Site CDNA-Pos Description Allele1 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000175 00000 ------------ C 0.96 0.88 1.00 0.98 1.00 0.97 T 0.04 0.12 0.00 0.02 0.00 0.03 0000 --- --- --- --- 000357 00000 ------------ C 0.79 0.75 1.00 0.77 0.74 0.82 T 0.21 0.25 0.00 0.23 0.26 0.18 0000 --- --- --- --- 000397 00000 ------------ A 0.89 0.96 1.00 1.00 1.00 0.98 G 0.11 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 000550 00000 ------------ C 0.89 0.83 1.00 0.89 0.87 0.90 T 0.11 0.17 0.00 0.11 0.13 0.10 0000 --- --- --- --- 000553 00000 ------------ A 0.89 0.92 1.00 0.89 0.89 0.92 G 0.11 0.08 0.00 0.11 0.11 0.08 0000 --- --- --- --- 000574 00000 ------------ C 0.89 0.83 1.00 0.89 0.87 0.90 T 0.11 0.17 0.00 0.11 0.13 0.10 0000 --- --- --- --- 000725 00000 ------------ G 1.00 0.92 1.00 1.00 1.00 0.99 C 0.00 0.08 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001411 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 001469 00000 ------------ G 0.63 0.45 0.89 0.75 0.79 0.74 C 0.37 0.55 0.11 0.25 0.21 0.26 0000 --- --- --- --- 001524 00000 ------------ A 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001570 00000 ------------ A 1.00 1.00 1.00 1.00 0.98 0.99 G 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 002126 00392 NON-SYN G 0.86 0.91 1.00 0.89 1.00 0.94 C 0.14 0.09 0.00 0.11 0.00 0.06 0051 GAG GAC GLU(E) ASP(D) 002496 00000 ------------ G 1.00 1.00 1.00 0.91 0.98 0.97 C 0.00 0.00 0.00 0.09 0.02 0.03 0000 --- --- --- --- 003190 00000 ------------ A 0.93 0.96 1.00 1.00 1.00 0.98 C 0.07 0.04 0.00 0.00 0.00 0.02 0000 --- --- --- --- 003298 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 003687 00000 ------------ G 1.00 1.00 0.98 1.00 1.00 0.99 C 0.00 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 003811 00000 ------------ C 1.00 1.00 1.00 0.89 1.00 0.97 G 0.00 0.00 0.00 0.11 0.00 0.03 0000 --- --- --- --- 003877 00000 ------------ C 1.00 1.00 0.90 1.00 1.00 0.98 A 0.00 0.00 0.10 0.00 0.00 0.02 0000 --- --- --- --- 004239 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 G 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004382 00000 ------------ G 1.00 0.95 1.00 1.00 1.00 0.99 A 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004461 00000 ------------ C 1.00 0.95 1.00 1.00 1.00 0.99 T 0.00 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004560 00000 ------------ C 1.00 0.96 1.00 0.98 1.00 0.99 T 0.00 0.04 0.00 0.02 0.00 0.01 0000 --- --- --- --- 004706 00658 NON-SYN G 1.00 1.00 0.98 1.00 1.00 0.99 A 0.00 0.00 0.02 0.00 0.00 0.01 0140 CGC CAC ARG(R) HIS(H) 004805 00000 ------------ C 1.00 1.00 1.00 0.98 1.00 0.99 T 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 004806 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 004889 00000 ------------ C 0.90 0.82 1.00 0.89 0.87 0.90 T 0.10 0.18 0.00 0.11 0.13 0.10 0000 --- --- --- --- 005284 00000 ------------ A 0.77 0.75 1.00 0.77 0.83 0.84 C 0.23 0.25 0.00 0.23 0.17 0.16 0000 --- --- --- --- 005349 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 005605 00000 ------------ A 0.79 0.75 1.00 0.78 0.83 0.84 G 0.21 0.25 0.00 0.23 0.17 0.16 0000 --- --- --- --- 005719 00000 ------------ T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 005761 00000 ------------ G 1.00 1.00 0.95 1.00 1.00 0.99 A 0.00 0.00 0.05 0.00 0.00 0.01 0000 --- --- --- --- 005804 00000 ------------ C 0.93 1.00 0.89 0.98 1.00 