G G T A G I A C T I T D G A C G A C T G A A G G G A T A (C) [A] (G) (C) A I G I (C) G [T] G T A (T) (I) (T) T (T) G T (C) C I (T) (T) (T) T A C C G C C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P074 A G T T A I A I T A A G T A T I T T T G T C C I T T T T A C C G C C G G T A G D G C T I C I G G C G T C C G G G G G G A T A C A G C A I G D T G A G T A T I T T G G T G C I T T T G A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P075 A (A) T (C) A I G D T G A G (C) (C) T I (G) (C) G G T (C) (A) (D) T T T T (A) (C) C G C C G G T A G D G A C I C I G G C G T C C G G G G G G A T A A (G) T (T) A I G D T G A G (T) (A) T I (T) (T) G G T (G) (C) (I) T T T T (C) (A) A A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A 0 P076 C A G C (A) I (G) D (T) G T G T A C D G T G G T G C I C A A T A C A A T C G G T G C I A C C I C I G G C G T C C G G G G G G A T A C A G C (G) I (A) D (C) G T G T A C D G T G G T G C I C A A T A C C G C C G G T G [C] I A C T I T D C G A A A C C A A A G G A A T A 0 P077 (A) A (T) C A I G (D) T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C (T) I T D G A C G A C (C) G A A A A G G C T (C) A (G) C A I G (I) T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C (C) I T D G A C G A C (T) G A A G G G A T A 0 P078 C A G C (G) I (A) (D) (T) G (A) G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G (C) T I T D C A A A A T C A A A G G A A T A C A G C (A) I (G) (I) (C) G (T) G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G (A) T I T D C A A A A T C A A A A A G G C T 0 P079 (A) (G) (T) C A I G I T G A G (C) (C) T I (G) (C) G G T (C) (A) (D) T T T T A C C G C C G G T A G D G (A) T I T D G A C G A C (T) G A A (G) (G) G (A) T A (C) (A) (G) C A I G I T G A G (T) (A) T I (T) (T) G G T (G) (C) (I) T T T T A C C G C C G G T G G D G (C) T I T D G A C G A C (C) G A A (A) (A) G (G) [C] [T] 0 P080 C A G C A I A (I) T G (A) (A) T A (C) (D) (G) T G (A) T G C I T T T T A C A A T (T) (C) (A) T (G) G (I) (A) C T [I] [T] D G (A) C G (A) C (T) G A A G G G A T A C A G C A I A (D) T G (T) (G) T A (T) (I) (T) T G (G) T G C I T T T T A C A A T (C) (G) (G) T (A) G (D) (G) C T [D] [C] D G (G) C G (T) C (C) G A A G G G A T A 0 P081 [A] [G] (T) (T) A I G I C G T G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G (C) (C) I T D G A C G A C T G A A G G G A T A [C] [A] (G) (C) A I G I C G T G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G (A) (T) I T D C A A A A T C A A A A A G G C T 0 P082 C A G C A I G I (T) G (A) G (C) (C) T I (G) (C) G G T (C) (A) (D) T T T T A C C G C C G G T A G D G (A) (T) I T D (C) A (A) (A) A (T) (C) (A) A A G G (A) (A) T A C A G C A I G I (C) G (T) G (T) (A) T I (T) (T) G G T (G) (C) (I) T T T T A C C G C C G G T A G D G (C) (C) I T D (G) A (C) (G) A (C) (T) (G) A A G G (G) (G) T A 0 P083 (A) [G] (T) (T) A I G (I) T G A G T A T I T T G G T G C I T T T (T) A C A A T C G G T A G D G C C I T D G A C G A C C G A A G G G G T A (C) [A] (G) (C) A I G (D) T G A G T A T I T T G G T G C I T T T (G) A C A A T C G G T A G D G A T I T D C A A A A T C A A A G G A A T A 0 P084 (A) (G) (T) (T) A I G I T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C (T) I T D G A C G A C T G A A A A G G C T (C) (A) (G) (C) A I G I T G A G T A T I T T G G T G C I T T T T A C C G C C G G T A G D G C (C) I T D G A C G A C T G A A G G G A T A 0 P085 [A] (G) (T) (T) (A) I (G) (I) C G T G T A T I T T G G T G C I T T T (T) A C [C] (G) (C) C G G T A G D G (C) (C) I C I G G C G T C C G G G G G A A T A [C] (A) (G) (C) (G) I (A) (D) C G T G T A T I T T G G T G C I T T T (G) A C A (A) (T) C G G T A G D G (A) (T) I T D C A A A A T C A A A G G A A T A 0 P086 (A) (G) (T) (T) (A) I (G) (I) (C) G T G T A T (I) (T) T (G) G T (G) C I T T T T (A) (C) C G C C G G T A G D G C C I (C) (I) G (G) C G (T) C (C) G (G) (G) G G (A) A T A (C) (A) (G) (C) (G) I (A) (D) (T) G T G T A T (D) (G) T (T) G T (C) C I T T T T (C) (A) A A T T C A T G G I A C T I (T) (D) G (A) C G (A) C (T) G (A) (A) G G (G) A T A 0 P087 C A G C G I A D [T] A [A] G T A T D G T T G T C C I T T T T A C C A C C G G T G G D G C T I T D G A C G A C T G A A G G G [G] T A C A G C G I A D [T] A A G T A T I T T T G T G C I T T T T C A A A T C G G T A G I A C T I T D G A C G A C T G A A G G G A T A 0 P088 C A G C A I A I T A A G T A T I T T T G T C C I T T T T A C C G C C G G T A G D G C C (D) C [D] G G C G T C C G (A) (A) G G G A T A C A G T A I G D T G [A] G C C T I G C G G T C A D T T T T A C C A C C G G T A G D G C C (I) C [I] G G C G T C C G (G) (G) A G G A T A 0 P089 C A G C A (I) G D T G T G C C T I G C G G T C A D T T T T A C C A C C G G T G C I A C T D C D G G C G T C C G A A (G) G G (A) (T) (A) C A G C A (D) G D T G T G C C T I G C G G T C A D T T T T A C C A C C G G T G C I A C T I T D G A C G A C T G A A (A) G G (G) (C) (T) 0 P090 A [A] T (T) G I A D (C) G T G T A T I T T T G C C C I T T T T A C C G C C G G T A G D G (C) (C) I T D G A C G A C T G A A G G G A T A A [G] T (C) G I A D (T) G T G T A T I T T T G C C C I T T T [T] A C C G C C G G T A G D G (A) (T) I C I G G C G T C C G G G G G G A T A END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 P001 ? ? = ? (A) = (G) (I) ? (G) (T) = = = = ? ? = = = = ? = ? = = = G ? ? = = T = = = = A G D G A ? = T D C A A A A T = A A A = ? ? = = = ? ? = ? (G) = (A) (D) ? (A) (A) = = = = ? ? = = = = ? = ? = = = T ? ? = = C = = = = G C I A C ? = C I G G C G T C = G G G = ? ? = = = 0 P002 = ? = ? = = = I = = = = = = T ? ? = G = ? ? ? ? C ? ? ? A C ? ? ? ? ? ? ? ? ? I A = ? ? = = C G A A ? = C A = = = = ? A = = = ? = ? = = = D = = = = = = C ? ? = T = ? ? ? ? T ? ? ? C A ? ? ? ? ? ? ? ? ? D G = ? ? = = G A C G ? = T G = = = = ? G = = 0 P003 (A) (G) (T) ? = ? = I C = ? ? T A = = = = ? ? C ? = ? ? ? = = A C ? = = = = = = A = D ? ? ? = C I = G C = T = = G G G = = ? = T A (C) (A) (G) ? = ? = D T = ? ? C C = = = = ? ? T ? = ? ? ? = = C A ? = = = = = = G = I ? ? ? = T D = A A = A = = A A A = = ? = C T 0 P004 = = = ? = = = = ? A = = = = = = = ? (G) (A) = (G) = = ? = = = = = = = = = = = = G C I = = = = = = C = A A = T C A = = = = = (A) = = = = = ? = = = = ? G = = = = = = = ? (T) (G) = (C) = = ? = = = = = = = = = = = = A G D = = = = = = G = C G = C T G = = = = = (G) = = 0 P005 (C) ? (G) ? = = = = (C) = (T) = = = = = = = (T) = (C) ? ? ? = = = = = = = = = = = = = = = = = = = = C I G G C G T C = G G ? = = ? = = = (A) ? (T) ? = = = = (T) = (A) = = = = = = = (G) = (T) ? ? ? = = = = = = = = = = = = = = = = = = = = T D C A A A A T = A A ? = = ? = = = 0 P006 (A) ? (T) ? = (I) = (I) = = ? ? = = = I T = ? ? = G = = = = = = = = ? G = = = = = = = = = = = ? ? ? ? ? C G = C T G = = ? ? G ? = = (C) ? (G) ? = (D) = (D) = = ? ? = = = D G = ? ? = C = = = = = = = = ? A = = = = = = = = = = = ? ? ? ? ? A A = T C A = = ? ? A ? = = 0 P007 (A) ? (T) (T) = = = ? (C) = (T) ? = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = (C) = = = (G) = (C) (G) = (C) (T) (G) = = = = (G) = = = (C) ? (G) (C) = = = ? (T) = (A) ? = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = (T) = = = (C) = (A) (A) = (T) (C) (A) = = = = (A) = = = 0 P008 = ? = ? = = = = = = = = = = = = = = = = = ? = ? T T T = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = ? = ? C A A = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P009 A ? T T = = = = (T) = (A) = = = = ? = = = = = = = = = ? = = = = = = = = = = = (A) (G) (D) (G) = (T) = = = G = C ? ? C = G = = = ? ? = = = C ? G C = = = = (C) = (T) = = = = ? = = = = = = = = = ? = = = = = = = = = = = (G) (C) (I) (A) = (C) = = = C = A ? ? T = A = = = ? ? = = = 0 P010 = (A) = ? (G) = (A) (D) ? ? = ? = = = (D) (G) = (T) = = (C) = = = = = T = = C G C = = ? ? = = = = ? (C) = = = G = C G = C T G = = (G) (G) = (A) (T) (A) = (G) = ? (A) = (G) (I) ? ? = ? = = = (I) (T) = (G) = = (G) = = = = = G = = A A T = = ? ? = = = = ? (T) = = = C = A A = T C A = = (A) (A) = (G) (C) (T) 0 P011 = (A) = = (G) = (A) ? (T) = = A = = C = = = ? ? = = = = T T T = = = C = C C G G T A G ? G = T = = = = = C = = = T G = ? G G ? A T A = (G) = = (A) = (G) ? (C) = = G = = T = = = ? ? = = = = C A A = = = A = T T C A C G C ? A = C = = = = = A = = = C A = ? A A ? G C T 0 P012 A G T T = ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = (C) = = = = = (A) (A) = = C A G C = ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = (T) = = = = = (G) (G) = = 0 P013 = (A) = ? G = A D ? = ? = = = = = = = = = = = = = ? A A = = = ? ? ? = = = = = ? = = = (T) = = = = = = = = = (C) = = = (A) = = = (C) (T) = (G) = ? A = G I ? = ? = = = = = = = = = = = = = ? T T = = = ? ? ? = = = = = ? = = = (C) = = = = = = = = = (T) = = = (G) = = = (T) (A) 0 P014 ? = = ? = = = (I) ? ? = = = ? = = = = ? ? ? = = = ? = = = = = C G = = = = = = ? = = = T = T D C = A A ? ? ? ? ? A ? ? = = = = ? = = ? = = = (D) ? ? = = = ? = = = = ? ? ? = = = ? = = = = = A A = = = = = = ? = = = C = C I G = C G ? ? ? ? ? G ? ? = = = = 0 P015 = ? = (C) (A) = (G) = = = = = = = T I ? = = = ? ? ? ? T T T = C A ? G C T C A C = = = = C = I ? ? ? = = = A = T = A = = ? = ? = = = ? = (T) (G) = (A) = = = = = = = C D ? = = = ? ? ? ? C A A = A C ? A T C G G T = = = = A = D ? ? ? = = = T = C = G = = ? = ? = = 0 P016 (A) ? (T) ? = = = = ? = ? = T A = = T T = = = G C I = = = = = = ? A T = = = = G C = A = ? = = = = = = = = = = = = = = = = = = = (C) ? (G) ? = = = = ? = ? = C C = = G C = = = C A D = = = = = = ? G C = = = = A G = G = ? = = = = = = = = = = = = = = = = = = = 0 P017 = = = = ? (D) = = = = = = = ? ? (D) (G) = = (A) = = = = = = = (T) = = ? = (C) = = = = (G) (C) (I) (A) = (T) ? = ? (C) = = (A) = (T) = = = = = = (A) (A) = = = = = = ? (I) = = = = = = = ? ? (I) (T) = = (G) = = = = = = = (G) = = ? = (T) = = = = (A) (G) (D) (G) = (C) ? = ? (G) = = (G) = (C) = = = = = = (G) (G) = = 0 P018 = = = = (A) = (G) = ? = (T) = = ? ? D G = ? ? = = = = ? A A = = = A A T T C A C G ? ? A = C = = = = = A = = = C A = = A A = G C T = = = = (G) = (A) = ? = (A) = = ? ? I T = ? ? = = = = ? T T = = = C G C C G G T A ? ? G = T = = = = = C = = = T G = = G G = A T A 0 P019 = (A) = (C) = = = = ? G T = C C = = T T = = = G C I = = = = = = C G C = = = = A = D G A T = T ? = A = = A = T = A A = = = = = = = (G) = (T) = = = = ? A A = T A = = G C = = = C A D = = = = = = A A T = = = = G = I A C C = C ? = G = = T = C = G G = = = = = = 0 P020 = = = (C) = = = = = = = = = = C D G = G = T G = = ? A A = = = = = = = = = = (G) = (I) (A) (C) (C) (I) ? ? = = = = = = = = = (G) = = = = = = = = = (T) = = = = = = = = = = T I T = T = C C = = ? T T = = = = = = = = = = (A) = (D) (G) (A) (T) (D) ? ? = = = = = = = = = (A) = = = = = = 0 P021 = = = = = = (A) ? = = (A) = = = = = = = = = = = = = = ? = = = = = G = = = = = = = I A = = = = = = = = = = = = ? ? = = = = A = = = = = = = = (G) ? = = (T) = = = = = = = = = = = = = = ? = = = = = A = = = = = = = D G = = = = = = = = = = = = ? ? = = = = G = = 0 P022 = = = = A = G = = = = = = = = = = = = = = = = = T = T = ? ? = = = = = = = G C I A = = ? ? ? = A = = A = T = A = = = = = = = = = = = G = A = = = = = = = = = = = = = = = = = C = A = ? ? = = = = = = = A G D G = = ? ? ? = G = = T = C = G = = = = = = = 0 P023 = = = = A = G = T = A A = = C D G = G A T G = = = = = = = = = = = = = = = ? ? = = C C ? ? ? = G = = = = = = = = = = = = = = = = = = G = A = C = T G = = T I T = T G C C = = = = = = = = = = = = = = = ? ? = = A T ? ? ? = A = = = = = = = = = = = = = = 0 P024 (A) ? (T) = A = G