Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000046 00000 ------------ T 0.97 0.91 1.00 1.00 1.00 0.98 G 0.03 0.09 0.00 0.00 0.00 0.02 0000 --- --- --- --- 000099 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000476 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000725 00000 ------------ T 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000939 00000 ------------ C 0.71 0.61 0.88 0.79 1.00 0.83 T 0.29 0.39 0.12 0.21 0.00 0.17 0000 --- --- --- --- 001323 00000 ------------ C 1.00 0.96 1.00 0.98 1.00 0.99 T 0.00 0.04 0.00 0.02 0.00 0.01 0000 --- --- --- --- 001710 00130 5' UTR T 0.50 0.36 0.61 0.35 0.80 0.54 C 0.50 0.64 0.39 0.65 0.20 0.46 0000 --- --- --- --- 002236 00000 ------------ C 0.90 0.92 0.86 0.70 0.98 0.87 A 0.10 0.08 0.14 0.30 0.02 0.13 0000 --- --- --- --- 002755 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002812 00000 ------------ C 0.96 0.96 1.00 1.00 1.00 0.99 T 0.04 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 002844 00000 ------------ G 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003300 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003318 00000 ------------ A 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003553 00000 ------------ G 0.83 0.79 0.86 0.80 1.00 0.87 A 0.17 0.21 0.14 0.20 0.00 0.13 0000 --- --- --- --- 003561 00000 ------------ G 1.00 0.79 1.00 0.98 1.00 0.97 A 0.00 0.21 0.00 0.02 0.00 0.03 0000 --- --- --- --- 003590 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 003640 00000 ------------ G 0.97 0.88 1.00 0.98 1.00 0.97 A 0.03 0.12 0.00 0.02 0.00 0.03 0000 --- --- --- --- 003714 00000 ------------ C 0.77 0.79 0.86 0.76 1.00 0.85 T 0.23 0.21 0.14 0.24 0.00 0.15 0000 --- --- --- --- 003730 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 003773 00000 ------------ A 0.42 0.29 0.69 0.38 0.83 0.56 G 0.58 0.71 0.31 0.62 0.17 0.44 0000 --- --- --- --- 004451 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 004462 00000 ------------ C 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 004523 00000 ------------ G 0.83 0.79 1.00 0.93 0.98 0.93 A 0.17 0.21 0.00 0.07 0.02 0.07 0000 --- --- --- --- 004926 00000 ------------ T 0.96 1.00 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005207 00000 ------------ A 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 005478 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005482 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005483 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 006121 00000 ------------ T 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 006226 00000 ------------ T 0.93 0.92 1.00 1.00 1.00 0.98 G 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 006656 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 006831 00000 ------------ C 0.97 0.83 1.00 0.98 1.00 0.97 G 0.03 0.17 0.00 0.02 0.00 0.03 0000 --- --- --- --- 006916 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007153 00000 ------------ T 1.00 0.92 1.00 1.00 1.00 0.99 C 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007306 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 007782 00000 ------------ A 1.00 0.95 0.83 0.92 1.00 0.94 G 0.00 0.05 0.17 0.08 0.00 0.06 0000 --- --- --- --- 007881 00000 ------------ G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 009020 00000 ------------ A 0.96 1.00 0.82 0.69 0.86 0.84 C 0.04 0.00 0.18 0.31 0.14 0.16 0000 --- --- --- --- 010961 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 011018 00000 ------------ C 0.97 1.00 0.98 0.98 1.00 0.98 T 0.03 0.00 0.02 0.02 0.00 0.02 0000 --- --- --- --- 011019 00000 ------------ G 0.97 0.88 1.00 0.95 1.00 0.97 A 0.03 0.12 0.00 0.05 0.00 0.03 0000 --- --- --- --- 011032 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 A 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011176 