Site Allele1 Total-pop Allele2 Total-pop hz 000727 A 0.13 G 0.87 0.23 000745 A 0.01 C 0.99 0.01 000814 C 0.01 G 0.99 0.01 001051 C 0.25 T 0.75 0.38 001069 G 0.01 C 0.99 0.01 001187 G 0.01 C 0.99 0.01 001243 G 0.01 C 0.99 0.02 001359 T 0.23 C 0.77 0.35 001395 + 0.01 - 0.99 0.01 001516 A 0.01 G 0.99 0.01 001536 A 0.01 T 0.99 0.01 001752 C 0.01 A 0.99 0.01 001894 A 0.50 G 0.50 0.50 001947 T 0.01 C 0.99 0.01 002002 A 0.14 G 0.86 0.24 002475 A 0.01 G 0.99 0.01 002666 A 0.20 T 0.80 0.31 003348 A 0.01 G 0.99 0.01 003448 G 0.01 A 0.99 0.01 003510 T 0.02 C 0.98 0.03 003513 A 0.14 G 0.86 0.24 003535 A 0.01 T 0.99 0.02 003570 T 0.02 C 0.98 0.03 003705 C 0.16 A 0.84 0.26 003956 A 0.02 T 0.98 0.03 004001 T 0.23 G 0.77 0.35 004095 T 0.19 C 0.81 0.31 004118 C 0.03 T 0.97 0.07 004140 - 0.01 + 0.99 0.01 004624 A 0.02 G 0.98 0.05 004710 C 0.02 T 0.98 0.05 004740 T 0.01 C 0.99 0.01 004751 T 0.01 C 0.99 0.01 007153 T 0.04 C 0.96 0.07 008105 G 0.01 A 0.99 0.01 008174 G 0.38 A 0.62 0.47 008239 T 0.01 C 0.99 0.01 008259 T 0.15 G 0.85 0.25 008283* 008443 C 0.46 T 0.54 0.50 008444 A 0.01 G 0.99 0.02 008514 A 0.01 G 0.99 0.02 008599 T 0.01 C 0.99 0.02 008857 + 0.07 - 0.93 0.13 Note: pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001395: T 004140: G 008857: C *Site 008283 was observed to have 3 alleles. The frequency of each allele is given below. Site Allele1 Total-pop Allele2 Total-pop Allele3 Total-pop 008283 C 0.01 G 0.44 A 0.55