I ? G T = = = = = = = G = = = = = = = = = A C = = = = = = = = = ? G A C ? ? ? = ? = = T = C = G = = = = = = = (C) ? (G) = G = A D ? A A = = = = = = = T = = = = = = = = = C A = = = = = = = = = ? A C T ? ? ? = ? = = A = T = A = = = = = = = 0 P025 (A) (G) (T) = = = G = ? G ? ? C C = ? T T T = = = = D = = = ? = = = = = ? ? ? ? ? ? ? = = C ? ? ? = G ? ? ? = = = = = = = G = = = (C) (A) (G) = = = A = ? A ? ? T A = ? G C G = = = = I = = = ? = = = = = ? ? ? ? ? ? ? = = T ? ? ? = A ? ? ? = = = = = = = A = = = 0 P026 (A) = (T) = (G) = (A) = (C) = (T) = T ? ? = (T) (T) (T) = (C) = (C) = = = = = = = (A) (A) (T) = = = = (G) (C) (I) (A) = (T) = (T) (D) = (A) = = (A) = (T) = (A) (A) = = (G) = = = (C) = (G) = (A) = (G) = (T) = (A) = C ? ? = (G) (C) (G) = (T) = (A) = = = = = = = (C) (G) (C) = = = = (A) (G) (D) (G) = (C) = (C) (I) = (G) = = (T) = (C) = (G) (G) = = (A) = = = 0 P027 = (A) (G) = = = A = ? A = = = = = = = = = = = = = = ? = = = (C) = = A T = = = = G C I A = = = C I = G = = T = C = G G = = = = = = = (G) (T) = = = G = ? G = = = = = = = = = = = = = = ? = = = (A) = = G C = = = = A G D G = = = T D = A = = A = T = A A = = = = = = 0 P028 (A) = (T) = = = = (D) (T) = (A) = = = = (D) (G) = (G) = = (G) = = (C) = = T = = C = = = = = = G C I A C C = = = = = = = = = = = = = = = = = ? ? (C) = (G) = = = = (I) (C) = (T) = = = = (I) (T) = (T) = = (C) = = (T) = = G = = A = = = = = = A G D G A T = = = = = = = = = = = = = = = = = ? ? 0 P029 = = = = = ? = = ? = ? = T A C D = T = A = = = = = = = ? = = A A T T C A C A G D = = = ? ? ? = G = = = = T = = = = G = A T A = = = = = ? = = ? = ? = C C T I = C = G = = = = = = = ? = = C G C C G G T G C I = = = ? ? ? = A = = = = C = = = = A = G C T 0 P030 = = = = = = = = (T) ? ? (A) = ? ? (D) (G) = (G) (A) = (G) = = ? ? = = = = C G C C G G T A = D = = C ? ? ? = = ? ? ? = (T) = = = = = (G) (G) ? ? = = = = = = = = (C) ? ? (G) = ? ? (I) (T) = (T) (G) = (C) = = ? ? = = = = A A T T C A C G = I = = T ? ? ? = = ? ? ? = (C) = = = = = (A) (A) ? ? 0 P031 = (A) = (C) = = = = = = (T) = = = (T) (I) (T) = = = = = = = (T) ? (T) = = = (C) (G) (C) = = = = A = D G = = = (T) (D) = (A) = = (A) = (T) = (A) (A) = = = = = = = (G) = (T) = = = = = = (A) = = = (C) (D) (G) = = = = = = = (C) ? (A) = = = (A) (A) (T) = = = = G = I A = = = (C) (I) = (G) = = (T) = (C) = (G) (G) = = = = = = 0 P032 = = = = = = = = = = = (G) (C) (C) (T) = = = = = = = = = = = = = = = (A) = (T) = = = = (A) = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = (A) (T) (A) (C) = = = = = = = = = = = = = = = (C) = (C) = = = = (G) = = = = = = = = = = = = = = (T) = = = = = = = = = 0 P033 (A) = (T) = = = = = = = = = = = = = = = (T) = = (C) = = = = = = = = = = = = = = = ? = = ? ? (C) = = = = ? = = = ? ? ? ? = = = = (A) = = (C) = (G) = = = = = = = = = = = = = = = (G) = = (G) = = = = = = = = = = = = = = = ? = = ? ? (T) = = = = ? = = = ? ? ? ? = = = = (G) = = 0 P034 = A = C G = = D ? G ? = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = T A = = I ? A ? = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 P035 (A) (G) (T) (T) = = = = (C) = (T) = = = (T) (I) (T) = = = = = = = (T) (T) (T) = = = (C) (G) (C) = = = = = = = = = = = = = (C) = (A) (A) = (T) (C) (A) = = = = (A) = = = (C) (A) (G) (C) = = = = (T) = (A) = = = (C) (D) (G) = = = = = = = (C) (A) (A) = = = (A) (A) (T) = = = = = = = = = = = = = (G) = (C) (G) = (C) (T) (G) = = = = (G) = = = 0 P036 (A) = (T) = = = = = = = = = = = = = = = = = (T) = = = = ? = = = = = = = = = = = = = = = = C = ? I = G = = T = C = G G = = = = = = (C) = (G) = = = = = = = = = = = = = = = = = (C) = = = = ? = = = = = = = = = = = = = = = = T = ? D = A = = A = T = A A = = = = = = 0 P037 (A) (G) (T) (T) = = = = ? (G) ? = = = (C) (D) (G) = (G) = = (G) = = (C) (A) (A) ? = = (A) (A) (T) ? ? ? ? ? = ? ? ? = = = = ? ? (C) (G) = ? ? ? ? = = = (G) = ? ? (C) (A) (G) (C) = = = = ? (A) ? = = = (T) (I) (T) = (T) = = (C) = = (T) (T) (T) ? = = (C) (G) (C) ? ? ? ? ? = ? ? ? = = = = ? ? (A) (A) = ? ? ? ? = = = (A) = ? ? 0 P038 = = = = (A) ? = (I) = = ? = = ? = I T = = = = = = = ? = = = = = ? = C = = = = G C I ? = = ? ? ? = A = = A = T = A = G = A = = = = = = = (G) ? = (D) = = ? = = ? = D G = = = = = = = ? = = = = = ? = T = = = = A G D ? = = ? ? ? = G = = T = C = G = A = G = = = 0 P039 = (A) = (C) = = = = (C) = = = = = = = = = = = = = = = (C) (A) (A) = = = (C) (G) (C) = = = = (A) (G) (D) (G) = = = = = (C) = (A) (A) = (T) (C) (A) = = = = (A) = = = = (G) = (T) = = = = (T) = = = = = = = = = = = = = = = (T) (T) (T) = = = (A) (A) (T) = = = = (G) (C) (I) (A) = = = = = (G) = (C) (G) = (C) (T) (G) = = = = (G) = = = 0 P040 ? (G) (T) (T) = = = = (C) = ? = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (G) (G) = (A) ? ? ? (A) (G) (C) = = = = (T) = ? = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (A) (A) = (G) ? ? 0 P041 = = = = A ? = I ? A ? G = = = ? ? = ? ? = = = = = = = = ? ? A A T T C A C = = = ? ? ? = ? ? ? ? ? ? = ? = ? ? = A = = = = = = = = = G ? = D ? G ? A = = = ? ? = ? ? = = = = = = = = ? ? C G C C G G T = = = ? ? ? = ? ? ? ? ? ? = ? = ? ? = G = = = = = 0 P042 = = = = = (D) = (D) = = ? = = = = = = = (T) = = (C) = = = ? = = = = C = C T C A C ? C ? ? ? = = = = = = = = = = = = = = = A = G C T = = = = = (I) = (I) = = ? = = = = = = = (G) = = (G) = = = ? = = = = A = T C G G T ? G ? ? ? = = = = = = = = = = = = = = = G = A T A 0 P043 A G T ? = ? = = ? = (T) ? = ? = = = ? (T) ? (C) (C) = = ? = = = = = = = = = = = = = = = = C C = = = G ? C G = ? = ? ? = = = G G = = C A G ? = ? = = ? = (A) ? = ? = = = ? (G) ? (T) (G) = = ? = = = = = = = = = = = = = = = = A T = = = C ? A A = ? = ? ? = = = A A = = 0 P044 (A) (G) (T) = = = = = ? ? = (G) = ? = (I) (T) = = (G) ? ? = ? ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (A) (A) ? (G) (C) (T) (C) (A) (G) = = = = = ? ? = (A) = ? = (D) (G) = = (A) ? ? = ? ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (G) (G) ? (A) (T) (A) 0 P045 (A) (G) (T) (T) = = = = (T) = ? = = = C D G ? G = = G = = = A A = = = = = = = = = = (G) = (I) (A) = (C) = = = = = = = = = = = = = = = = = ? ? (C) (A) (G) (C) = = = = (C) = ? = = = T I T ? T = = C = = = T T = = = = = = = = = = (A) = (D) (G) = (T) = = = = = = = = = = = = = = = = = ? ? 0 P046 = (A) (G) (C) = = = = = = ? = = = = = = = (T) = = (C) = = = ? = T = = C G C = = = = = = = = = = = = = = (G) = = = (C) = = = = = = = = = = = (G) (T) (T) = = = = = = ? = = = = = = = (G) = = (G) = = = ? = G = = A A T = = = = = = = = = = = = = = (A) = = = (T) = = = = = = = = = = 0 P047 = = = = = ? = = = = (A) = = = (T) (I) (T) = = = = = = = ? (T) (T) = = = ? (G) (C) = = = = (A) (G) (D) (G) = (T) = (T) (D) = (A) = = (A) = (T) = (A) (A) = = (G) = = = = = = = = ? = = = = (T) = = = (C) (D) (G) = = = = = = = ? (A) (A) = = = ? (A) (T) = = = = (G) (C) (I) (A) = (C) = (C) (I) = (G) = = (T) = (C) = (G) (G) = = (A) = = = 0 P048 ? = = = (A) = (G) (I) = = ? = = ? = = = = = = = = = = = = = = = = ? G C = = = = ? ? (D) (G) (A) (T) = = = = = = = = = = = = = A A ? G C T ? = = = (G) = (A) (D) = = ? = = ? = = = = = = = = = = = = = = = = ? A T = = = = ? ? (I) (A) (C) (C) = = = = = = = = = = = = = G G ? A T A 0 P049 ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? ? ? T = = = = ? = = = = = ? ? = = = = = ? ? ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? ? ? C = = = = ? = = = = = ? ? = = = = = ? ? 0 P050 = = = = = = = = = = = = = = (T) (I) (T) = (T) (G) = (C) = = = = = (G) = = (A) = (T) = = = = (G) = (I) (A) = (C) = = = C = A A = T C A = = = = A = = = = = = = = = = = = = = = = = (C) (D) (G) = (G) (A) = (G) = = = = = (T) = = (C) = (C) = = = = (A) = (D) (G) = (T) = = = G = C G = C T G = = = = G = = = 0 P051 = = = = (A) = (G) (I) = = ? = = = = = = = (G) = = (G) = = = = = = = = = = = = = = = = = = = (A) (T) I ? ? C A A A A T = A = = = = = = = = = = = = (G) = (A) (D) = = ? = = = = = = = (T) = = (C) = = = = = = = = = = = = = = = = = = = (C) (C) D ? ? G G C G T C = G = = = = = = = = 0 P052 ? = (T) = = = = (D) ? = (A) = = = = = = ? = = = = = = = ? = = = = (A) (A) (T) = = = = = = = = (C) = = = = G = C G = C T G = = G G = A T A ? = (G) = = = = (I) ? = (T) = = = = = = ? = = = = = = = ? = = = = (C) (G) (C) = = = = = = = = (A) = = = = C = A A = T C A = = A A = G C T 0 P053 = = = = = = = (I) ? = T = = ? ? = = = = = = = = = = = = = = = = ? ? = = = = = = = ? ? = = = = = ? = = = = = ? ? = = = = (A) = = = = = = = = = (D) ? = A = = ? ? = = = = = = = = = = = = = = = = ? ? = = = = = = = ? ? = = = = = ? = = = = = ? ? = = = = (G) = = 0 P054 = = = ? (A) = (G) = (T) ? ? = = = = = = = = = = = = = ? ? = = = = (A) (A) (T) = = = = (G) (C) (I) (A) = (C) I ? ? = = = = = = = = = G = = = = = = = = = ? (G) = (A) = (C) ? ? = = = = = = = = = = = = = ? ? = = = = (C) (G) (C) = = = = (A) (G) (D) (G) = (T) D ? ? = = = = = = = = = A = = = = = = 0 P055 ? = T = G = A D ? = T = = = = = = = = = = = = = = (A) (A) = = = (A) (A) (T) = = ? ? ? ? ? = = (C) = = = = = = = = = = = = = = = = = = = ? = G = A = G I ? = A = = = = = = = = = = = = = = (T) (T) = = = (C) (G) (C) = = ? ? ? ? ? = = (T) = = = = = = = = = = = = = = = = = = = 0 P056 = = = = = (I) (A) (I) = = ? A = = C D G = G A = G = = = = = = = = ? A T T = A C A = D G = = = = ? = ? = ? = = = = G = = = A = = = = = = = = (D) (G) (D) = = ? G = = T I T = T G = C = = = = = = = = ? G C C = G T G = I A = = = = ? = ? = ? = = = = A = = = G = = = 0 P057 = = = = A = G I T = ? G = = T I T = = G = = = = = = = = ? ? ? ? ? T C = C = = ? = = C I ? ? = A ? = A = T = = = = = = = = = = = = = G = A D C = ? A = = C D G = = A = = = = = = = = ? ? ? ? ? C G = T = = ? = = T D ? ? = G ? = T = C = = = = = = = = = 0 P058 ? (G) (T) = (A) = (G) (I) ? = (A) = = = = = = = = = = = = = ? = = = = = = = = = = = = (A) (G) (D) (G) = (C) = = = = = = = = = = = = = = = = = = = ? (A) (G) = (G) = (A) (D) ? = (T) = = = = = = = = = = = = = ? = = = = = = = = = = = = (G) (C) (I) (A) = (T) = = = = = = = = = = = = = = = = = = = 0 P059 ? = (T) = = = = = = = (T) = (C) (C) = = (G) (C) (G) = = = (A) (D) = = = = (C) (A) = = = (T) (C) (A) (C) = = = = = = I ? ? = A ? = A = = A A = = = = = C T ? = (G) = = = = = = = (A) = (T) (A) = = (T) (T) (T) = = = (C) (I) = = = = (A) (C) = = = (C) (G) (G) (T) = = = = = = D ? ? = G ? = T = = G G = = = = = T A 0 P060 (A) (G) (T) (T) (G) = (A) (D) ? = = = = = = = = = (G) = = (G) = = ? = = = = = ? (G) = = = = = = = = = = (C) = = ? C = A A = T C A = = = = A = = = (C) (A) (G) (C) (A) = (G) (I) ? = = = = = = = = = (T) = = (C) = = ? = = = = = ? (A) = = = = = = = = = = (T) = = ? G = C G = C T G = = = = G = = = 0 P061 (A) (G) (T) (T) = = (A) = ? (A) = ? = = (C) (D) (G) ? (G) (A) = (G) = = = = = = = = = = C C G G T = ? D = A = = = = C = A A = T = A = = (A) (A) = (G) (C) (T) (C) (A) (G) (C) = = (G) = ? (G) = ? = = (T) (I) (T) ? (T) (G) = (C) = = = = = = = = = = T T C A C = ? I = C = = = = G = C G = C = G = = (G) (G) = (A) (T) (A) 0 P062 A G T T = = = D = = = = = = = = = ? G = = G = = = ? = = ? ? = = = = = = = = = = = = = ? ? ? G G C G T C = G G = = = G = = = C A G C = = = I = = = = = = = = = ? T = = C = = = ? = = ? ? = = = = = = = = = = = = = ? ? ? C A A A A T = A A = = = A = = = 0 P063 (A) (G) (T) (T) (A) = (G) (I) (C) = = (G) = = (T) (I) (T) = = (G) = = = = ? = = G = = A A T = = = = = = = = A T I ? ? C A A A A T = A A = = = A = = = (C) (A) (G) (C) (G) = (A) (D) (T) = = (A) = = (C) (D) (G) = = (A) = = = = ? = = T = = C G C = = = = = = = = C C D ? ? G G C G T C = G G = = = G = = = 0 P064 = = = = = = = = = ? = = = = T I T = = = = = = = T = T = = = ? = T T C A C A G D G = T ? ? ? = = = = = = = = = = = = = = ? ? = = = = = = = = = ? = = = = C D G = = = = = = = C = A = = = ? = C C G G T G C I A = C ? ? ? = = = = = = = = = = = = = = ? ? 