00000 ------------ A 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011570 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 011683 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 011707 00000 ------------ G 0.47 0.41 0.64 0.39 0.79 0.55 C 0.53 0.59 0.36 0.61 0.21 0.45 0000 --- --- --- --- 011728 00000 ------------ G 1.00 1.00 0.98 1.00 0.98 0.99 A 0.00 0.00 0.02 0.00 0.02 0.01 0000 --- --- --- --- 011757 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 011985 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 012185 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012909 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 G 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 012982 00000 ------------ A 0.82 0.88 1.00 0.98 1.00 0.95 G 0.18 0.12 0.00 0.02 0.00 0.05 0000 --- --- --- --- 013048 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 013057 00000 ------------ - 1.00 1.00 1.00 1.00 0.97 0.99 + 0.00 0.00 0.00 0.00 0.03 0.01 0000 --- --- --- --- 013903 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014227 00000 ------------ G 1.00 0.91 1.00 1.00 1.00 0.99 T 0.00 0.09 0.00 0.00 0.00 0.01 0000 --- --- --- --- 014242 00000 ------------ A 0.93 0.91 1.00 1.00 1.00 0.98 G 0.07 0.09 0.00 0.00 0.00 0.02 0000 --- --- --- --- 014358 00000 ------------ G 1.00 1.00 0.98 0.93 1.00 0.98 A 0.00 0.00 0.02 0.07 0.00 0.02 0000 --- --- --- --- 014552 00000 ------------ G 1.00 0.96 1.00 0.98 1.00 0.99 A 0.00 0.04 0.00 0.02 0.00 0.01 0000 --- --- --- --- 014935 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 015117 00000 ------------ G 0.97 0.96 1.00 0.98 1.00 0.98 A 0.03 0.04 0.00 0.02 0.00 0.02 0000 --- --- --- --- 015432 00000 ------------ G 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 015487 00000 ------------ C 1.00 0.95 1.00 0.98 1.00 0.99 T 0.00 0.05 0.00 0.02 0.00 0.01 0000 --- --- --- --- 015645 00000 ------------ G 0.82 0.86 1.00 0.98 1.00 0.95 A 0.18 0.14 0.00 0.02 0.00 0.05 0000 --- --- --- --- 015669 00000 ------------ C 0.77 0.73 1.00 0.95 1.00 0.92 T 0.23 0.27 0.00 0.05 0.00 0.08 0000 --- --- --- --- 016046 00000 ------------ G 0.97 1.00 1.00 0.98 1.00 0.99 A 0.03 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 016163 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 016275 00000 ------------ A 0.93 0.92 1.00 1.00 1.00 0.98 G 0.07 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 016393 00000 ------------ A 0.80 0.83 1.00 0.98 1.00 0.94 G 0.20 0.17 0.00 0.02 0.00 0.06 0000 --- --- --- --- 016578 00000 ------------ T 0.77 0.75 1.00 0.95 1.00 0.92 G 0.23 0.25 0.00 0.05 0.00 0.08 0000 --- --- --- --- 016732 00000 ------------ T 0.80 0.88 1.00 0.98 1.00 0.95 C 0.20 0.12 0.00 0.02 0.00 0.05 0000 --- --- --- --- 017069 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 017929 00000 ------------ T 1.00 0.91 1.00 1.00 1.00 0.99 G 0.00 0.09 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018231 00000 ------------ G 1.00 1.00 0.98 0.98 1.00 0.99 A 0.00 0.00 0.02 0.02 0.00 0.01 0000 --- --- --- --- 018385 00000 ------------ C 0.82 0.86 1.00 0.98 1.00 0.95 T 0.18 0.14 0.00 0.02 0.00 0.05 0000 --- --- --- --- 018405 00000 ------------ A 1.00 0.91 1.00 1.00 1.00 0.99 C 0.00 0.09 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018518 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 018557 00000 ------------ T 0.83 0.83 1.00 0.98 1.00 0.95 C 0.17 0.17 0.00 0.02 0.00 0.05 0000 --- --- --- --- 018558 00000 ------------ G 0.83 0.83 1.00 0.98 1.00 0.95 A 0.17 0.17 0.00 0.02 0.00 0.05 0000 --- --- --- --- 019159 00000 ------------ G 0.81 0.85 0.88 0.75 1.00 0.86 C 0.19 0.15 0.12 0.25 0.00 0.14 0000 --- --- --- --- 019266 00000 ------------ T 1.00 0.95 1.00 1.00 1.00 0.99 C 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 013057: TAAA