0.96 A 0.07 0.00 0.11 0.02 0.00 0.04 0000 --- --- --- --- 005982 00725 SYNON T 0.96 0.92 1.00 1.00 1.00 0.98 C 0.04 0.08 0.00 0.00 0.00 0.02 0162 TGT TGC CYS(C) CYS(C) 006021 00764 NON-SYN G 1.00 1.00 0.98 1.00 1.00 0.99 T 0.00 0.00 0.02 0.00 0.00 0.01 0175 CAG CAT GLN(Q) HIS(H) 006181 00000 ------------ C 0.90 0.82 1.00 0.89 0.85 0.90 T 0.10 0.18 0.00 0.11 0.15 0.10 0000 --- --- --- --- 006215 00000 ------------ C 0.96 1.00 1.00 1.00 1.00 0.99 T 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 006350 00000 ------------ - 0.96 1.00 0.90 0.95 0.97 0.95 + 0.04 0.00 0.10 0.05 0.03 0.05 0000 --- --- --- --- 006579 00000 ------------ A 0.88 0.78 1.00 0.88 0.86 0.89 G 0.12 0.22 0.00 0.12 0.14 0.11 0000 --- --- --- --- 006938 00995 SYNON G 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0252 GGG GGT GLY(G) GLY(G) 007180 00000 ------------ T 0.89 0.82 1.00 0.88 0.85 0.89 C 0.11 0.18 0.00 0.12 0.15 0.11 0000 --- --- --- --- 007345 01208 SYNON T 0.89 0.82 1.00 0.88 0.85 0.90 C 0.11 0.18 0.00 0.12 0.15 0.10 0323 TAT TAC TYR(Y) TYR(Y) 007510 01373 3' UTR T 0.96 1.00 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007575 01438 3' UTR A 1.00 1.00 0.88 0.98 1.00 0.97 G 0.00 0.00 0.12 0.02 0.00 0.03 0000 --- --- --- --- 007611 01474 3' UTR T 1.00 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 007649 01512 3' UTR G 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007768 01631 3' UTR C 0.90 0.83 1.00 0.87 0.85 0.90 T 0.10 0.17 0.00 0.13 0.15 0.10 0000 --- --- --- --- 007846 01709 3' UTR C 0.87 0.92 1.00 0.87 0.98 0.93 T 0.13 0.08 0.00 0.13 0.02 0.07 0000 --- --- --- --- 007957 01820 3' UTR T 0.97 1.00 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 007990 01853 3' UTR G 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008039 01902 3' UTR G 0.90 0.83 1.00 0.88 0.85 0.90 A 0.10 0.17 0.00 0.12 0.15 0.10 0000 --- --- --- --- 008336 02199 3' UTR C 0.97 0.92 1.00 1.00 1.00 0.98 T 0.03 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 008371 02234 3' UTR T 0.77 0.75 1.00 0.76 0.83 0.83 C 0.23 0.25 0.00 0.24 0.17 0.17 0000 --- --- --- --- 008405 00000 ------------ C 1.00 0.96 1.00 1.00 1.00 0.99 T 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 008443 00000 ------------ G 1.00 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 008772 00000 ------------ - 0.00 0.00 0.00 0.00 0.02 0.01 + 1.00 1.00 1.00 1.00 0.98 0.99 0000 --- --- --- --- 008873 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 008877 00000 ------------ T 1.00 0.96 1.00 1.00 1.00 0.99 C 0.00 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009253 00000 ------------ A 1.00 1.00 0.91 1.00 1.00 0.98 G 0.00 0.00 0.09 0.00 0.00 0.02 0000 --- --- --- --- 009319 00000 ------------ T 1.00 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 009372 00000 ------------ G 0.97 1.00 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009547 00000 ------------ C 0.97 1.00 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.00 0.01 0000 --- --- --- --- 009613 00000 ------------ G 1.00 1.00 1.00 0.88 1.00 0.97 A 0.00 0.00 0.00 0.12 0.00 0.03 0000 --- --- --- --- 009724 00000 ------------ C 1.00 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 010084 00000 ------------ C 0.87 0.92 1.00 0.98 1.00 0.96 T 0.13 0.08 0.00 0.02 0.00 0.04 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 006350: C 008772: GCTTTAAGGAGATGGGGGTAGTTTA