0 P065 ? = = = = = = = = ? = = = = = = = = = = = = = = = = = = (A) (C) (C) (G) (C) = = = = (G) = ? ? ? ? = = = = = = = = = = = = = (A) (A) = = (C) (T) ? = = = = = = = = ? = = = = = = = = = = = = = = = = = = (C) (A) (A) (A) (T) = = = = (A) = ? ? ? ? = = = = = = = = = = = = = (G) (G) = = (T) (A) 0 P066 = = = (C) = = = = = = (A) = = = (C) (D) (G) = = = = = = = (C) (A) (A) = = = (A) (A) (T) = = = = = = = = = (C) = (C) (I) = (G) = = (T) = (C) = (G) (G) = = = = = = = = = (T) = = = = = = (T) = = = (T) (I) (T) = = = = = = = (T) (T) (T) = = = (C) (G) (C) = = = = = = = = = (T) = (T) (D) = (A) = = (A) = (T) = (A) (A) = = = = = = 0 P067 ? = (T) = = = = (D) (T) = ? = = = = = = = = = = = = = ? = = = (A) (C) = = = = = = = G C ? ? = = = C I = G = = T = C = G G = = = = ? ? ? = (G) = = = = (I) (C) = ? = = = = = = = = = = = = = ? = = = (C) (A) = = = = = = = A G ? ? = = = T D = A = = A = T = A A = = = = ? ? 0 P068 (A) = (T) (C) = = = = (T) = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = (I) (A) (C) (C) = = = = = = = = = = = = = = = = = = = (C) = (G) (T) = = = = (C) = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = (D) (G) (A) (T) = = = = = = = = = = = = = = = = = = = 0 P069 = (A) = ? ? ? A = = = (T) = = = = = = = = = = = = = = ? = = = = = = = = = = = (G) ? = = (A) (T) = = = = = = = = = = = = = = = = = = = = (G) = ? ? ? G = = = (A) = = = = = = = = = = = = = = ? = = = = = = = = = = = (A) ? = = (C) (C) = = = = = = = = = = = = = = = = = = = 0 P070 = = = = (A) = (G) (I) ? = = = = = = = ? = (T) = = (C) = = = ? ? = = = = = = = = = = = = ? = = C = C I = G = = T = C = G G = = = = = = = = = = (G) = (A) (D) ? = = = = = = = ? = (G) = = (G) = = = ? ? = = = = = = = = = = = = ? = = T = T D = A = = A = T = A A = = = = = = 0 P071 (A) (G) (T) (T) = = = = = = = = = ? = = = = = = (C) = = = = = = = = = ? = = = = = = ? = = = = (C) = ? ? = G = = T = C = G G = = = = = = (C) (A) (G) (C) = = = = = = = = = ? = = = = = = (T) = = = = = = = = = ? = = = = = = ? = = = = (T) = ? ? = A = = A = T = A A = = = = = = 0 P072 = = = = = = = I C = T = T A = = T T T = = = C I = = = = = = ? = = = = = = = = = = = (T) (I) ? ? = (A) = = (A) = (T) = (A) = = = (A) = = = = = = = = = = D T = A = C C = = G C G = = = A D = = = = = = ? = = = = = = = = = = = (C) (D) ? ? = (G) = = (T) = (C) = (G) = = = (G) = = = 0 P073 (A) ? (T) (T) = = = = (T) ? ? = = = (C) (D) (G) = (G) = = (G) = = (C) (A) (A) = C A ? A T = = = = = = I A C = = = = G = ? G = C T G = = = = G = = = (C) ? (G) (C) = = = = (C) ? ? = = = (T) (I) (T) = (T) = = (C) = = (T) (T) (T) = A C ? G C = = = = = = D G A = = = = C = ? A = T C A = = = = A = = = 0 P074 A G T T = ? A I ? A = = = = = = = ? T = = C = = = = = T = = C G C = = = = = = = = C = = C I G G C G T C = G G G = = G = = = C A G C = ? G D ? G = = = = = = = ? G = = G = = = = = G = = A A T = = = = = = = = A = = T D C A A A A T = A A A = = A = = = 0 P075 = (A) = (C) = = = = = = ? = (C) (C) = = (G) (C) = = = (C) (A) (D) = ? = = (A) (C) C G C = = = = A G D G A = = = = = = = = = = = = = = = = = = = = = (G) = (T) = = = = = = ? = (T) (A) = = (T) (T) = = = (G) (C) (I) = ? = = (C) (A) A A T = = = = G C I A C = = = = = = = = = = = = = = = = = = = = 0 P076 = = = = (A) = (G) = (T) = = = = = = = = = = = = = = = = = = = = = A A T = = = = ? ? = = = C = ? I G = C G T = = G G G = = G = = = = = = = (G) = (A) = (C) = = = = = = = = = = = = = = = = = = = = = C G C = = = = ? ? = = = T = ? D C = A A A = = A A A = = A = = = 0 P077 (A) = (T) = = = = (D) = = ? = = = = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = (T) = = = = = = = = = (C) = = = A A = G ? ? (C) = (G) = = = = (I) = = ? = = = = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = (C) = = = = = = = = = (T) = = = G G = A ? ? 0 P078 = = = = (G) = (A) (D) (T) = (A) = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = ? G G A A T A = = = = (A) = (G) (I) (C) = (T) = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = ? A A G G C T 0 P079 (A) (G) (T) = = = = = = = ? = (C) (C) = = (G) (C) = = = (C) (A) (D) ? = = = = = = = = = = = = A = = = (A) = = = = = = ? = = = (T) = = = (G) (G) = (A) ? ? (C) (A) (G) = = = = = = = ? = (T) (A) = = (T) (T) = = = (G) (C) (I) ? = = = = = = = = = = = = G = = = (C) = = = = = = ? = = = (C) = = = (A) (A) = (G) ? ? 0 P080 = ? = = = = = (I) = = (A) (A) = = (C) (D) (G) = = (A) = = = = = = = = = = = = = (T) (C) (A) = (G) = (I) (A) = = ? ? ? = (A) = = (A) = (T) = = = = = = = = = = ? = = = = = (D) = = (T) (G) = = (T) (I) (T) = = (G) = = = = = = = = = = = = = (C) (G) (G) = (A) = (D) (G) = = ? ? ? = (G) = = (T) = (C) = = = = = = = = = 0 P081 ? ? (T) (T) = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = (C) (C) = = = G = C G = C T G = = G G = A ? ? ? ? (G) (C) = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = (A) (T) = = = C = A A = T C A = = A A = G ? ? 0 P082 ? ? = = = = = = (T) = (A) = (C) (C) = = (G) (C) = = = (C) (A) (D) = = = = = = = = = = = = = ? ? = = (A) (T) = = = (C) ? (A) (A) = (T) (C) (A) = = = = (A) (A) ? ? ? ? = = = = = = (C) = (T) = (T) (A) = = (T) (T) = = = (G) (C) (I) = = = = = = = = = = = = = ? ? = = (C) (C) = = = (G) ? (C) (G) = (C) (T) (G) = = = = (G) (G) ? ? 0 P083 (A) ? (T) (T) = = = (I) = = = = = = = = = = = = = = = = ? = = (T) = = ? = = = = = = = = = = C C = = = G = C G = C = G = = = = G G = = (C) ? (G) (C) = = = (D) = = = = = = = = = = = = = = = = ? = = (G) = = ? = = = = = = = = = = A T = = = C = A A = T = A = = = = A A = = 0 P084 (A) (G) (T) (T) ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (T) ? = ? = = = = = = = = = = A A = G C T (C) (A) (G) (C) ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = (C) ? = ? = = = = = = = = = = G G = A T A 0 P085 ? (G) (T) (T) (A) = (G) (I) = = = = = = = = = = = = = = = = = = = (T) = = ? (G) (C) = = = = = = = = (C) (C) = C I G G C G T C = G G G = = = = = = ? (A) (G) (C) (G) = (A) (D) = = = = = = = = = = = = = = = = = = = (G) = = ? (A) (T) = = = = = = = = (A) (T) = T D C A A A A T = A A A = = = = = = 0 P086 (A) (G) (T) (T) (A) = (G) (I) (C) = = = = = = (I) (T) = (G) = = (G) = = = = = = (A) (C) C G C C G G = ? = ? G = C = (C) (I) = (G) = = (T) = (C) = (G) (G) = = (A) = ? ? (C) (A) (G) (C) (G) = (A) (D) (T) = = = = = = (D) (G) = (T) = = (C) = = = = = = (C) (A) A A T T C A = ? = ? A = T = (T) (D) = (A) = = (A) = (T) = (A) (A) = = (G) = ? ? 0 P087 = ? = = = = = = ? = ? = = = = D G = = = = C = = ? = = = A C C = C = = = = G = D G = = = = = = = = = = = = = = = = = ? ? = = = ? = = = = = = ? = ? = = = = I T = = = = G = = ? = = = C A A = T = = = = A = I A = = = = = = = = = = = = = = = = = ? ? = = 0 P088 = ? = C = ? A I ? A ? = T A = = T T T = = = C I = ? = = = = = G = = = = = = = = = = = (D) ? ? = = = = = = = = (A) (A) G = = = = = = ? = T = ? G D ? G ? = C C = = G C G = = = A D = ? = = = = = A = = = = = = = = = = = (I) ? ? = = = = = = = = (G) (G) A = = = = = 0 P089 ? ? = = = (I) = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = D ? ? = G = = T = C = = = (G) = = (A) (T) (A) ? ? = = = (D) = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = I ? ? = A = = A = T = = = (A) = = (G) (C) (T) 0 P090 = ? = (T) = = = = (C) = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = (C) (C) = T D = A = = A = T = A A = = = = = = = ? = (C) = = = = (T) = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = (A) (T) = C I = G = = T = C = G G = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS ? ? = ? 0.64 = 0.64 0.64 ? 0.64 0.56 = = = = ? ? = = = = ? = ? = = = 1.00 ? ? = = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 ? = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = ? ? = = = = ? = ? = = = 1.00 = = = = = = 1.00 ? ? = 1.00 = ? ? ? ? 1.00 ? ? ? 1.00 1.00 ? ? ? ? ? ? ? ? ? 1.00 1.00 = ? ? = = 1.00 1.00 1.00 1.00 ? = 1.00 1.00 = = = = ? 1.00 = = 0.86 0.86 0.86 ? = ? = 0.99 1.00 = ? ? 1.00 1.00 = = = = ? ? 1.00 ? = ? ? ? = = 1.00 1.00 ? = = = = = = 1.00 = 1.00 ? ? ? = 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = = ? = 1.00 1.00 = = = ? = = = = ? 1.00 = = = = = = = ? 0.74 0.74 = 0.74 = = ? = = = = = = = = = = = = 1.00 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = = = = 0.74 = = 0.52 ? 0.52 ? = = = = 0.52 = 0.52 = = = = = = = 0.57 = 0.57 ? ? ? = = = = = = = = = = = = = = = = = = = = 0.99 0.99 0.99 0.99 0.99 0.99 0.99 0.99 = 0.99 0.99 ? = = ? = = = 0.53 ? 0.53 ? = 0.73 = 0.73 = = ? ? = = = 1.00 1.00 = ? ? = 1.00 = = = = = = = = ? 1.00 = = = = = = = = = = = ? ? ? ? ? 1.00 1.00 = 1.00 1.00 1.00 = = ? ? 1.00 ? = = 0.64 ? 0.64 0.64 = = = ? 0.61 = 0.61 ? = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = 0.64 = = = 0.87 = 0.87 0.87 = 0.87 0.87 0.87 = = = = 0.87 = = = = ? = ? = = = = = = = = = = = = = = = = = ? = ? 1.00 1.00 1.00 = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 ? 1.00 0.99 = = = = 0.53 = 0.53 = = = = ? = = = = = = = = = ? = = = = = = = = = = = 0.70 0.70 0.70 0.70 = 0.78 = = = 1.00 = 1.00 ? ? 1.00 = 1.00 = = = ? ? = = = = 0.53 = ? 0.58 = 0.58 0.58 ? ? = ? = = = 0.55 0.55 = 0.55 = = 0.55 = = = = = 0.90 = = 0.90 0.90 0.90 = = ? ? = = = = ? 0.82 = = = 0.92 = 0.92 0.92 = 0.92 0.92 0.92 = = 0.79 0.79 = 0.79 0.79 0.79 = 0.55 = = 0.57 = 0.57 ? 0.84 = = 0.99 = = 0.99 = = = ? ? = = = = 0.99 0.99 0.99 = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = 1.00 = = = = = 1.00 = = = 1.00 1.00 = ? 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = 0.55 = = = = = 0.54 0.54 = = = 0.88 = ? 0.97 = 0.97 0.97 ? = ? = = = = = = = = = = = = = ? 1.00 1.00 = = = ? ? ? = = = = = ? = = = 0.54 = = = = = = = = = 0.54 = = = 0.54 = = = 0.54 0.54 ? = = ? = = = 0.53 ? ? = = = ? = = = = ? ? ? = = = ? = = = = = 1.00 1.00 = = = = = = ? = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 ? ? ? ? ? 1.00 ? ? = = = = = ? = 0.76 0.74 = 0.74 = = = = = = = 1.00 1.00 ? = = = ? ? ? ? 1.00 1.00 1.00 = 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 ? ? ? = = = 1.00 = 1.00 = 1.00 = = ? = ? = = 0.63 ? 0.63 ? = = = = ? = ? = 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = ? 1.00 1.00 = = = = 1.00 1.00 = 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = ? 0.51 = = = = = = = ? ? 0.81 0.81 = = 0.81 = = = = = = = 0.88 = = ? = 0.88 = = = = 0.58 0.58 0.58 0.58 = 0.76 ? = ? 0.64 = = 0.64 = 0.64 = = = = = = 0.64 0.64 = = = = = = 0.69 = 0.69 = ? = 0.76 = = ? ? 1.00 1.00 = ? ? = = = = ? 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 = 1.00 = = = = = 1.00 = = = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = 0.52 = 0.53 = = = = ? 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = 1.00 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 ? = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = 0.58 = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = ? 1.00 1.00 = = = = = = = = = = 0.69 = 0.69 0.69 0.69 0.57 0.54 ? ? = = = = = = = = = 0.54 = = = = = = = = = = = = 0.60 ? = = 0.61 = = = = = = = = = = = = = = ? = = = = = 1.00 = = = = = = = 1.00 1.00 = = = = = = = = = = = = ? ? = = = = 1.00 = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 = 1.00 = ? ? = = = = = = = 1.00 1.00 1.00 1.00 = = ? ? ? = 1.00 = = 1.00 = 1.00 = 1.00 = = = = = = = = = = = 0.98 = 0.98 = 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = ? ? = = 1.00 1.00 ? ? ? = 1.00 = = = = = = = = = = = = = = 0.89 ? 0.89 = 0.96 = 0.96 0.96 ? 1.00 1.00 = = = = = = = 1.00 = = = = = = = = = 1.00 1.00 = = = = = = = = = ? 1.00 1.00 0.92 ? ? ? = ? = = 1.00 = 1.00 = 1.00 = = = = = = = 0.85 0.86 0.85 = = = 0.98 = ? 1.00 ? ? 1.00 1.00 = ? 1.00 1.00 1.00 = = = = 1.00 = = = ? = = = = = ? ? ? ? ? ? ? = = 1.00 ? ? ? = 1.00 ? ? ? = = = = = = = 1.00 = = = 0.59 = 0.59 = 0.84 = 0.84 = 0.85 = 0.85 = 0.92 ? ? = 0.89 0.89 0.89 = 0.89 = 0.89 = = = = = = = 0.74 0.74 0.74 = = = = 0.69 0.69 0.69 0.69 = 0.60 = 0.61 0.61 = 0.61 = = 0.61 = 0.61 = 0.61 0.61 = = 0.65 = = = = 0.58 0.58 = = = 0.95 = ? 0.99 = = = = = = = = = = = = = = ? = = = 0.90 = = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = = = 0.55 = 0.55 = = = = 0.55 0.52 = 0.52 = = = = 0.70 0.70 = 0.55 = = 0.55 = = 0.68 = = 0.95 = = 0.95 = = = = = = 0.95 0.95 0.95 0.95 0.95 0.95 = = = = = = = = = = = = = = = = = ? ? = = = = = ? = = ? = ? = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = ? = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = ? ? ? = 1.00 = = = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = 0.79 ? ? 0.69 = ? ? 0.69 0.69 = 0.69 0.69 = 0.69 = = ? ? = = = = 0.95 0.95 0.95 0.95 0.95 0.95 0.95 0.95 = 0.95 = = 0.95 ? ? ? = = ? ? ? = 0.84 = = = = = 0.71 0.71 ? ? = 0.56 = 0.56 = = = = = = 0.53 = = = 0.72 0.72 0.72 = = = = = = = 0.72 ? 0.72 = = = 0.78 0.78 0.78 = = = = 0.94 = 0.94 0.94 = = = 0.88 0.88 = 0.88 = = 0.88 = 0.88 = 0.88 0.88 = = = = = = = = = = = = = = = = = 0.89 0.89 0.89 0.89 = = = = = = = = = = = = = = = 0.84 = 0.84 = = = = 0.74 = = = = = = = = = = = = = = 0.67 = = = = = = = = = 0.69 = 0.69 = = = = = = = = = = = = = = = 0.86 = = 0.86 = = = = = = = = = = = = = = = ? = = ? ? 0.71 = = = = ? = = = ? ? ? ? = = = = 0.59 = = = 0.99 = 0.99 1.00 = = 1.00 ? 1.00 ? = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.65 0.65 0.65 0.65 = = = = 0.68 = 0.68 = = = 0.78 0.78 0.78 = = = = = = = 0.78 0.78 0.78 = = = 0.72 0.72 0.72 = = = = = = = = = = = = = 0.70 = 0.70 0.70 = 0.70 0.70 0.70 = = = = 0.68 = = = 0.56 = 0.56 = = = = = = = = = = = = = = = = = 0.62 = = = = ? = = = = = = = = = = = = = = = = 0.91 = ? 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = = = 0.74 0.74 0.74 0.74 = = = = ? 0.58 ? = = = 0.62 0.62 0.62 = 0.62 = = 0.62 = = 0.62 0.62 0.62 ? = = 0.76 0.76 0.76 ? ? ? ? ? = ? ? ? = = = = ? ? 0.74 0.74 = ? ? ? ? = = = 0.74 = ? ? = = = = 0.70 ? = 0.70 = = ? = = ? = 1.00 1.00 = = = = = = = ? = = = = = ? = 1.00 = = = = 1.00 1.00 1.00 ? = = ? ? ? = 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 = = = = 0.51 = 0.51 = = = = 0.61 = = = = = = = = = = = = = = = 0.70 0.70 0.70 = = = 0.81 0.81 0.81 = = = = 0.73 0.73 0.73 0.73 = = = = = 0.86 = 0.86 0.86 = 0.86 0.86 0.86 = = = = 0.86 = = = ? 0.67 0.67 0.67 = = = = 0.78 = ? = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0.80 0.80 = 0.80 ? ? = = = = 1.00 ? = 1.00 ? 1.00 ? 1.00 = = = ? ? = ? ? = = = = = = = = ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = ? ? ? = ? ? ? ? ? ? = ? = ? ? = 1.00 = = = = = = = = = = 0.56 = 0.56 = = ? = = = = = = = 0.70 = = 0.70 = = = ? = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 ? 1.00 ? ? ? = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? = ? = = ? = 0.58 ? = ? = = = ? 0.58 ? 0.58 0.58 = = ? = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 ? 1.00 1.00 = ? = ? ? = = = 1.00 1.00 = = 0.72 0.72 0.72 = = = = = ? ? = 0.75 = ? = 0.75 0.75 = = 0.75 ? ? = ? ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 0.81 0.81 ? 0.81 0.81 0.81 0.62 0.62 0.62 0.62 = = = = 0.74 = ? = = = 0.94 0.94 0.94 ? 0.94 = = 0.94 = = = 0.94 0.94 = = = = = = = = = = 0.60 = 0.60 0.60 = 0.60 = = = = = = = = = = = = = = = = = ? ? = 0.62 0.62 0.62 = = = = = = ? = = = = = = = 0.69 = = 0.69 = = = ? = 0.94 = = 0.93 0.93 0.93 = = = = = = = = = = = = = = 0.74 = = = 0.74 = = = = = = = = = = = = = = = ? = = = = 0.67 = = = 0.78 0.78 0.78 = = = = = = = ? 0.78 0.78 = = = ? 0.85 0.85 = = = = 0.88 0.88 0.88 0.88 = 0.75 = 0.87 0.87 = 0.87 = = 0.87 = 0.87 = 0.87 0.87 = = 0.51 = = = ? = = = 0.57 = 0.57 0.57 = = ? = = ? = = = = = = = = = = = = = = = = ? 0.92 0.92 = = = = ? ? 0.83 0.83 0.83 0.56 = = = = = = = = = = = = = 0.92 0.92 ? 0.92 0.92 0.92 ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = ? ? ? 0.91 = = = = ? = = = = = ? ? = = = = = ? ? = = = = = = = = = = = = = = 0.65 0.65 0.65 = 0.65 0.65 = 0.65 = = = = = 0.60 = = 0.62 = 0.62 = = = = 0.67 = 0.67 0.67 = 0.58 = = = 0.90 = 0.90 0.90 = 0.90 0.90 0.90 = = = = 0.90 = = = = = = = 0.50 = 0.50 0.50 = = ? = = = = = = = 0.55 = = 0.55 = = = = = = = = = = = = = = = = = = = 0.86 0.88 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = ? = 0.51 = = = = 0.56 ? = 0.57 = = = = = = ? = = = = = = = ? = = = = 0.56 0.56 0.56 = = = = = = = = 0.68 = = = = 0.99 = 0.99 0.99 = 0.99 0.99 0.99 = = 0.98 0.98 = 0.98 0.98 0.98 = = = = = = = 0.75 ? = 0.90 = = ? ? = = = = = = = = = = = = = = = = ? ? = = = = = = = ? ? = = = = = ? = = = = = ? ? = = = = 0.64 = = = = = ? 0.59 = 0.59 = 0.57 ? ? = = = = = = = = = = = = = ? ? = = = = 0.89 0.89 0.89 = = = = 0.83 0.83 0.83 0.83 = 0.81 0.96 ? ? = = = = = = = = = 0.96 = = = = = = ? = 0.90 = 0.94 = 0.94 0.94 ? = 0.90 = = = = = = = = = = = = = = 0.72 0.72 = = = 0.61 0.61 0.61 = = ? ? ? ? ? = = 0.59 = = = = = = = = = = = = = = = = = = = = = = = = 0.61 0.62 0.61 = = ? 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = = = ? 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = ? = ? = ? = = = = 1.00 = = = 1.00 = = = = = = = 1.00 = 1.00 1.00 1.00 = ? 0.91 = = 0.91 0.91 0.91 = = 0.91 = = = = = = = = ? ? ? ? ? 1.00 1.00 = 1.00 = = ? = = 1.00 1.00 ? ? = 1.00 ? = 1.00 = 1.00 = = = = = = = = = ? 0.73 0.73 = 0.78 = 0.78 0.78 ? = 0.78 = = = = = = = = = = = = = ? = = = = = = = = = = = = 0.76 0.76 0.76 0.76 = 0.63 = = = = = = = = = = = = = = = = = = = ? = 0.53 = = = = = = = 0.59 = 0.63 0.63 = = 0.63 0.63 0.63 = = = 0.63 0.63 = = = = 0.68 0.68 = = = 0.81 0.81 0.81 0.81 = = = = = = 0.92 ? ? = 0.92 ? = 0.92 = = 0.92 0.92 = = = = = 0.92 0.92 0.56 0.56 0.56 0.56 0.63 = 0.63 0.63 ? = = = = = = = = = 0.58 = = 0.58 = = ? = = = = = ? 0.53 = = = = = = = = = = 0.56 = = ? 0.93 = 0.93 0.93 = 0.93 0.93 0.93 = = = = 0.93 = = = 0.56 0.56 0.56 0.56 = = 0.69 = ? 0.69 = ? = = 0.69 0.69 0.69 ? 0.69 0.69 = 0.69 = = = = = = = = = = 0.97 0.97 0.97 0.97 0.97 = ? 0.97 = 0.97 = = = = 0.94 = 0.94 0.94 = 0.94 = 0.94 = = 0.73 0.73 = 0.73 0.73 0.73 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = ? 1.00 = = 1.00 = = = ? = = ? ? = = = = = = = = = = = = = ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = 0.63 0.63 0.63 0.63 0.66 = 0.66 0.66 0.69 = = 0.87 = = 0.87 0.87 0.87 = = 0.87 = = = = ? = = 0.92 = = 0.92 0.92 0.92 = = = = = = = = 0.91 0.91 0.96 ? ? 0.96 0.96 0.96 0.96 0.96 0.96 = 0.96 0.96 = = = 0.96 = = = = = = = = = = = = ? = = = = 1.00 1.00 1.00 = = = = = = = 1.00 = 1.00 = = = ? = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? ? ? = = = = = = = = = = = = = = ? ? ? = = = = = = = = ? = = = = = = = = = = = = = = = = = = 0.82 0.82 0.78 0.78 0.78 = = = = 0.83 = ? ? ? ? = = = = = = = = = = = = = 0.67 0.67 = = 0.67 0.67 = = = 0.58 = = = = = = 0.53 = = = 0.78 0.78 0.78 = = = = = = = 0.78 0.78 0.78 = = = 0.74 0.74 0.74 = = = = = = = = = 0.59 = 0.76 0.76 = 0.76 = = 0.76 = 0.76 = 0.76 0.76 = = = = = = ? = 0.68 = = = = 0.73 0.75 = ? = = = = = = = = = = = = = ? = = = 0.73 0.73 = = = = = = = 0.99 0.99 ? ? = = = 0.96 0.96 = 0.96 = = 0.96 = 0.96 = 0.96 0.96 = = = = ? ? 0.65 = 0.65 0.64 = = = = 0.65 = = = = = = = = = 0.66 = = = = = = = = = = = = = = = = = = = = 0.87 0.87 0.87 0.83 = = = = = = = = = = = = = = = = = = = = 0.78 = ? ? ? 0.90 = = = 0.86 = = = = = = = = = = = = = = ? = = = = = = = = = = = 0.64 ? = = 0.56 0.61 = = = = = = = = = = = = = = = = = = = = = = = 0.58 = 0.58 0.57 ? = = = = = = = ? = 0.66 = = 0.66 = = = ? ? = = = = = = = = = = = = ? = = 0.93 = 0.99 0.99 = 0.99 = = 0.99 = 0.99 = 0.99 0.99 = = = = = = 0.51 0.51 0.51 0.51 = = = = = = = = = ? = = = = = = 0.52 = = = = = = = = = ? = = = = = = ? = = = = 0.55 = ? ? = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = = = 0.94 0.94 = 0.94 = 0.91 0.91 = = 0.91 0.91 0.91 = = = 0.91 0.91 = = = = = = ? = = = = = = = = = = = 0.55 0.53 ? ? = 0.53 = = 0.53 = 0.53 = 0.53 = = = 0.55 = = = 0.53 ? 0.53 0.53 = = = = 0.52 ? ? = = = 0.57 0.57 0.57 = 0.57 = = 0.57 = = 0.57 0.57 0.57 = 0.95 0.95 ? 0.95 0.95 = = = = = = 0.95 0.95 0.95 = = = = 0.99 = ? 0.99 = 0.99 0.99 0.99 = = = = 0.99 = = = 0.99 0.99 0.99 0.99 = ? 0.99 0.98 ? 0.98 = = = = = = = ? 1.00 = = 1.00 = = = = = 1.00 = = 1.00 1.00 1.00 = = = = = = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = 0.52 = 0.52 = = = = = = ? = 0.64 0.64 = = 0.64 0.64 = = = 0.64 0.64 0.64 = ? = = 0.81 0.81 0.93 0.93 0.93 = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 0.53 = 0.53 = 0.54 = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = = ? ? = = = 1.00 = ? 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 = = = 0.51 = 0.51 = = = = 0.54 = = ? = = = = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = 0.84 = = = = = = = = = 0.79 = = = 1.00 1.00 = 1.00 ? ? = = = = 0.51 = 0.51 0.51 0.52 = 0.51 = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0.52 = = = = = = = = = = = = = ? 1.00 1.00 1.00 1.00 1.00 1.00 0.63 0.63 0.63 = = = = = = = ? = 0.90 0.90 = = 0.90 0.90 = = = 0.90 0.90 0.90 ? = = = = = = = = = = = = 0.90 = = = 0.84 = = = = = = ? = = = 0.88 = = = 0.88 0.88 = 0.88 ? ? = ? = = = = = 0.63 = = 0.61 0.79 = = 0.79 0.79 0.79 = = 0.79 = = = = = = = = = = = = = 0.78 0.78 0.78 = 0.78 = 0.78 0.78 = = ? ? ? = 0.70 = = 0.70 = 0.70 = = = = = = = = = ? ? 0.59 0.59 = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = 0.72 0.57 = = = 0.94 = 0.94 0.94 = 0.94 0.94 0.94 = = 0.94 0.94 = 0.94 ? ? ? ? = = = = = = 0.66 = 0.66 = 0.67 0.67 = = 0.67 0.67 = = = 0.67 0.67 0.67 = = = = = = = = = = = = = ? ? = = 0.71 0.66 = = = 0.81 ? 0.81 0.81 = 0.81 0.81 0.81 = = = = 0.81 0.81 ? ? 0.57 ? 0.57 0.57 = = = 0.58 = = = = = = = = = = = = = = = = ? = = 0.51 = = ? = = = = = = = = = = 0.97 0.97 = = = 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = = 0.52 0.52 0.52 0.52 ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = 0.63 ? = ? = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 ? 0.51 0.51 0.52 0.51 = 0.51 0.51 = = = = = = = = = = = = = = = = = = = 0.87 = = ? 0.87 0.87 = = = = = = = = 0.90 0.90 = 0.98 0.98 0.98 0.98 0.98 0.98 0.98 0.98 = 0.98 0.98 0.98 = = = = = = 0.57 0.57 0.57 0.57 0.60 = 0.60 0.60 0.63 = = = = = = 0.68 0.68 = 0.68 = = 0.68 = = = = = = 0.71 0.71 0.93 0.93 0.93 0.93 0.93 0.93 = ? = ? 0.93 = 0.91 = 0.79 0.79 = 0.79 = = 0.79 = 0.79 = 0.79 0.79 = = 0.72 = ? ? = ? = = = = = = ? = ? = = = = 1.00 1.00 = = = = 1.00 = = ? = = = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = = = ? ? = = = ? = 0.99 = ? 0.99 0.99 ? 1.00 ? = 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 1.00 = ? = = = = = 1.00 = = = = = = = = = = = 0.54 ? ? = = = = = = = = 0.54 0.54 1.00 = = = = = ? ? = = = 0.52 = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = 0.95 ? ? = 0.95 = = 0.95 = 0.95 = = = 0.66 = = 0.66 0.66 0.66 = ? = 0.51 = = = = 0.56 = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = 0.72 0.54 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = = = END PHASEPROBS